Wall clock time and date at job start Mon Mar 30 2020 02:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.74290 * 2 1 4 4 C 1.53496 * 109.74268 * 239.33135 * 2 1 3 5 5 C 1.53116 * 109.30891 * 191.65224 * 4 2 1 6 6 C 1.53289 * 109.70582 * 69.90898 * 5 4 2 7 7 N 1.46469 * 108.69510 * 309.23689 * 6 5 4 8 8 C 1.34405 * 128.44713 * 197.34382 * 7 6 5 9 9 N 1.30781 * 108.55773 * 179.80991 * 8 7 6 10 10 C 1.34429 * 109.31654 * 0.05875 * 9 8 7 11 11 C 1.50706 * 126.09500 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47075 * 270.04054 * 11 10 9 13 13 H 1.08000 * 120.00460 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00083 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00525 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99880 * 359.97438 * 14 12 11 17 17 H 1.48508 * 109.46889 * 90.00531 * 16 14 12 18 18 H 1.48502 * 109.47293 * 210.00115 * 16 14 12 19 19 H 1.48498 * 109.47437 * 330.00598 * 16 14 12 20 20 C 1.33857 * 107.79971 * 0.02562 * 10 9 8 21 21 H 1.08999 * 109.47248 * 180.66947 * 1 2 3 22 22 H 1.09002 * 109.46693 * 300.66615 * 1 2 3 23 23 H 1.08993 * 109.47214 * 60.66622 * 1 2 3 24 24 H 1.08997 * 109.49660 * 71.70496 * 4 2 1 25 25 H 1.08996 * 109.52497 * 311.61526 * 4 2 1 26 26 H 1.08999 * 109.43596 * 189.98211 * 5 4 2 27 27 H 1.09001 * 109.43165 * 309.84108 * 5 4 2 28 28 H 1.08995 * 109.59835 * 69.00030 * 6 5 4 29 29 H 1.08997 * 109.60043 * 189.47484 * 6 5 4 30 30 H 1.08005 * 125.72010 * 359.80718 * 8 7 6 31 31 H 1.08997 * 109.47041 * 30.04451 * 11 10 9 32 32 H 1.09004 * 109.46498 * 150.04133 * 11 10 9 33 33 H 0.96997 * 120.00557 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 6 2.0485 -0.7369 -1.2427 5 6 3.5516 -0.9872 -1.0925 6 6 3.7944 -2.0367 -0.0020 7 7 3.0595 -1.6416 1.2019 8 6 3.2289 -2.0728 2.4636 9 7 2.3658 -1.4605 3.2320 10 6 1.6218 -0.6246 2.4872 11 6 0.5147 0.2658 2.9899 12 6 -0.7945 -0.4780 2.9301 13 1 -0.8222 -1.4941 2.5651 14 6 -1.9571 0.1385 3.3415 15 7 -3.0996 -0.5108 3.2898 16 14 -1.9092 1.8957 3.9736 17 1 -2.1058 2.8350 2.8402 18 1 -2.9905 2.0921 4.9724 19 1 -0.5935 2.1570 4.6106 20 6 2.0390 -0.7250 1.2192 21 1 -0.3634 -1.0276 0.0120 22 1 -0.3633 0.5242 0.8840 23 1 -0.3633 0.5034 -0.8958 24 1 1.8678 -0.1280 -2.1285 25 1 1.5294 -1.6900 -1.3441 26 1 3.9556 -1.3472 -2.0386 27 1 4.0484 -0.0568 -0.8173 28 1 3.4395 -3.0087 -0.3445 29 1 4.8597 -2.0919 0.2216 30 1 3.9558 -2.8027 2.7883 31 1 0.7212 0.5558 4.0201 32 1 0.4546 1.1579 2.3664 33 1 -3.9175 -0.0772 3.5796 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261234088.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:50 Heat of formation + Delta-G solvation = 46.846199 kcal Electronic energy + Delta-G solvation = -15311.512248 eV Core-core repulsion = 12951.627542 eV Total energy + Delta-G solvation = -2359.884705 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.71738 -36.57283 -34.42912 -32.43583 -30.35703 -29.82525 -27.23572 -25.73958 -22.59433 -22.31305 -21.55529 -19.50854 -18.37852 -16.65795 -16.20772 -15.43208 -14.54086 -14.15771 -13.93121 -13.70131 -13.44847 -12.99471 -12.68663 -12.26939 -11.83870 -11.68905 -11.26672 -11.09336 -10.86621 -10.57712 -10.46308 -10.32424 -10.01754 -9.87583 -9.25638 -9.00843 -8.68616 -8.44389 -7.33322 -5.93768 -3.88835 2.72627 3.29281 3.36725 3.45445 3.51182 4.00622 4.53485 4.58442 4.71916 4.85510 5.17970 5.20167 5.32868 5.38931 5.43154 5.61634 5.73375 5.80327 5.92640 6.05315 6.20962 6.29897 6.47730 6.61165 6.81040 7.02165 7.12248 7.34605 7.44299 7.63366 7.86773 7.91925 8.67789 8.92230 9.13239 9.67045 11.19570 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.037290 B = 0.009500 C = 0.008479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.700047 B = 2946.534724 C = 3301.457870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.007 4.007 3 H 0.074 0.926 4 C -0.120 4.120 5 C -0.131 4.131 6 C 0.109 3.891 7 N -0.466 5.466 8 C 0.162 3.838 9 N -0.490 5.490 10 C 0.063 3.937 11 C 0.059 3.941 12 C -0.492 4.492 13 H 0.071 0.929 14 C 0.067 3.933 15 N -0.903 5.903 16 Si 0.870 3.130 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.264 1.264 20 C -0.038 4.038 21 H 0.056 0.944 22 H 0.100 0.900 23 H 0.041 0.959 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.194 0.806 31 H 0.029 0.971 32 H 0.025 0.975 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.339 -0.072 -10.087 16.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 H 0.092 0.908 4 C -0.158 4.158 5 C -0.169 4.169 6 C -0.014 4.014 7 N -0.152 5.152 8 C -0.119 4.119 9 N -0.209 5.209 10 C -0.065 4.065 11 C 0.020 3.980 12 C -0.530 4.530 13 H 0.089 0.911 14 C -0.134 4.134 15 N -0.543 5.543 16 Si 0.698 3.302 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.188 1.188 20 C -0.149 4.149 21 H 0.075 0.925 22 H 0.118 0.882 23 H 0.060 0.940 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.211 0.789 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.163 -0.230 -9.306 16.122 hybrid contribution 0.144 0.671 -0.499 0.849 sum 13.308 0.441 -9.805 16.536 Atomic orbital electron populations 1.22060 0.91961 1.03396 1.03146 1.19653 0.97303 0.96924 0.88740 0.90767 1.21772 0.94260 1.01376 0.98414 1.21847 0.98185 0.99043 0.97840 1.21798 0.96326 0.98878 0.84414 1.45228 1.28328 1.33596 1.08088 1.24592 1.03333 1.04176 0.79830 1.70414 1.07080 1.10250 1.33198 1.20653 0.97991 0.99079 0.88785 1.18162 0.90838 0.92834 0.96131 1.20868 0.88909 1.01144 1.42094 0.91094 1.24946 0.95414 0.97601 0.95406 1.69900 0.98513 1.37253 1.48638 0.86914 0.78194 0.85821 0.79310 1.20226 1.21386 1.18826 1.20771 0.96025 1.00400 0.97684 0.92501 0.88151 0.93962 0.91161 0.91521 0.90267 0.91100 0.90561 0.89960 0.78930 0.95317 0.95690 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.28 37.16 0.31 -2.52 16 2 C -0.01 -0.11 2.96 -91.51 -0.27 -0.38 16 3 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.12 -1.55 5.28 -26.41 -0.14 -1.68 16 5 C -0.13 -1.37 5.92 -26.52 -0.16 -1.53 16 6 C 0.11 1.24 7.00 -3.91 -0.03 1.21 16 7 N -0.47 -7.79 3.13 -114.09 -0.36 -8.15 16 8 C 0.16 2.91 12.66 -90.72 -1.15 1.76 16 9 N -0.49 -11.29 11.27 -11.08 -0.12 -11.42 16 10 C 0.06 1.49 6.18 -82.99 -0.51 0.97 16 11 C 0.06 1.50 3.67 -29.04 -0.11 1.39 16 12 C -0.49 -14.21 7.64 -34.44 -0.26 -14.48 16 13 H 0.07 2.29 7.98 -52.49 -0.42 1.87 16 14 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 15 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 16 Si 0.87 21.78 27.47 -169.99 -4.67 17.11 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 20 C -0.04 -0.75 6.09 -81.73 -0.50 -1.24 16 21 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 22 H 0.10 2.25 4.10 -51.93 -0.21 2.03 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.19 2.55 8.06 -52.48 -0.42 2.13 16 31 H 0.03 0.77 7.20 -51.93 -0.37 0.39 16 32 H 0.03 0.61 6.15 -51.93 -0.32 0.29 16 33 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 262.71 15.07 3.96 3.96 Total: -1.00 -33.66 262.71 -8.05 -41.70 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -4.72 Total: -1.34 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -2.91 Total: -14.65 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 0.29 Total: -46.78 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.66 -8.05 -41.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234088.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.551 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds