Wall clock time and date at job start Mon Mar 30 2020 03:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.46873 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 13 13 C 1.38873 * 120.33615 * 119.72473 * 12 2 1 14 14 C 1.38309 * 118.50530 * 179.73626 * 13 12 2 15 15 C 1.39132 * 119.09450 * 0.53261 * 14 13 12 16 16 N 1.39000 * 119.70641 * 179.70164 * 15 14 13 17 17 C 1.46500 * 119.99941 * 5.02496 * 16 15 14 18 18 C 1.46505 * 120.00086 * 185.02289 * 16 15 14 19 19 N 1.32405 * 120.58937 * 359.73007 * 15 14 13 20 20 C 1.31973 * 121.62206 * 359.97438 * 19 15 14 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 25 25 H 1.08002 * 120.75056 * 359.97096 * 13 12 2 26 26 H 1.08002 * 120.45243 * 180.23755 * 14 13 12 27 27 H 1.08998 * 109.46783 * 89.99743 * 17 16 15 28 28 H 1.08996 * 109.47312 * 209.99354 * 17 16 15 29 29 H 1.09001 * 109.47059 * 329.99924 * 17 16 15 30 30 H 1.08994 * 109.47200 * 90.00005 * 18 16 15 31 31 H 1.09004 * 109.46984 * 210.00709 * 18 16 15 32 32 H 1.08999 * 109.46838 * 330.00132 * 18 16 15 33 33 H 1.07995 * 119.57147 * 179.97438 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8271 -0.4200 5.2204 11 1 1.8261 -2.5204 4.0076 12 6 2.0324 -0.7103 -1.2306 13 6 2.8265 -0.0404 -2.1521 14 6 3.2712 -0.7304 -3.2652 15 6 2.9007 -2.0615 -3.4287 16 7 3.3354 -2.7653 -4.5458 17 6 4.2681 -2.1412 -5.4875 18 6 2.8607 -4.1311 -4.7815 19 7 2.1374 -2.6637 -2.5299 20 6 1.7035 -2.0318 -1.4557 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7096 1.1617 3.4844 25 1 3.0940 0.9950 -2.0010 26 1 3.8936 -0.2413 -3.9999 27 1 5.2918 -2.3551 -5.1804 28 1 4.0975 -2.5413 -6.4869 29 1 4.1090 -1.0629 -5.4957 30 1 1.9506 -4.1012 -5.3805 31 1 3.6272 -4.6955 -5.3128 32 1 2.6515 -4.6129 -3.8264 33 1 1.0821 -2.5551 -0.7441 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261254308.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:48 Heat of formation + Delta-G solvation = 23.572168 kcal Electronic energy + Delta-G solvation = -14621.179244 eV Core-core repulsion = 12260.285301 eV Total energy + Delta-G solvation = -2360.893943 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.13480 -37.80509 -35.94458 -33.56320 -32.66962 -29.78857 -28.99215 -27.17936 -25.89714 -24.31153 -22.84835 -21.33067 -18.41656 -18.26190 -17.24824 -16.75882 -16.09966 -15.62513 -15.39771 -14.95916 -14.49653 -14.20360 -13.98139 -13.63085 -13.36262 -13.20470 -12.92290 -12.84472 -12.78408 -12.69068 -12.23355 -12.10748 -11.40967 -11.12694 -10.53036 -10.47065 -10.43957 -10.10922 -8.27464 -8.03104 -6.20220 0.48756 0.72519 1.43692 1.44275 1.52276 2.15914 2.45348 3.12987 3.22038 3.73398 4.11554 4.31646 4.33474 4.47931 4.51611 4.58232 4.65939 4.79179 4.86333 4.94604 5.01389 5.06059 5.11401 5.27197 5.30760 5.54896 5.63358 5.81587 5.98053 6.10438 6.22343 6.39411 6.52799 6.87691 7.34508 7.47778 8.97332 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.044863 B = 0.006722 C = 0.006435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.972991 B = 4164.634247 C = 4350.309351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.085 3.915 3 H 0.008 0.992 4 C -0.522 4.522 5 H 0.047 0.953 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.951 3.049 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.272 1.272 12 C -0.160 4.160 13 C -0.054 4.054 14 C -0.231 4.231 15 C 0.363 3.637 16 N -0.630 5.630 17 C 0.094 3.906 18 C 0.102 3.898 19 N -0.559 5.559 20 C 0.136 3.864 21 H 0.060 0.940 22 H 0.029 0.971 23 H 0.023 0.977 24 H 0.262 0.738 25 H 0.137 0.863 26 H 0.158 0.842 27 H 0.055 0.945 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.240 -4.930 -14.460 16.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.066 3.934 3 H 0.026 0.974 4 C -0.560 4.560 5 H 0.065 0.935 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.777 3.223 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.197 1.197 12 C -0.165 4.165 13 C -0.080 4.080 14 C -0.255 4.255 15 C 0.129 3.871 16 N -0.347 5.347 17 C -0.048 4.048 18 C -0.041 4.041 19 N -0.277 5.277 20 C -0.019 4.019 21 H 0.079 0.921 22 H 0.049 0.951 23 H 0.042 0.958 24 H 0.071 0.929 25 H 0.155 0.845 26 H 0.175 0.825 27 H 0.073 0.927 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.994 -5.787 -14.620 16.498 hybrid contribution 0.282 0.594 1.362 1.512 sum 5.276 -5.193 -13.258 15.185 Atomic orbital electron populations 1.21641 0.97595 0.99100 0.99608 1.17534 0.92867 0.93851 0.89142 0.97374 1.21370 1.31056 1.12231 0.91334 0.93494 1.25663 0.95266 0.95685 1.01573 1.69992 1.37514 1.23931 1.24035 0.85726 0.78647 0.78887 0.79081 1.20057 1.20704 1.19750 1.21073 1.00881 0.96152 0.98357 1.21500 0.93973 1.00199 0.92343 1.21593 1.08416 0.93983 1.01547 1.18619 0.91552 0.89032 0.87897 1.46332 1.50084 1.15401 1.22882 1.21856 0.91599 0.99130 0.92257 1.21531 0.99371 0.81713 1.01446 1.67111 1.16657 1.39281 1.04674 1.22099 0.95888 0.91723 0.92231 0.92124 0.95142 0.95810 0.92898 0.84485 0.82472 0.92652 0.88955 0.90689 0.93585 0.89428 0.92639 0.84031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.01 8.79 71.98 0.63 -5.37 16 2 C 0.09 4.36 2.49 -12.29 -0.03 4.33 16 3 H 0.01 0.45 7.93 -2.39 -0.02 0.43 16 4 C -0.52 -29.03 8.25 25.60 0.21 -28.82 16 5 H 0.05 2.63 7.61 -2.91 -0.02 2.61 16 6 C 0.02 0.94 5.30 84.66 0.45 1.39 16 7 N -0.92 -52.65 11.32 21.45 0.24 -52.41 16 8 Si 0.95 44.01 29.54 68.60 2.03 46.04 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 C -0.16 -7.15 4.75 -19.76 -0.09 -7.24 16 13 C -0.05 -2.06 9.79 22.44 0.22 -1.84 16 14 C -0.23 -7.51 9.27 22.50 0.21 -7.30 16 15 C 0.36 12.55 7.37 133.06 0.98 13.53 16 16 N -0.63 -16.60 3.39 -753.97 -2.56 -19.15 16 17 C 0.09 1.59 10.28 127.77 1.31 2.90 16 18 C 0.10 2.32 10.50 127.77 1.34 3.66 16 19 N -0.56 -22.36 9.08 -193.26 -1.75 -24.11 16 20 C 0.14 5.92 9.88 84.62 0.84 6.75 16 21 H 0.06 3.28 6.07 -2.39 -0.01 3.26 16 22 H 0.03 1.43 7.40 -2.39 -0.02 1.41 16 23 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 24 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 25 H 0.14 4.74 8.00 -2.91 -0.02 4.72 16 26 H 0.16 3.84 6.03 -2.91 -0.02 3.83 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.09 1.08 8.07 -2.39 -0.02 1.06 16 29 H 0.07 1.19 5.98 -2.39 -0.01 1.17 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.40 8.07 -2.39 -0.02 1.38 16 32 H 0.05 1.52 7.30 -2.39 -0.02 1.50 16 33 H 0.14 6.27 7.57 -2.91 -0.02 6.25 16 Total: -1.00 -64.17 274.09 5.11 -59.06 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 1.09 Total: 8.60 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 6.07 Total: -18.02 kcal Atomic # 7 Polarization: -91.61 SS G_CDS: -4.07 Total: -95.68 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -64.17 5.11 -59.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254308.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.629 kcal (2) G-P(sol) polarization free energy of solvation -64.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds