Wall clock time and date at job start Mon Mar 30 2020 03:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47515 * 2 1 4 4 C 1.50693 * 109.47319 * 239.99000 * 2 1 3 5 5 H 1.08001 * 120.00775 * 240.00186 * 4 2 1 6 6 C 1.37877 * 119.99724 * 60.00306 * 4 2 1 7 7 N 1.31517 * 120.00242 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00156 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46914 * 60.00129 * 8 6 4 10 10 H 1.48502 * 109.47320 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47495 * 300.00163 * 8 6 4 12 12 C 1.50706 * 109.46825 * 119.99319 * 2 1 3 13 13 C 1.40058 * 126.10106 * 59.97690 * 12 2 1 14 14 N 1.31021 * 108.25629 * 180.02562 * 13 12 2 15 15 N 1.39657 * 108.12697 * 359.96019 * 14 13 12 16 16 C 1.34745 * 126.10189 * 239.99618 * 12 2 1 17 17 C 1.50867 * 127.76410 * 0.04381 * 16 12 2 18 18 C 1.53446 * 108.17747 * 164.22257 * 17 16 12 19 19 C 1.53148 * 109.18645 * 48.56815 * 18 17 16 20 20 C 1.46589 * 127.54961 * 180.11193 * 15 14 13 21 21 H 1.08999 * 109.47031 * 300.00629 * 1 2 3 22 22 H 1.08993 * 109.46650 * 60.00560 * 1 2 3 23 23 H 1.08995 * 109.46877 * 180.02562 * 1 2 3 24 24 H 0.97001 * 120.00182 * 179.97438 * 7 6 4 25 25 H 1.08001 * 125.87035 * 359.97195 * 13 12 2 26 26 H 1.09005 * 109.72438 * 44.55790 * 17 16 12 27 27 H 1.09000 * 109.72771 * 283.89360 * 17 16 12 28 28 H 1.08998 * 109.51612 * 168.47429 * 18 17 16 29 29 H 1.09000 * 109.51816 * 288.64910 * 18 17 16 30 30 H 1.08993 * 109.45933 * 50.58429 * 19 18 17 31 31 H 1.09005 * 109.45320 * 170.54042 * 19 18 17 32 32 H 1.09004 * 109.58157 * 42.87800 * 20 15 14 33 33 H 1.08991 * 109.69646 * 282.53196 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6533 -1.5887 -1.1311 6 6 1.6994 -0.2397 -2.4826 7 7 0.9429 0.8293 -2.6035 8 14 2.3226 -1.1200 -4.0077 9 1 1.8281 -2.5203 -4.0078 10 1 1.8270 -0.4205 -5.2203 11 1 3.8075 -1.1195 -4.0075 12 6 2.0323 -0.7103 1.2306 13 6 1.7735 -2.0422 1.5781 14 7 2.3781 -2.2953 2.7126 15 7 3.0397 -1.1350 3.1207 16 6 2.8102 -0.1773 2.1931 17 6 3.3530 1.2283 2.2694 18 6 3.8351 1.4780 3.7046 19 6 4.7147 0.3065 4.1511 20 6 3.8488 -0.9458 4.3283 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5137 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 0.7089 1.1609 -3.4845 25 1 1.1773 -2.7402 1.0092 26 1 2.5674 1.9403 2.0163 27 1 4.1874 1.3386 1.5767 28 1 4.4134 2.4013 3.7391 29 1 2.9746 1.5612 4.3685 30 1 5.4779 0.1173 3.3964 31 1 5.1943 0.5531 5.0984 32 1 4.4901 -1.8144 4.4782 33 1 3.1960 -0.8203 5.1920 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261235281.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:56 Heat of formation + Delta-G solvation = 56.576321 kcal Electronic energy + Delta-G solvation = -15078.682877 eV Core-core repulsion = 12719.220101 eV Total energy + Delta-G solvation = -2359.462776 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.78510 -36.20471 -34.32282 -31.97952 -30.15778 -29.70408 -26.60664 -24.97884 -23.84610 -21.81985 -21.45531 -19.24644 -18.11688 -16.20875 -15.40726 -15.27947 -14.44492 -14.20128 -13.99180 -13.64364 -13.35296 -12.74040 -12.48801 -11.96815 -11.60895 -11.25378 -11.01997 -10.95413 -10.80377 -10.75672 -10.68806 -10.25474 -10.14370 -9.83472 -9.33957 -8.85193 -8.43463 -8.25508 -7.25404 -5.90170 -3.95249 2.62875 3.13667 3.37375 3.41483 3.44796 3.79199 4.52160 4.63651 4.77594 4.90629 5.16142 5.38224 5.40528 5.50030 5.60260 5.73543 5.88849 5.90671 6.01043 6.21984 6.33954 6.59311 6.64951 6.94470 7.03580 7.23209 7.40318 7.60322 7.78193 7.86226 8.06359 8.23351 8.51256 8.61485 9.07535 9.68611 11.15280 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.037835 B = 0.008136 C = 0.007853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.868272 B = 3440.491491 C = 3564.682865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.109 3.891 3 H 0.030 0.970 4 C -0.499 4.499 5 H 0.053 0.947 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.889 3.111 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.279 1.279 12 C -0.170 4.170 13 C 0.055 3.945 14 N -0.319 5.319 15 N -0.387 5.387 16 C 0.050 3.950 17 C -0.050 4.050 18 C -0.124 4.124 19 C -0.134 4.134 20 C 0.141 3.859 21 H 0.004 0.996 22 H 0.082 0.918 23 H 0.025 0.975 24 H 0.259 0.741 25 H 0.176 0.824 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.172 1.296 11.450 12.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.089 3.911 3 H 0.048 0.952 4 C -0.538 4.538 5 H 0.072 0.928 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.717 3.283 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.205 1.205 12 C -0.180 4.180 13 C -0.131 4.131 14 N -0.140 5.140 15 N -0.173 5.173 16 C -0.074 4.074 17 C -0.089 4.089 18 C -0.162 4.162 19 C -0.172 4.172 20 C 0.019 3.981 21 H 0.023 0.977 22 H 0.101 0.899 23 H 0.044 0.956 24 H 0.069 0.931 25 H 0.193 0.807 26 H 0.107 0.893 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.406 0.529 12.337 13.480 hybrid contribution 0.169 -0.036 -1.507 1.517 sum 5.575 0.492 10.830 12.191 Atomic orbital electron populations 1.21749 0.98264 0.98997 0.99740 1.17190 0.92056 0.94544 0.87284 0.95164 1.21126 1.30490 1.12103 0.90078 0.92831 1.24943 0.95259 0.95073 0.98756 1.69877 1.37075 1.23081 1.23238 0.86706 0.79136 0.79860 0.82562 1.20341 1.21403 1.20470 1.20486 1.03476 0.94595 0.99470 1.23760 0.99218 0.96866 0.93226 1.77077 1.14867 1.05906 1.16121 1.48312 1.41692 1.08377 1.18884 1.20667 1.02146 0.92462 0.92090 1.20293 1.01210 0.91072 0.96293 1.21668 0.99564 0.97871 0.97053 1.21921 0.98342 0.94281 1.02703 1.21509 0.92860 0.98744 0.84978 0.97655 0.89916 0.95555 0.93092 0.80737 0.89347 0.89896 0.90866 0.91627 0.90784 0.89888 0.90112 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.86 37.16 0.33 -2.87 16 2 C 0.11 2.76 2.64 -92.92 -0.24 2.51 16 3 H 0.03 0.81 7.37 -51.93 -0.38 0.43 16 4 C -0.50 -13.81 8.42 -34.44 -0.29 -14.10 16 5 H 0.05 1.50 7.73 -52.49 -0.41 1.09 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -25.45 11.32 55.43 0.63 -24.82 16 8 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C -0.17 -3.87 4.73 -105.17 -0.50 -4.37 16 13 C 0.05 1.19 11.54 -17.22 -0.20 1.00 16 14 N -0.32 -6.69 12.62 30.70 0.39 -6.30 16 15 N -0.39 -7.23 4.04 -56.94 -0.23 -7.46 16 16 C 0.05 1.00 6.58 -82.22 -0.54 0.46 16 17 C -0.05 -0.80 5.69 -27.57 -0.16 -0.95 16 18 C -0.12 -1.46 5.97 -26.42 -0.16 -1.62 16 19 C -0.13 -1.46 5.93 -26.51 -0.16 -1.62 16 20 C 0.14 1.89 7.28 -3.85 -0.03 1.86 16 21 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 22 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 23 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.18 3.59 8.06 -52.49 -0.42 3.16 16 26 H 0.09 1.43 7.94 -51.93 -0.41 1.02 16 27 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 30 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 270.37 15.07 4.07 4.07 Total: -1.00 -30.76 270.37 -7.07 -37.83 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -4.87 Total: -1.67 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -2.04 Total: -18.14 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.78 Total: -38.58 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.76 -7.07 -37.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261235281.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.409 kcal (2) G-P(sol) polarization free energy of solvation -30.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds