Wall clock time and date at job start Mon Mar 30 2020 02:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.74290 * 2 1 4 4 C 1.53496 * 109.74268 * 239.33135 * 2 1 3 5 5 C 1.53116 * 109.30891 * 191.65224 * 4 2 1 6 6 C 1.53289 * 109.70582 * 69.90898 * 5 4 2 7 7 N 1.46469 * 108.69510 * 309.23689 * 6 5 4 8 8 C 1.34405 * 128.44713 * 197.34382 * 7 6 5 9 9 N 1.30781 * 108.55773 * 179.80991 * 8 7 6 10 10 C 1.34429 * 109.31654 * 0.05875 * 9 8 7 11 11 C 1.50706 * 126.09500 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47075 * 270.04054 * 11 10 9 13 13 H 1.08000 * 120.00460 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00083 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00525 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99880 * 359.97438 * 14 12 11 17 17 H 1.48508 * 109.46889 * 90.00531 * 16 14 12 18 18 H 1.48502 * 109.47293 * 210.00115 * 16 14 12 19 19 H 1.48498 * 109.47437 * 330.00598 * 16 14 12 20 20 C 1.33857 * 107.79971 * 0.02562 * 10 9 8 21 21 H 1.08999 * 109.47248 * 180.66947 * 1 2 3 22 22 H 1.09002 * 109.46693 * 300.66615 * 1 2 3 23 23 H 1.08993 * 109.47214 * 60.66622 * 1 2 3 24 24 H 1.08997 * 109.49660 * 71.70496 * 4 2 1 25 25 H 1.08996 * 109.52497 * 311.61526 * 4 2 1 26 26 H 1.08999 * 109.43596 * 189.98211 * 5 4 2 27 27 H 1.09001 * 109.43165 * 309.84108 * 5 4 2 28 28 H 1.08995 * 109.59835 * 69.00030 * 6 5 4 29 29 H 1.08997 * 109.60043 * 189.47484 * 6 5 4 30 30 H 1.08005 * 125.72010 * 359.80718 * 8 7 6 31 31 H 1.08997 * 109.47041 * 30.04451 * 11 10 9 32 32 H 1.09004 * 109.46498 * 150.04133 * 11 10 9 33 33 H 0.96997 * 120.00557 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 6 2.0485 -0.7369 -1.2427 5 6 3.5516 -0.9872 -1.0925 6 6 3.7944 -2.0367 -0.0020 7 7 3.0595 -1.6416 1.2019 8 6 3.2289 -2.0728 2.4636 9 7 2.3658 -1.4605 3.2320 10 6 1.6218 -0.6246 2.4872 11 6 0.5147 0.2658 2.9899 12 6 -0.7945 -0.4780 2.9301 13 1 -0.8222 -1.4941 2.5651 14 6 -1.9571 0.1385 3.3415 15 7 -3.0996 -0.5108 3.2898 16 14 -1.9092 1.8957 3.9736 17 1 -2.1058 2.8350 2.8402 18 1 -2.9905 2.0921 4.9724 19 1 -0.5935 2.1570 4.6106 20 6 2.0390 -0.7250 1.2192 21 1 -0.3634 -1.0276 0.0120 22 1 -0.3633 0.5242 0.8840 23 1 -0.3633 0.5034 -0.8958 24 1 1.8678 -0.1280 -2.1285 25 1 1.5294 -1.6900 -1.3441 26 1 3.9556 -1.3472 -2.0386 27 1 4.0484 -0.0568 -0.8173 28 1 3.4395 -3.0087 -0.3445 29 1 4.8597 -2.0919 0.2216 30 1 3.9558 -2.8027 2.7883 31 1 0.7212 0.5558 4.0201 32 1 0.4546 1.1579 2.3664 33 1 -3.9175 -0.0772 3.5796 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261234088.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:50 Heat of formation + Delta-G solvation = 25.392752 kcal Electronic energy + Delta-G solvation = -15312.442539 eV Core-core repulsion = 12951.627542 eV Total energy + Delta-G solvation = -2360.814997 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.14402 -37.74480 -36.09685 -34.40025 -31.72447 -31.56785 -28.84791 -27.08979 -24.54302 -23.51194 -22.87968 -20.97579 -19.72680 -18.88957 -17.55107 -16.66313 -16.19459 -15.85555 -15.25532 -14.98789 -14.78618 -14.45349 -14.19483 -13.90333 -13.69358 -13.25957 -12.67317 -12.42799 -12.30333 -12.27102 -11.98429 -11.84888 -11.66937 -11.50664 -11.34395 -10.72459 -10.58638 -10.14592 -8.91396 -8.22459 -6.22949 1.29530 1.36288 1.40112 1.52527 2.08531 2.38474 2.40067 3.10960 3.66894 3.77731 3.85853 3.89839 4.07139 4.38101 4.40944 4.45972 4.62753 4.72206 4.78403 4.85087 4.94473 5.01445 5.07012 5.16672 5.19258 5.39028 5.47350 5.59195 5.63370 5.79661 5.98535 6.38080 6.59859 6.77777 7.36384 7.39435 8.94576 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.037290 B = 0.009500 C = 0.008479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.700047 B = 2946.534724 C = 3301.457870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.010 4.010 3 H 0.089 0.911 4 C -0.116 4.116 5 C -0.125 4.125 6 C 0.097 3.903 7 N -0.459 5.459 8 C 0.173 3.827 9 N -0.548 5.548 10 C 0.005 3.995 11 C 0.071 3.929 12 C -0.486 4.486 13 H 0.018 0.982 14 C 0.009 3.991 15 N -0.951 5.951 16 Si 0.941 3.059 17 H -0.255 1.255 18 H -0.283 1.283 19 H -0.256 1.256 20 C -0.030 4.030 21 H 0.024 0.976 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.096 0.904 25 H 0.055 0.945 26 H 0.119 0.881 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.240 0.760 31 H 0.009 0.991 32 H 0.038 0.962 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.001 0.764 -12.117 20.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.029 4.029 3 H 0.107 0.893 4 C -0.154 4.154 5 C -0.163 4.163 6 C -0.024 4.024 7 N -0.144 5.144 8 C -0.109 4.109 9 N -0.269 5.269 10 C -0.123 4.123 11 C 0.033 3.967 12 C -0.524 4.524 13 H 0.036 0.964 14 C -0.187 4.187 15 N -0.592 5.592 16 Si 0.765 3.235 17 H -0.179 1.179 18 H -0.209 1.209 19 H -0.180 1.180 20 C -0.143 4.143 21 H 0.043 0.957 22 H 0.081 0.919 23 H 0.090 0.910 24 H 0.115 0.885 25 H 0.073 0.927 26 H 0.137 0.863 27 H 0.091 0.909 28 H 0.109 0.891 29 H 0.136 0.864 30 H 0.256 0.744 31 H 0.027 0.973 32 H 0.056 0.944 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.857 0.596 -11.373 19.522 hybrid contribution -0.641 0.263 0.076 0.698 sum 15.215 0.860 -11.297 18.970 Atomic orbital electron populations 1.21906 0.94280 1.01032 1.02699 1.19785 0.95301 0.98113 0.89719 0.89327 1.21748 0.96019 1.00641 0.96950 1.21881 0.96074 0.99032 0.99286 1.22337 0.97729 0.99803 0.82482 1.45528 1.27421 1.31988 1.09456 1.25376 1.02319 1.03274 0.79944 1.70257 1.09129 1.11917 1.35553 1.20488 0.99472 1.01306 0.90990 1.17891 0.90123 0.93471 0.95254 1.20870 0.91132 0.99033 1.41403 0.96397 1.25846 0.94704 1.02615 0.95585 1.70055 0.99402 1.39577 1.50173 0.85790 0.78442 0.80010 0.79304 1.17921 1.20920 1.18029 1.21039 0.95903 1.00209 0.97188 0.95674 0.91926 0.91022 0.88539 0.92652 0.86274 0.90886 0.89147 0.86362 0.74398 0.97252 0.94438 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.49 8.28 71.98 0.60 -4.89 16 2 C -0.01 -0.31 2.96 -11.37 -0.03 -0.34 16 3 H 0.09 2.62 8.14 -2.38 -0.02 2.60 16 4 C -0.12 -2.58 5.28 30.80 0.16 -2.41 16 5 C -0.13 -1.98 5.92 30.73 0.18 -1.80 16 6 C 0.10 1.76 7.00 86.48 0.61 2.36 16 7 N -0.46 -14.31 3.13 -514.86 -1.61 -15.92 16 8 C 0.17 5.94 12.66 180.38 2.28 8.22 16 9 N -0.55 -25.74 11.27 -188.95 -2.13 -27.87 16 10 C 0.00 0.22 6.18 41.17 0.25 0.48 16 11 C 0.07 3.77 3.67 29.10 0.11 3.88 16 12 C -0.49 -29.77 7.64 25.60 0.20 -29.57 16 13 H 0.02 1.24 7.98 -2.91 -0.02 1.22 16 14 C 0.01 0.53 5.47 84.65 0.46 0.99 16 15 N -0.95 -61.46 13.96 21.45 0.30 -61.17 16 16 Si 0.94 45.98 27.47 68.60 1.88 47.86 16 17 H -0.25 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 19 H -0.26 -12.12 6.54 99.48 0.65 -11.47 16 20 C -0.03 -1.16 6.09 40.73 0.25 -0.91 16 21 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.06 2.90 4.10 -2.39 -0.01 2.89 16 23 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 24 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.05 1.36 8.08 -2.39 -0.02 1.34 16 26 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.07 1.19 8.11 -2.39 -0.02 1.17 16 28 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.24 5.51 8.06 -2.91 -0.02 5.49 16 31 H 0.01 0.51 7.20 -2.39 -0.02 0.50 16 32 H 0.04 1.86 6.15 -2.39 -0.01 1.85 16 33 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -79.72 262.71 4.54 -75.19 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 1.03 Total: 5.90 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: 5.06 Total: -24.00 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -3.44 Total: -104.95 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.88 Total: 47.86 kcal Total: -79.72 4.54 -75.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234088.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.581 kcal (2) G-P(sol) polarization free energy of solvation -79.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds