Wall clock time and date at job start Mon Mar 30 2020 03:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46495 * 109.46965 * 2 1 4 4 C 1.46502 * 119.99736 * 269.99755 * 3 2 1 5 5 C 1.53002 * 109.47328 * 270.00205 * 4 3 2 6 6 C 1.39248 * 120.00206 * 90.00002 * 3 2 1 7 7 C 1.39712 * 120.78534 * 359.97438 * 6 3 2 8 8 C 1.38447 * 119.47508 * 180.02562 * 7 6 3 9 9 N 1.31531 * 121.10314 * 0.02562 * 8 7 6 10 10 C 1.33694 * 121.70245 * 359.68780 * 9 8 7 11 11 C 1.41457 * 119.79882 * 180.30448 * 10 9 8 12 12 H 1.08004 * 120.00251 * 180.26543 * 11 10 9 13 13 C 1.40018 * 120.00032 * 0.27156 * 11 10 9 14 14 N 1.30746 * 119.99876 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00045 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47083 * 59.99750 * 15 13 11 17 17 H 1.48493 * 109.47013 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46885 * 299.99764 * 15 13 11 19 19 C 1.39027 * 120.78183 * 180.02562 * 6 3 2 20 20 H 1.08995 * 109.47114 * 60.00522 * 1 2 3 21 21 H 1.08999 * 109.46589 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46807 * 299.99753 * 1 2 3 23 23 H 1.09001 * 109.47241 * 239.99607 * 2 1 3 24 24 H 1.09004 * 109.46856 * 119.99485 * 2 1 3 25 25 H 1.09004 * 109.47392 * 30.00107 * 4 3 2 26 26 H 1.09004 * 109.47218 * 149.99882 * 4 3 2 27 27 H 1.08996 * 109.47300 * 180.02562 * 5 4 3 28 28 H 1.09004 * 109.46804 * 300.00261 * 5 4 3 29 29 H 1.08999 * 109.46797 * 59.99843 * 5 4 3 30 30 H 1.08000 * 120.26325 * 0.02562 * 7 6 3 31 31 H 1.07998 * 119.44697 * 180.02562 * 8 7 6 32 32 H 0.96994 * 120.00265 * 180.02562 * 14 13 11 33 33 H 1.08002 * 120.55759 * 359.94863 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.7075 1.8313 -1.7105 6 6 2.2504 2.0377 1.2059 7 6 2.0226 1.3950 2.4253 8 6 2.2620 2.0735 3.6081 9 7 2.6999 3.3138 3.6033 10 6 2.9385 3.9702 2.4633 11 6 3.4151 5.3014 2.5052 12 1 3.6049 5.8362 1.5863 13 6 3.6411 5.9257 3.7380 14 7 3.4110 5.2784 4.8504 15 14 4.2712 7.6833 3.7932 16 1 3.3027 8.5781 3.1101 17 1 4.4258 8.1094 5.2073 18 1 5.5855 7.7597 3.1062 19 6 2.7132 3.3485 1.2248 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 1.5817 1.6876 -2.0285 26 1 2.0955 3.1410 -1.1385 27 1 3.8893 2.3455 -2.6542 28 1 4.3883 2.2155 -0.9508 29 1 3.8745 0.7621 -1.8407 30 1 1.6627 0.3769 2.4451 31 1 2.0861 1.5761 4.5505 32 1 3.5671 5.7109 5.7044 33 1 2.9008 3.8779 0.3024 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261231158.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:35 Heat of formation + Delta-G solvation = 33.044864 kcal Electronic energy + Delta-G solvation = -14819.114554 eV Core-core repulsion = 12458.631378 eV Total energy + Delta-G solvation = -2360.483176 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.59678 -36.38133 -33.36606 -31.95930 -30.46273 -29.67440 -27.31150 -25.56808 -23.35009 -22.33530 -20.87571 -19.67467 -17.31922 -16.01285 -15.53128 -14.95093 -14.08351 -13.98697 -13.45898 -13.33965 -13.06408 -12.82082 -12.28671 -11.95070 -11.90052 -11.63708 -11.50692 -11.16169 -11.11965 -10.81599 -10.61201 -10.44670 -10.22283 -9.63840 -9.50695 -8.96538 -7.50739 -7.38937 -6.50138 -6.26826 -4.41958 2.89495 3.13516 3.15862 3.25115 3.41540 3.84683 4.03113 4.88605 5.25361 5.34970 5.50023 5.65417 5.74379 5.76268 5.89703 6.04655 6.12177 6.12525 6.17131 6.29578 6.45675 6.55603 6.59993 6.82298 7.02348 7.10206 7.25989 7.56698 7.70870 7.79722 8.28242 8.37520 8.52670 8.85494 9.10449 10.31175 10.47007 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.038579 B = 0.007876 C = 0.006849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.603395 B = 3554.232424 C = 4087.501538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.127 3.873 3 N -0.633 5.633 4 C 0.126 3.874 5 C -0.169 4.169 6 C 0.256 3.744 7 C -0.371 4.371 8 C 0.148 3.852 9 N -0.508 5.508 10 C 0.282 3.718 11 C -0.437 4.437 12 H 0.079 0.921 13 C 0.072 3.928 14 N -0.717 5.717 15 Si 0.904 3.096 16 H -0.266 1.266 17 H -0.278 1.278 18 H -0.266 1.266 19 C -0.343 4.343 20 H 0.049 0.951 21 H 0.053 0.947 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.271 0.729 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.896 -5.382 -7.715 9.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.003 3.997 3 N -0.348 5.348 4 C 0.003 3.997 5 C -0.228 4.228 6 C 0.153 3.847 7 C -0.398 4.398 8 C -0.019 4.019 9 N -0.222 5.222 10 C 0.158 3.842 11 C -0.469 4.469 12 H 0.097 0.903 13 C -0.153 4.153 14 N -0.339 5.339 15 Si 0.728 3.272 16 H -0.191 1.191 17 H -0.203 1.203 18 H -0.190 1.190 19 C -0.369 4.369 20 H 0.068 0.932 21 H 0.072 0.928 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.133 0.867 32 H 0.082 0.918 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.744 -4.944 -6.831 8.611 hybrid contribution 0.082 0.218 -0.833 0.865 sum -1.662 -4.726 -7.664 9.156 Atomic orbital electron populations 1.22225 0.97421 1.00856 1.02311 1.21140 0.93288 0.83795 1.01434 1.46292 1.72989 1.12432 1.03052 1.21162 0.95144 0.98128 0.85311 1.22214 0.98573 1.01061 1.00958 1.17674 0.91472 0.91139 0.84449 1.20889 1.25166 1.01244 0.92526 1.22279 0.92619 0.91908 0.95071 1.68746 1.18055 1.06632 1.28770 1.18347 0.87254 0.92671 0.85962 1.19526 1.37780 0.96420 0.93126 0.90275 1.26047 0.94344 0.99407 0.95534 1.70149 1.29982 1.35709 0.98039 0.86460 0.80130 0.82551 0.78029 1.19051 1.20293 1.19045 1.21232 1.22055 0.95129 0.98526 0.93223 0.92764 0.92048 0.92385 0.90990 0.92401 0.90757 0.92682 0.91898 0.93340 0.88940 0.86749 0.91802 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.16 0.38 -1.94 16 2 C 0.13 1.92 5.91 -4.04 -0.02 1.90 16 3 N -0.63 -11.63 2.60 -171.59 -0.45 -12.08 16 4 C 0.13 2.00 5.91 -4.04 -0.02 1.98 16 5 C -0.17 -2.46 10.24 37.16 0.38 -2.08 16 6 C 0.26 5.87 6.57 -83.65 -0.55 5.32 16 7 C -0.37 -8.56 9.28 -38.95 -0.36 -8.92 16 8 C 0.15 3.73 11.17 -17.60 -0.20 3.53 16 9 N -0.51 -14.52 7.86 -11.21 -0.09 -14.61 16 10 C 0.28 8.00 6.55 -85.02 -0.56 7.44 16 11 C -0.44 -12.13 9.14 -37.69 -0.34 -12.47 16 12 H 0.08 2.06 7.85 -52.48 -0.41 1.64 16 13 C 0.07 1.89 5.50 -17.35 -0.10 1.79 16 14 N -0.72 -19.76 11.46 55.55 0.64 -19.12 16 15 Si 0.90 19.13 29.56 -169.99 -5.02 14.11 16 16 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 17 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 18 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 19 C -0.34 -8.68 8.99 -38.48 -0.35 -9.03 16 20 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.06 0.75 8.07 -51.93 -0.42 0.33 16 24 H 0.07 1.13 6.25 -51.93 -0.32 0.81 16 25 H 0.06 0.77 8.07 -51.93 -0.42 0.35 16 26 H 0.07 1.27 6.25 -51.93 -0.32 0.94 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.90 6.26 -52.49 -0.33 1.57 16 31 H 0.11 2.57 8.06 -52.49 -0.42 2.15 16 32 H 0.27 6.77 8.29 -40.82 -0.34 6.43 16 33 H 0.10 2.31 6.27 -52.49 -0.33 1.98 16 LS Contribution 276.50 15.07 4.17 4.17 Total: -1.00 -30.15 276.50 -7.14 -37.29 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -4.65 Total: 2.72 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -1.74 Total: -12.48 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.10 Total: -45.81 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.15 -7.14 -37.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261231158.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.333 kcal (2) G-P(sol) polarization free energy of solvation -30.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds