Wall clock time and date at job start Mon Mar 30 2020 03:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.46873 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 13 13 C 1.38873 * 120.33615 * 119.72473 * 12 2 1 14 14 C 1.38309 * 118.50530 * 179.73626 * 13 12 2 15 15 C 1.39132 * 119.09450 * 0.53261 * 14 13 12 16 16 N 1.39000 * 119.70641 * 179.70164 * 15 14 13 17 17 C 1.46500 * 119.99941 * 5.02496 * 16 15 14 18 18 C 1.46505 * 120.00086 * 185.02289 * 16 15 14 19 19 N 1.32405 * 120.58937 * 359.73007 * 15 14 13 20 20 C 1.31973 * 121.62206 * 359.97438 * 19 15 14 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 25 25 H 1.08002 * 120.75056 * 359.97096 * 13 12 2 26 26 H 1.08002 * 120.45243 * 180.23755 * 14 13 12 27 27 H 1.08998 * 109.46783 * 89.99743 * 17 16 15 28 28 H 1.08996 * 109.47312 * 209.99354 * 17 16 15 29 29 H 1.09001 * 109.47059 * 329.99924 * 17 16 15 30 30 H 1.08994 * 109.47200 * 90.00005 * 18 16 15 31 31 H 1.09004 * 109.46984 * 210.00709 * 18 16 15 32 32 H 1.08999 * 109.46838 * 330.00132 * 18 16 15 33 33 H 1.07995 * 119.57147 * 179.97438 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8271 -0.4200 5.2204 11 1 1.8261 -2.5204 4.0076 12 6 2.0324 -0.7103 -1.2306 13 6 2.8265 -0.0404 -2.1521 14 6 3.2712 -0.7304 -3.2652 15 6 2.9007 -2.0615 -3.4287 16 7 3.3354 -2.7653 -4.5458 17 6 4.2681 -2.1412 -5.4875 18 6 2.8607 -4.1311 -4.7815 19 7 2.1374 -2.6637 -2.5299 20 6 1.7035 -2.0318 -1.4557 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7096 1.1617 3.4844 25 1 3.0940 0.9950 -2.0010 26 1 3.8936 -0.2413 -3.9999 27 1 5.2918 -2.3551 -5.1804 28 1 4.0975 -2.5413 -6.4869 29 1 4.1090 -1.0629 -5.4957 30 1 1.9506 -4.1012 -5.3805 31 1 3.6272 -4.6955 -5.3128 32 1 2.6515 -4.6129 -3.8264 33 1 1.0821 -2.5551 -0.7441 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261254308.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:48 Heat of formation + Delta-G solvation = 40.021387 kcal Electronic energy + Delta-G solvation = -14620.465952 eV Core-core repulsion = 12260.285301 eV Total energy + Delta-G solvation = -2360.180651 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.67169 -36.45511 -34.17007 -31.87418 -30.98445 -28.20736 -28.01279 -25.12497 -24.53449 -22.78605 -21.33899 -19.64563 -17.02360 -16.46184 -15.70255 -14.99758 -14.84325 -14.17035 -14.04655 -13.42227 -12.95373 -12.53437 -12.46762 -12.40410 -11.97551 -11.87019 -11.71873 -11.30292 -10.90004 -10.85600 -10.36802 -10.13219 -9.58516 -9.34793 -9.04294 -8.81972 -8.63654 -8.29823 -6.88554 -5.98215 -4.05247 1.99168 2.25253 3.28679 3.33761 3.37954 3.41631 4.43553 4.68168 4.98516 5.23325 5.31907 5.35205 5.44987 5.62630 5.68491 5.75671 5.84308 5.96888 6.04681 6.24227 6.44917 6.72003 6.89404 6.94300 7.17106 7.27001 7.37195 7.39498 7.72890 7.86235 7.96902 8.12112 8.42583 8.82155 8.97432 9.59545 11.06916 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.044863 B = 0.006722 C = 0.006435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.972991 B = 4164.634247 C = 4350.309351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.082 3.918 3 H 0.033 0.967 4 C -0.508 4.508 5 H 0.056 0.944 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.892 3.108 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.276 1.276 12 C -0.132 4.132 13 C -0.051 4.051 14 C -0.240 4.240 15 C 0.367 3.633 16 N -0.630 5.630 17 C 0.102 3.898 18 C 0.106 3.894 19 N -0.544 5.544 20 C 0.145 3.855 21 H 0.085 0.915 22 H 0.028 0.972 23 H 0.007 0.993 24 H 0.261 0.739 25 H 0.125 0.875 26 H 0.120 0.880 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.038 0.962 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.891 -4.253 -12.636 13.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.063 3.937 3 H 0.051 0.949 4 C -0.546 4.546 5 H 0.074 0.926 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.720 3.280 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 C -0.135 4.135 13 C -0.077 4.077 14 C -0.265 4.265 15 C 0.136 3.864 16 N -0.348 5.348 17 C -0.041 4.041 18 C -0.037 4.037 19 N -0.261 5.261 20 C -0.011 4.011 21 H 0.103 0.897 22 H 0.047 0.953 23 H 0.026 0.974 24 H 0.071 0.929 25 H 0.143 0.857 26 H 0.138 0.862 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.630 -5.093 -12.759 14.209 hybrid contribution 0.641 0.427 0.970 1.239 sum 4.271 -4.666 -11.789 13.379 Atomic orbital electron populations 1.21801 0.97782 0.99236 1.00180 1.17709 0.92649 0.95198 0.88148 0.94884 1.21110 1.31159 1.12370 0.89985 0.92617 1.24949 0.95036 0.94985 0.98892 1.69872 1.36684 1.22862 1.23483 0.86659 0.79209 0.79850 0.82314 1.20350 1.21303 1.20201 1.21345 0.98308 0.95633 0.98251 1.21312 0.94663 0.99494 0.92231 1.21284 1.09023 0.94333 1.01818 1.18175 0.92533 0.88278 0.87453 1.45926 1.50351 1.14837 1.23734 1.21548 0.92050 0.98708 0.91825 1.21406 0.97802 0.82427 1.02092 1.67097 1.15477 1.39063 1.04424 1.22306 0.95332 0.91902 0.91584 0.89651 0.95313 0.97364 0.92921 0.85720 0.86200 0.93757 0.91838 0.91361 0.94309 0.92766 0.90431 0.82866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.79 37.16 0.33 -2.85 16 2 C 0.08 2.04 2.49 -92.92 -0.23 1.81 16 3 H 0.03 0.88 7.93 -51.93 -0.41 0.47 16 4 C -0.51 -13.80 8.25 -34.44 -0.28 -14.08 16 5 H 0.06 1.52 7.61 -52.49 -0.40 1.12 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.11 11.32 55.43 0.63 -24.48 16 8 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 C -0.13 -2.90 4.75 -104.46 -0.50 -3.40 16 13 C -0.05 -0.99 9.79 -39.32 -0.39 -1.38 16 14 C -0.24 -4.20 9.27 -39.22 -0.36 -4.57 16 15 C 0.37 6.72 7.37 -155.02 -1.14 5.58 16 16 N -0.63 -9.32 3.39 -189.66 -0.64 -9.96 16 17 C 0.10 1.10 10.28 59.85 0.62 1.71 16 18 C 0.11 1.35 10.50 59.85 0.63 1.98 16 19 N -0.54 -11.00 9.08 -12.44 -0.11 -11.11 16 20 C 0.14 3.10 9.88 -17.57 -0.17 2.92 16 21 H 0.08 2.24 6.07 -51.93 -0.32 1.93 16 22 H 0.03 0.65 7.40 -51.93 -0.38 0.27 16 23 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 24 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.12 2.21 8.00 -52.49 -0.42 1.80 16 26 H 0.12 1.72 6.03 -52.49 -0.32 1.40 16 27 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.53 8.07 -51.93 -0.42 0.11 16 29 H 0.07 0.70 5.98 -51.93 -0.31 0.39 16 30 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.54 8.07 -51.93 -0.42 0.12 16 32 H 0.08 1.12 7.30 -51.93 -0.38 0.74 16 33 H 0.15 3.25 7.57 -52.49 -0.40 2.85 16 LS Contribution 274.09 15.07 4.13 4.13 Total: -1.00 -29.65 274.09 -7.19 -36.84 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -4.57 Total: -1.01 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -1.60 Total: -10.65 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.13 Total: -45.56 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.65 -7.19 -36.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254308.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.865 kcal (2) G-P(sol) polarization free energy of solvation -29.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds