Wall clock time and date at job start Mon Mar 30 2020 03:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46495 * 109.46965 * 2 1 4 4 C 1.46502 * 119.99736 * 269.99755 * 3 2 1 5 5 C 1.53002 * 109.47328 * 270.00205 * 4 3 2 6 6 C 1.39248 * 120.00206 * 90.00002 * 3 2 1 7 7 C 1.39712 * 120.78534 * 359.97438 * 6 3 2 8 8 C 1.38447 * 119.47508 * 180.02562 * 7 6 3 9 9 N 1.31531 * 121.10314 * 0.02562 * 8 7 6 10 10 C 1.33694 * 121.70245 * 359.68780 * 9 8 7 11 11 C 1.41457 * 119.79882 * 180.30448 * 10 9 8 12 12 H 1.08004 * 120.00251 * 180.26543 * 11 10 9 13 13 C 1.40018 * 120.00032 * 0.27156 * 11 10 9 14 14 N 1.30746 * 119.99876 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00045 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47083 * 59.99750 * 15 13 11 17 17 H 1.48493 * 109.47013 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46885 * 299.99764 * 15 13 11 19 19 C 1.39027 * 120.78183 * 180.02562 * 6 3 2 20 20 H 1.08995 * 109.47114 * 60.00522 * 1 2 3 21 21 H 1.08999 * 109.46589 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46807 * 299.99753 * 1 2 3 23 23 H 1.09001 * 109.47241 * 239.99607 * 2 1 3 24 24 H 1.09004 * 109.46856 * 119.99485 * 2 1 3 25 25 H 1.09004 * 109.47392 * 30.00107 * 4 3 2 26 26 H 1.09004 * 109.47218 * 149.99882 * 4 3 2 27 27 H 1.08996 * 109.47300 * 180.02562 * 5 4 3 28 28 H 1.09004 * 109.46804 * 300.00261 * 5 4 3 29 29 H 1.08999 * 109.46797 * 59.99843 * 5 4 3 30 30 H 1.08000 * 120.26325 * 0.02562 * 7 6 3 31 31 H 1.07998 * 119.44697 * 180.02562 * 8 7 6 32 32 H 0.96994 * 120.00265 * 180.02562 * 14 13 11 33 33 H 1.08002 * 120.55759 * 359.94863 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.7075 1.8313 -1.7105 6 6 2.2504 2.0377 1.2059 7 6 2.0226 1.3950 2.4253 8 6 2.2620 2.0735 3.6081 9 7 2.6999 3.3138 3.6033 10 6 2.9385 3.9702 2.4633 11 6 3.4151 5.3014 2.5052 12 1 3.6049 5.8362 1.5863 13 6 3.6411 5.9257 3.7380 14 7 3.4110 5.2784 4.8504 15 14 4.2712 7.6833 3.7932 16 1 3.3027 8.5781 3.1101 17 1 4.4258 8.1094 5.2073 18 1 5.5855 7.7597 3.1062 19 6 2.7132 3.3485 1.2248 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 1.5817 1.6876 -2.0285 26 1 2.0955 3.1410 -1.1385 27 1 3.8893 2.3455 -2.6542 28 1 4.3883 2.2155 -0.9508 29 1 3.8745 0.7621 -1.8407 30 1 1.6627 0.3769 2.4451 31 1 2.0861 1.5761 4.5505 32 1 3.5671 5.7109 5.7044 33 1 2.9008 3.8779 0.3024 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261231158.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:35 Heat of formation + Delta-G solvation = 15.528881 kcal Electronic energy + Delta-G solvation = -14819.874104 eV Core-core repulsion = 12458.631378 eV Total energy + Delta-G solvation = -2361.242726 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.35664 -38.01939 -35.30143 -33.22571 -32.13184 -31.58344 -28.81163 -27.51304 -24.70781 -23.91268 -22.69974 -21.31954 -19.07189 -17.80150 -17.07381 -16.64376 -15.84709 -15.56108 -15.06011 -14.86277 -14.50020 -14.29707 -13.89779 -13.75286 -13.27324 -12.92430 -12.82611 -12.79337 -12.78359 -12.46969 -12.17506 -11.85763 -11.74499 -11.41726 -11.27011 -10.78228 -9.50204 -9.37654 -8.21335 -8.15395 -6.47462 1.00694 1.40574 1.43155 1.53447 1.61524 2.25191 2.43685 2.92831 4.05294 4.06986 4.14269 4.31179 4.33615 4.53015 4.56947 4.58915 4.74456 4.79418 4.85652 4.96594 4.99361 5.08370 5.14455 5.25620 5.32707 5.41230 5.43162 5.74760 5.76846 5.96210 6.32251 6.62916 6.79286 6.94201 7.11790 8.35291 8.53729 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.038579 B = 0.007876 C = 0.006849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.603395 B = 3554.232424 C = 4087.501538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.120 3.880 3 N -0.631 5.631 4 C 0.120 3.880 5 C -0.161 4.161 6 C 0.262 3.738 7 C -0.365 4.365 8 C 0.127 3.873 9 N -0.548 5.548 10 C 0.250 3.750 11 C -0.477 4.477 12 H 0.082 0.918 13 C 0.025 3.975 14 N -0.759 5.759 15 Si 0.986 3.014 16 H -0.259 1.259 17 H -0.267 1.267 18 H -0.259 1.259 19 C -0.362 4.362 20 H 0.055 0.945 21 H 0.083 0.917 22 H 0.033 0.967 23 H 0.091 0.909 24 H 0.066 0.934 25 H 0.093 0.907 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.028 0.972 29 H 0.062 0.938 30 H 0.121 0.879 31 H 0.134 0.866 32 H 0.277 0.723 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.174 -6.230 -9.426 11.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.003 4.003 3 N -0.344 5.344 4 C -0.003 4.003 5 C -0.219 4.219 6 C 0.155 3.845 7 C -0.392 4.392 8 C -0.037 4.037 9 N -0.263 5.263 10 C 0.125 3.875 11 C -0.509 4.509 12 H 0.100 0.900 13 C -0.196 4.196 14 N -0.381 5.381 15 Si 0.806 3.194 16 H -0.183 1.183 17 H -0.191 1.191 18 H -0.183 1.183 19 C -0.389 4.389 20 H 0.074 0.926 21 H 0.102 0.898 22 H 0.052 0.948 23 H 0.109 0.891 24 H 0.084 0.916 25 H 0.112 0.888 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.047 0.953 29 H 0.081 0.919 30 H 0.139 0.861 31 H 0.151 0.849 32 H 0.087 0.913 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.042 -5.845 -8.584 10.584 hybrid contribution 0.096 0.279 -0.422 0.515 sum -1.946 -5.565 -9.006 10.764 Atomic orbital electron populations 1.22147 0.96122 1.02504 1.01272 1.21434 0.94265 0.81818 1.02765 1.46589 1.71861 1.13631 1.02289 1.21384 0.96875 0.97163 0.84912 1.22125 0.96664 1.02110 1.01037 1.17767 0.89832 0.90512 0.86421 1.21142 1.23872 1.02256 0.91971 1.22716 0.92597 0.91531 0.96896 1.68686 1.19927 1.08206 1.29525 1.18791 0.88054 0.93537 0.87104 1.19889 1.39650 0.97131 0.94198 0.89971 1.26990 0.93948 1.04141 0.94533 1.70259 1.31133 1.37946 0.98759 0.85232 0.79512 0.76177 0.78517 1.18340 1.19132 1.18334 1.21288 1.23295 0.96531 0.97786 0.92561 0.89801 0.94756 0.89110 0.91606 0.88840 0.92670 0.90098 0.95259 0.91923 0.86103 0.84880 0.91260 0.88131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 10.24 71.98 0.74 -3.15 16 2 C 0.12 3.20 5.91 86.38 0.51 3.71 16 3 N -0.63 -21.91 2.60 -696.78 -1.81 -23.71 16 4 C 0.12 3.50 5.91 86.38 0.51 4.01 16 5 C -0.16 -4.30 10.24 71.98 0.74 -3.56 16 6 C 0.26 11.93 6.57 38.51 0.25 12.18 16 7 C -0.36 -16.69 9.28 22.68 0.21 -16.48 16 8 C 0.13 6.54 11.17 84.79 0.95 7.48 16 9 N -0.55 -32.51 7.86 -189.38 -1.49 -33.99 16 10 C 0.25 14.74 6.55 40.18 0.26 15.01 16 11 C -0.48 -27.55 9.14 23.49 0.21 -27.33 16 12 H 0.08 4.45 7.85 -2.91 -0.02 4.43 16 13 C 0.02 1.35 5.50 85.29 0.47 1.82 16 14 N -0.76 -43.18 11.46 21.84 0.25 -42.93 16 15 Si 0.99 39.94 29.56 68.60 2.03 41.97 16 16 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 17 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 18 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 19 C -0.36 -18.85 8.99 22.99 0.21 -18.65 16 20 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 21 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.09 1.89 8.07 -2.39 -0.02 1.88 16 24 H 0.07 1.86 6.25 -2.38 -0.01 1.84 16 25 H 0.09 2.11 8.07 -2.38 -0.02 2.09 16 26 H 0.05 1.84 6.25 -2.38 -0.01 1.82 16 27 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.12 4.74 6.26 -2.91 -0.02 4.72 16 31 H 0.13 6.06 8.06 -2.91 -0.02 6.04 16 32 H 0.28 14.22 8.29 -92.71 -0.77 13.45 16 33 H 0.10 4.97 6.27 -2.91 -0.02 4.96 16 Total: -1.00 -67.94 276.50 5.12 -62.81 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 1.08 Total: 20.81 kcal Atomic # 6 Polarization: -30.02 SS G_CDS: 5.06 Total: -24.96 kcal Atomic # 7 Polarization: -97.59 SS G_CDS: -3.05 Total: -100.64 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Total: -67.94 5.12 -62.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261231158.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.344 kcal (2) G-P(sol) polarization free energy of solvation -67.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds