Wall clock time and date at job start Mon Mar 30 2020 03:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47255 * 2 1 4 4 C 1.50704 * 109.47097 * 240.00219 * 2 1 3 5 5 H 1.08003 * 119.99986 * 239.99840 * 4 2 1 6 6 C 1.37871 * 120.00166 * 60.00186 * 4 2 1 7 7 N 1.31514 * 120.00165 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00192 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46780 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47304 * 119.99536 * 8 6 4 11 11 H 1.48502 * 109.47187 * 239.99788 * 8 6 4 12 12 C 1.50700 * 109.47179 * 120.00411 * 2 1 3 13 13 C 1.38885 * 120.33050 * 240.00374 * 12 2 1 14 14 C 1.38298 * 118.50320 * 180.02562 * 13 12 2 15 15 C 1.39141 * 119.09793 * 359.97438 * 14 13 12 16 16 N 1.39001 * 119.70765 * 180.02562 * 15 14 13 17 17 C 1.46504 * 120.00068 * 4.99061 * 16 15 14 18 18 C 1.46497 * 120.00226 * 184.99859 * 16 15 14 19 19 N 1.32393 * 120.58896 * 359.97438 * 15 14 13 20 20 C 1.31975 * 121.62238 * 0.02562 * 19 15 14 21 21 H 1.09000 * 109.47004 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47523 * 299.99967 * 1 2 3 23 23 H 1.09005 * 109.47018 * 60.00062 * 1 2 3 24 24 H 0.96996 * 120.00390 * 180.02562 * 7 6 4 25 25 H 1.07994 * 120.75285 * 359.73663 * 13 12 2 26 26 H 1.08004 * 120.45551 * 179.97438 * 14 13 12 27 27 H 1.09004 * 109.46484 * 90.00444 * 17 16 15 28 28 H 1.08999 * 109.47288 * 210.00271 * 17 16 15 29 29 H 1.09000 * 109.47029 * 330.01073 * 17 16 15 30 30 H 1.09004 * 109.47217 * 59.99160 * 18 16 15 31 31 H 1.09002 * 109.47580 * 179.97438 * 18 16 15 32 32 H 1.09007 * 109.46943 * 299.99610 * 18 16 15 33 33 H 1.07998 * 119.57374 * 180.02562 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 3.1464 -2.2870 -3.6038 10 1 1.1661 -1.5866 -4.8161 11 1 3.1466 -0.1873 -4.8166 12 6 2.0323 -0.7105 1.2304 13 6 2.8311 -0.0422 2.1492 14 6 3.2716 -0.7308 3.2648 15 6 2.9011 -2.0620 3.4282 16 7 3.3362 -2.7660 4.5449 17 6 4.0885 -2.0781 5.5972 18 6 3.0426 -4.1958 4.6697 19 7 2.1371 -2.6638 2.5299 20 6 1.7024 -2.0315 1.4561 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7082 1.1609 -3.4844 25 1 3.1061 0.9905 1.9937 26 1 3.8946 -0.2420 3.9992 27 1 3.3957 -1.6848 6.3412 28 1 4.7726 -2.7807 6.0733 29 1 4.6568 -1.2571 5.1601 30 1 3.4861 -4.7324 3.8309 31 1 3.4605 -4.5725 5.6033 32 1 1.9630 -4.3466 4.6676 33 1 1.0804 -2.5546 0.7449 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261254307.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:45 Heat of formation + Delta-G solvation = 22.325699 kcal Electronic energy + Delta-G solvation = -14620.945578 eV Core-core repulsion = 12259.997584 eV Total energy + Delta-G solvation = -2360.947994 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.13149 -37.80878 -35.95292 -33.56329 -32.66945 -29.79927 -28.98303 -27.18646 -25.90646 -24.31334 -22.85689 -21.33553 -18.42085 -18.24589 -17.25480 -16.76207 -16.11924 -15.62527 -15.40273 -14.96011 -14.48133 -14.14939 -14.03410 -13.62434 -13.38655 -13.22310 -12.99878 -12.85493 -12.78071 -12.64467 -12.21113 -12.11155 -11.40495 -11.11420 -10.55410 -10.48640 -10.41409 -10.11085 -8.28466 -8.03812 -6.20716 0.48602 0.72486 1.41072 1.43706 1.54823 2.15975 2.45010 3.12946 3.21645 3.73339 4.10814 4.31366 4.32210 4.47966 4.52848 4.60045 4.64034 4.78984 4.85623 4.94799 4.99970 5.04242 5.11217 5.27290 5.30296 5.54698 5.63195 5.80731 5.97769 6.10131 6.22117 6.39091 6.52630 6.87638 7.35168 7.47507 8.97126 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.044947 B = 0.006744 C = 0.006414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.803018 B = 4151.108492 C = 4364.492138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.085 3.915 3 H 0.009 0.991 4 C -0.519 4.519 5 H 0.046 0.954 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.952 3.048 9 H -0.273 1.273 10 H -0.278 1.278 11 H -0.280 1.280 12 C -0.160 4.160 13 C -0.055 4.055 14 C -0.230 4.230 15 C 0.362 3.638 16 N -0.630 5.630 17 C 0.093 3.907 18 C 0.110 3.890 19 N -0.559 5.559 20 C 0.135 3.865 21 H 0.029 0.971 22 H 0.023 0.977 23 H 0.060 0.940 24 H 0.262 0.738 25 H 0.138 0.862 26 H 0.158 0.842 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.101 0.899 32 H 0.040 0.960 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.432 -4.910 14.586 16.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.065 3.935 3 H 0.027 0.973 4 C -0.558 4.558 5 H 0.065 0.935 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.778 3.222 9 H -0.197 1.197 10 H -0.204 1.204 11 H -0.205 1.205 12 C -0.164 4.164 13 C -0.081 4.081 14 C -0.254 4.254 15 C 0.128 3.872 16 N -0.347 5.347 17 C -0.048 4.048 18 C -0.033 4.033 19 N -0.277 5.277 20 C -0.020 4.020 21 H 0.049 0.951 22 H 0.042 0.958 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.155 0.845 26 H 0.176 0.824 27 H 0.075 0.925 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.119 0.881 32 H 0.059 0.941 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.191 -5.772 14.749 16.667 hybrid contribution 0.233 0.601 -1.398 1.540 sum 5.424 -5.172 13.351 15.311 Atomic orbital electron populations 1.21638 0.97592 0.99106 0.99614 1.17545 0.92881 0.93876 0.89158 0.97326 1.21423 1.30884 1.12126 0.91317 0.93528 1.25666 0.95290 0.95692 1.01595 1.70005 1.37586 1.24023 1.23920 0.85603 0.78220 0.78657 0.79762 1.19724 1.20389 1.20547 1.21077 1.00958 0.96049 0.98321 1.21500 0.94042 1.00197 0.92327 1.21602 1.07738 0.94402 1.01689 1.18627 0.91259 0.89244 0.88080 1.46344 1.59921 1.09394 1.19061 1.21898 0.95597 0.98480 0.88875 1.21466 1.00350 0.79491 1.01959 1.67130 1.15831 1.39742 1.05012 1.22096 0.95975 0.91691 0.92273 0.95145 0.95798 0.92122 0.92905 0.84453 0.82423 0.92480 0.88855 0.90829 0.94364 0.88089 0.94078 0.84067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.02 8.78 71.98 0.63 -5.39 16 2 C 0.08 4.33 2.49 -12.29 -0.03 4.30 16 3 H 0.01 0.47 7.93 -2.39 -0.02 0.45 16 4 C -0.52 -28.94 8.25 25.60 0.21 -28.73 16 5 H 0.05 2.63 7.61 -2.91 -0.02 2.61 16 6 C 0.02 0.90 5.30 84.65 0.45 1.35 16 7 N -0.92 -52.69 11.32 21.45 0.24 -52.45 16 8 Si 0.95 44.11 29.54 68.60 2.03 46.14 16 9 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 C -0.16 -7.14 4.75 -19.76 -0.09 -7.24 16 13 C -0.05 -2.09 9.79 22.44 0.22 -1.87 16 14 C -0.23 -7.49 9.27 22.50 0.21 -7.28 16 15 C 0.36 12.57 7.37 133.07 0.98 13.55 16 16 N -0.63 -16.59 3.39 -753.95 -2.56 -19.14 16 17 C 0.09 1.55 10.25 127.77 1.31 2.86 16 18 C 0.11 2.51 10.19 127.77 1.30 3.81 16 19 N -0.56 -22.54 9.57 -193.27 -1.85 -24.39 16 20 C 0.14 5.90 9.89 84.62 0.84 6.74 16 21 H 0.03 1.43 7.40 -2.39 -0.02 1.41 16 22 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.06 3.28 6.07 -2.38 -0.01 3.27 16 24 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 25 H 0.14 4.76 8.00 -2.91 -0.02 4.73 16 26 H 0.16 3.85 6.03 -2.91 -0.02 3.83 16 27 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.09 1.05 7.92 -2.39 -0.02 1.03 16 29 H 0.07 1.16 5.98 -2.39 -0.01 1.15 16 30 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.10 1.47 7.79 -2.39 -0.02 1.45 16 32 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.14 6.29 7.57 -2.91 -0.02 6.27 16 Total: -1.00 -64.80 274.65 4.97 -59.83 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 1.08 Total: 7.89 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: 6.02 Total: -17.88 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -4.16 Total: -95.98 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -64.80 4.97 -59.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254307.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.155 kcal (2) G-P(sol) polarization free energy of solvation -64.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds