Wall clock time and date at job start Mon Mar 30 2020 02:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.72208 * 2 1 4 4 C 1.53282 * 109.60057 * 239.60757 * 2 1 3 5 5 C 1.53115 * 109.66667 * 189.44996 * 4 2 1 6 6 C 1.53492 * 109.30828 * 69.93094 * 5 4 2 7 7 C 1.50707 * 108.06155 * 311.29651 * 6 5 4 8 8 C 1.33863 * 128.68474 * 195.74735 * 7 6 5 9 9 C 1.50699 * 126.09616 * 359.93545 * 8 7 6 10 10 C 1.50705 * 109.46832 * 90.00572 * 9 8 7 11 11 H 1.07998 * 120.00216 * 359.97438 * 10 9 8 12 12 C 1.37886 * 119.99737 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99959 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99731 * 179.97438 * 12 10 9 15 15 H 1.48492 * 109.47153 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46902 * 120.00122 * 14 12 10 17 17 H 1.48501 * 109.47159 * 240.00032 * 14 12 10 18 18 N 1.34426 * 107.79926 * 179.90275 * 8 7 6 19 19 C 1.30785 * 109.31843 * 0.02562 * 18 8 7 20 20 N 1.34401 * 108.55464 * 0.05775 * 19 18 8 21 21 H 1.08999 * 109.47054 * 180.39002 * 1 2 3 22 22 H 1.08998 * 109.47615 * 300.39366 * 1 2 3 23 23 H 1.09004 * 109.47405 * 60.39297 * 1 2 3 24 24 H 1.09002 * 109.43441 * 69.39878 * 4 2 1 25 25 H 1.08996 * 109.42822 * 309.49459 * 4 2 1 26 26 H 1.08996 * 109.49879 * 189.88749 * 5 4 2 27 27 H 1.09007 * 109.49923 * 309.94926 * 5 4 2 28 28 H 1.08999 * 109.74430 * 70.93823 * 6 5 4 29 29 H 1.09004 * 109.74321 * 191.65471 * 6 5 4 30 30 H 1.09000 * 109.47124 * 210.00253 * 9 8 7 31 31 H 1.08997 * 109.47408 * 330.00426 * 9 8 7 32 32 H 0.97004 * 119.99676 * 180.02562 * 13 12 10 33 33 H 1.08006 * 125.72005 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8978 1.0261 0.0000 4 6 2.0442 -0.7305 -1.2456 5 6 3.5569 -0.9390 -1.1330 6 6 3.8463 -1.9763 -0.0393 7 6 3.0609 -1.5924 1.1884 8 6 3.2136 -2.0211 2.4472 9 6 4.2382 -3.0161 2.9282 10 6 5.4917 -2.2875 3.3391 11 1 5.5417 -1.2116 3.2595 12 6 6.5749 -2.9945 3.8166 13 7 6.5143 -4.3047 3.9131 14 14 8.1290 -2.0914 4.3253 15 1 7.9431 -0.6324 4.1208 16 1 8.4097 -2.3580 5.7590 17 1 9.2695 -2.5659 3.5010 18 7 2.2905 -1.4052 3.2059 19 6 1.5731 -0.6107 2.4546 20 7 2.0198 -0.6991 1.1901 21 1 -0.3633 -1.0276 0.0070 22 1 -0.3634 0.5199 0.8864 23 1 -0.3634 0.5077 -0.8935 24 1 1.8251 -0.1348 -2.1317 25 1 1.5499 -1.6985 -1.3280 26 1 3.9468 -1.2965 -2.0860 27 1 4.0362 0.0056 -0.8752 28 1 3.5385 -2.9652 -0.3790 29 1 4.9116 -1.9806 0.1915 30 1 3.8398 -3.5638 3.7823 31 1 4.4709 -3.7151 2.1249 32 1 7.2762 -4.8020 4.2494 33 1 0.7580 0.0117 2.7934 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261236733.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:08 Heat of formation + Delta-G solvation = 18.272828 kcal Electronic energy + Delta-G solvation = -15003.142348 eV Core-core repulsion = 12642.018608 eV Total energy + Delta-G solvation = -2361.123740 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.14148 -37.90714 -35.60977 -34.39190 -31.96563 -31.33391 -28.51082 -27.35685 -25.03160 -23.73022 -22.83382 -20.74779 -19.80474 -18.51694 -17.76095 -16.51733 -16.36601 -15.52619 -15.40755 -14.94475 -14.56348 -14.38715 -14.02308 -13.89862 -13.47480 -13.29732 -13.09032 -12.63953 -12.55241 -12.43808 -11.96274 -11.93395 -11.71770 -11.55903 -11.48506 -10.68643 -10.51463 -10.15305 -8.95420 -8.15862 -6.29131 1.29130 1.37700 1.39465 1.52658 2.04375 2.31884 2.51020 3.12423 3.58825 3.73515 3.82811 3.89296 4.09309 4.20854 4.32795 4.45730 4.66456 4.74274 4.80414 4.81517 4.95731 4.98800 5.08671 5.15371 5.22212 5.31456 5.33783 5.58407 5.64532 5.77381 5.99596 6.28012 6.62494 6.80432 7.37706 7.41856 8.93242 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.040687 B = 0.007764 C = 0.007221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.007408 B = 3605.302410 C = 3876.596129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.121 3.879 3 H 0.101 0.899 4 C -0.122 4.122 5 C -0.116 4.116 6 C -0.042 4.042 7 C -0.037 4.037 8 C 0.001 3.999 9 C 0.108 3.892 10 C -0.517 4.517 11 H 0.042 0.958 12 C 0.004 3.996 13 N -0.932 5.932 14 Si 0.968 3.032 15 H -0.270 1.270 16 H -0.276 1.276 17 H -0.268 1.268 18 N -0.548 5.548 19 C 0.176 3.824 20 N -0.451 5.451 21 H 0.052 0.948 22 H 0.071 0.929 23 H 0.106 0.894 24 H 0.120 0.880 25 H 0.067 0.933 26 H 0.097 0.903 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.064 0.936 30 H -0.014 1.014 31 H 0.011 0.989 32 H 0.266 0.734 33 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.690 10.593 -14.118 20.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.020 3.980 3 H 0.118 0.882 4 C -0.159 4.159 5 C -0.154 4.154 6 C -0.081 4.081 7 C -0.150 4.150 8 C -0.126 4.126 9 C 0.070 3.930 10 C -0.556 4.556 11 H 0.060 0.940 12 C -0.194 4.194 13 N -0.572 5.572 14 Si 0.792 3.208 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.193 1.193 18 N -0.269 5.269 19 C -0.106 4.106 20 N -0.137 5.137 21 H 0.071 0.929 22 H 0.090 0.910 23 H 0.125 0.875 24 H 0.138 0.862 25 H 0.086 0.914 26 H 0.115 0.885 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.005 0.995 31 H 0.030 0.970 32 H 0.075 0.925 33 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -10.779 10.427 -13.364 20.087 hybrid contribution 0.975 0.001 0.179 0.992 sum -9.803 10.428 -13.184 19.459 Atomic orbital electron populations 1.22111 0.91032 1.03045 1.04881 1.21972 0.96915 0.96505 0.82610 0.88158 1.21964 0.95202 1.01727 0.97040 1.21647 0.96768 0.98371 0.98563 1.20170 0.98071 0.99707 0.90129 1.20962 0.96444 1.00009 0.97602 1.20793 0.98504 1.02602 0.90746 1.17222 0.90323 0.91368 0.94111 1.21275 0.98673 0.92844 1.42779 0.93977 1.25921 1.02262 0.95705 0.95505 1.70094 1.32255 1.07363 1.47483 0.85369 0.78717 0.78583 0.78171 1.19467 1.20200 1.19333 1.70278 1.09064 1.12441 1.35085 1.25239 1.02521 1.02589 0.80225 1.45610 1.25501 1.33228 1.09338 0.92864 0.91015 0.87542 0.86167 0.91378 0.88461 0.91977 0.90659 0.91705 0.99549 0.97045 0.92532 0.74730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.01 71.98 0.65 -1.46 16 2 C 0.12 2.41 3.63 45.09 0.16 2.57 16 3 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 4 C -0.12 -2.13 5.22 30.73 0.16 -1.96 16 5 C -0.12 -2.64 5.95 30.80 0.18 -2.46 16 6 C -0.04 -1.46 6.00 30.02 0.18 -1.28 16 7 C -0.04 -1.53 6.56 40.73 0.27 -1.26 16 8 C 0.00 0.03 6.28 41.17 0.26 0.29 16 9 C 0.11 6.54 5.36 29.10 0.16 6.69 16 10 C -0.52 -32.45 9.10 25.60 0.23 -32.22 16 11 H 0.04 2.66 7.74 -2.91 -0.02 2.64 16 12 C 0.00 0.22 5.46 84.66 0.46 0.68 16 13 N -0.93 -59.17 13.29 21.45 0.28 -58.88 16 14 Si 0.97 46.93 29.54 68.60 2.03 48.95 16 15 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 16 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 N -0.55 -26.90 11.27 -188.96 -2.13 -29.03 16 19 C 0.18 6.31 11.90 180.38 2.15 8.45 16 20 N -0.45 -14.67 2.98 -492.52 -1.47 -16.14 16 21 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.07 0.91 7.58 -2.39 -0.02 0.89 16 23 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.07 1.29 8.09 -2.39 -0.02 1.27 16 26 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.06 1.46 8.12 -2.38 -0.02 1.44 16 28 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.06 2.57 8.14 -2.38 -0.02 2.55 16 30 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 31 H 0.01 0.70 8.01 -2.39 -0.02 0.68 16 32 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 33 H 0.24 5.82 7.70 -2.91 -0.02 5.80 16 Total: -1.00 -79.75 273.56 4.65 -75.10 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: 1.07 Total: 1.95 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 4.86 Total: -21.95 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -3.31 Total: -104.05 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal Total: -79.75 4.65 -75.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261236733.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.371 kcal (2) G-P(sol) polarization free energy of solvation -79.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds