Wall clock time and date at job start Mon Mar 30 2020 03:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00301 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00817 * 8 6 4 12 12 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 13 13 N 1.34426 * 126.10342 * 60.01924 * 12 2 1 14 14 C 1.30785 * 109.32133 * 179.97438 * 13 12 2 15 15 N 1.34404 * 108.55498 * 359.94104 * 14 13 12 16 16 C 1.33858 * 126.09652 * 239.71466 * 12 2 1 17 17 C 1.50710 * 128.68653 * 0.76184 * 16 12 2 18 18 C 1.53495 * 108.11930 * 163.86136 * 17 16 12 19 19 C 1.53118 * 109.30312 * 48.49616 * 18 17 16 20 20 C 1.46472 * 128.44503 * 180.18969 * 15 14 13 21 21 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 22 22 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 23 23 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 24 24 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 25 25 H 1.08003 * 125.72487 * 179.90574 * 14 13 12 26 26 H 1.09008 * 109.87769 * 44.10649 * 17 16 12 27 27 H 1.09005 * 109.59886 * 283.45443 * 17 16 12 28 28 H 1.09000 * 109.49365 * 288.55269 * 18 17 16 29 29 H 1.08996 * 109.50427 * 168.44828 * 18 17 16 30 30 H 1.09002 * 109.42857 * 170.00965 * 19 18 17 31 31 H 1.09003 * 109.43437 * 50.15379 * 19 18 17 32 32 H 1.09004 * 109.60072 * 282.44377 * 20 15 14 33 33 H 1.09002 * 109.59854 * 42.92140 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8277 -0.4193 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 6 2.0324 -0.7105 1.2304 13 7 1.7848 -1.9891 1.5633 14 6 2.3805 -2.2648 2.6945 15 7 3.0287 -1.1653 3.1157 16 6 2.8096 -0.1825 2.1838 17 6 3.3564 1.2182 2.2850 18 6 3.8346 1.4411 3.7264 19 6 4.7071 0.2594 4.1587 20 6 3.8365 -0.9915 4.3251 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7093 1.1618 -3.4844 25 1 2.3554 -3.2163 3.2049 26 1 2.5764 1.9392 2.0402 27 1 4.1939 1.3344 1.5971 28 1 2.9718 1.5175 4.3882 29 1 4.4165 2.3612 3.7787 30 1 5.1905 0.4934 5.1072 31 1 5.4681 0.0740 3.4006 32 1 3.1816 -0.8699 5.1879 33 1 4.4743 -1.8640 4.4673 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261242297.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:18 Heat of formation + Delta-G solvation = 24.223918 kcal Electronic energy + Delta-G solvation = -15102.075995 eV Core-core repulsion = 12741.210314 eV Total energy + Delta-G solvation = -2360.865681 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.03382 -37.51855 -36.25081 -33.90437 -31.99036 -31.20071 -28.06954 -27.15177 -25.04797 -23.67385 -22.84560 -20.69498 -19.70936 -18.22286 -17.54983 -16.68683 -16.41540 -15.49042 -15.03609 -14.94694 -14.61049 -14.56210 -14.19776 -14.03297 -13.39511 -12.96911 -12.83133 -12.61648 -12.30755 -12.11797 -11.92889 -11.89785 -11.73636 -11.54654 -11.04093 -10.48401 -10.40600 -10.07578 -8.87609 -8.04281 -6.15904 1.32986 1.39726 1.42668 1.50616 2.12897 2.39959 2.55790 3.21245 3.68945 3.85379 3.89140 3.96539 4.13737 4.43212 4.49373 4.54912 4.67760 4.80446 4.88879 4.93362 5.00484 5.03785 5.13265 5.26013 5.31934 5.34952 5.59210 5.63919 5.92518 5.96563 6.17187 6.44970 6.66608 6.88745 7.48475 7.51566 8.99941 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.038330 B = 0.008139 C = 0.007876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.319275 B = 3439.434044 C = 3554.368955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.117 3.883 3 H 0.015 0.985 4 C -0.509 4.509 5 H 0.034 0.966 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.954 3.046 9 H -0.278 1.278 10 H -0.276 1.276 11 H -0.273 1.273 12 C 0.013 3.987 13 N -0.537 5.537 14 C 0.168 3.832 15 N -0.459 5.459 16 C -0.050 4.050 17 C -0.042 4.042 18 C -0.114 4.114 19 C -0.128 4.128 20 C 0.099 3.901 21 H 0.017 0.983 22 H 0.061 0.939 23 H 0.017 0.983 24 H 0.262 0.738 25 H 0.238 0.762 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.120 0.880 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.084 -0.227 16.272 18.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.097 3.903 3 H 0.033 0.967 4 C -0.547 4.547 5 H 0.053 0.947 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.779 3.221 9 H -0.204 1.204 10 H -0.201 1.201 11 H -0.198 1.198 12 C -0.115 4.115 13 N -0.257 5.257 14 C -0.114 4.114 15 N -0.144 5.144 16 C -0.163 4.163 17 C -0.081 4.081 18 C -0.152 4.152 19 C -0.166 4.166 20 C -0.022 4.022 21 H 0.036 0.964 22 H 0.080 0.920 23 H 0.036 0.964 24 H 0.071 0.929 25 H 0.254 0.746 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.113 0.887 30 H 0.138 0.862 31 H 0.080 0.920 32 H 0.118 0.882 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.624 -0.660 15.835 17.587 hybrid contribution 0.372 -0.078 -0.801 0.887 sum 7.996 -0.737 15.034 17.044 Atomic orbital electron populations 1.21483 0.98192 0.98240 0.98990 1.16985 0.92319 0.92918 0.88031 0.96715 1.21202 1.30531 1.11445 0.91530 0.94741 1.25681 0.95527 0.95881 1.01501 1.69985 1.37847 1.24054 1.23959 0.85686 0.78726 0.78618 0.79031 1.20406 1.20083 1.19783 1.20842 1.01254 0.91343 0.98028 1.70265 1.25452 1.16193 1.13747 1.25418 0.97438 0.94161 0.94355 1.45489 1.39500 1.09818 1.19600 1.21060 1.07246 0.94348 0.93652 1.20176 0.99938 0.88797 0.99178 1.21632 1.00213 0.99651 0.93706 1.21892 0.97541 0.92995 1.04162 1.22313 0.94167 1.01309 0.84401 0.96422 0.92017 0.96393 0.92877 0.74645 0.91219 0.91376 0.91355 0.88733 0.86188 0.92025 0.88224 0.87154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.19 8.95 71.98 0.64 -5.55 16 2 C 0.12 6.64 2.69 -12.29 -0.03 6.61 16 3 H 0.01 0.88 7.45 -2.39 -0.02 0.86 16 4 C -0.51 -31.28 8.55 25.60 0.22 -31.06 16 5 H 0.03 2.19 7.74 -2.91 -0.02 2.17 16 6 C 0.01 0.71 5.30 84.66 0.45 1.15 16 7 N -0.92 -55.72 11.32 21.45 0.24 -55.48 16 8 Si 0.95 46.98 29.54 68.60 2.03 49.00 16 9 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 11 H -0.27 -13.02 7.11 99.48 0.71 -12.32 16 12 C 0.01 0.65 5.53 41.16 0.23 0.87 16 13 N -0.54 -25.78 11.27 -188.96 -2.13 -27.91 16 14 C 0.17 5.91 12.66 180.38 2.28 8.19 16 15 N -0.46 -14.44 3.13 -514.79 -1.61 -16.06 16 16 C -0.05 -1.99 6.56 40.73 0.27 -1.73 16 17 C -0.04 -1.38 5.73 30.02 0.17 -1.21 16 18 C -0.11 -2.38 5.96 30.80 0.18 -2.20 16 19 C -0.13 -2.12 5.92 30.74 0.18 -1.94 16 20 C 0.10 1.79 7.00 86.49 0.61 2.40 16 21 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.06 3.64 6.07 -2.39 -0.01 3.63 16 23 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.26 15.01 8.31 -92.70 -0.77 14.23 16 25 H 0.24 5.67 8.06 -2.91 -0.02 5.64 16 26 H 0.07 2.41 7.99 -2.38 -0.02 2.40 16 27 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 28 H 0.07 1.38 8.12 -2.39 -0.02 1.36 16 29 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.19 8.11 -2.39 -0.02 1.17 16 32 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -76.22 270.29 4.81 -71.41 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: 1.08 Total: 3.48 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: 5.20 Total: -24.45 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -3.50 Total: -99.45 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.00 kcal Total: -76.22 4.81 -71.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261242297.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.635 kcal (2) G-P(sol) polarization free energy of solvation -76.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds