Wall clock time and date at job start Mon Mar 30 2020 03:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31033 * 1 3 3 Si 1.86799 * 120.00151 * 2 1 4 4 H 1.48499 * 109.46913 * 240.00014 * 3 2 1 5 5 H 1.48499 * 109.47124 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47233 * 120.00419 * 3 2 1 7 7 C 1.39661 * 119.99655 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.41517 * 120.00462 * 0.02562 * 7 2 1 10 10 C 1.41569 * 126.48738 * 179.97438 * 9 7 2 11 11 C 1.37920 * 107.06916 * 179.97438 * 10 9 7 12 12 C 1.41434 * 131.75988 * 179.97438 * 11 10 9 13 13 C 1.35776 * 119.38282 * 180.02562 * 12 11 10 14 14 C 1.40789 * 119.76600 * 359.97438 * 13 12 11 15 15 C 1.34747 * 120.55908 * 0.02562 * 14 13 12 16 16 Cl 1.73598 * 119.64078 * 179.97438 * 15 14 13 17 17 N 1.37492 * 120.72189 * 359.95580 * 15 14 13 18 18 C 1.35760 * 131.19718 * 179.73206 * 17 15 14 19 19 H 0.97005 * 119.99693 * 0.02562 * 1 2 3 20 20 H 1.08005 * 126.46243 * 359.97438 * 10 9 7 21 21 H 1.08001 * 120.30464 * 359.97438 * 12 11 10 22 22 H 1.07997 * 120.11987 * 180.02562 * 13 12 11 23 23 H 1.08001 * 119.71406 * 180.02562 * 14 13 12 24 24 H 1.07995 * 125.78808 * 0.28473 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2444 1.6177 0.0000 4 1 3.0981 1.6963 -1.2125 5 1 1.2794 2.7464 -0.0006 6 1 3.0982 1.6963 1.2124 7 6 2.0086 -1.2095 0.0005 8 1 3.0886 -1.2096 0.0001 9 6 1.3010 -2.4351 0.0005 10 6 1.8658 -3.7333 0.0005 11 6 0.8184 -4.6305 0.0011 12 6 0.7893 -6.0445 0.0009 13 6 -0.4072 -6.6863 0.0011 14 6 -1.6008 -5.9396 0.0021 15 6 -1.5662 -4.5926 0.0023 16 17 -3.0526 -3.6957 0.0028 17 7 -0.3667 -3.9207 0.0025 18 6 -0.0857 -2.5925 -0.0021 19 1 -0.4850 0.8401 -0.0004 20 1 2.9184 -3.9753 0.0002 21 1 1.7104 -6.6086 -0.0002 22 1 -0.4433 -7.7656 0.0014 23 1 -2.5521 -6.4509 0.0027 24 1 -0.8121 -1.7933 -0.0026 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261257500.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:51 Heat of formation + Delta-G solvation = 53.836969 kcal Electronic energy + Delta-G solvation = -12268.687840 eV Core-core repulsion = 9980.430591 eV Total energy + Delta-G solvation = -2288.257249 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.030 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.62616 -36.42594 -35.43587 -33.33025 -31.66533 -29.07792 -26.39752 -25.58272 -22.13311 -20.78034 -19.65490 -16.97076 -16.53455 -15.51523 -14.96815 -14.47222 -14.35421 -13.68367 -12.99510 -12.26949 -11.68930 -11.68411 -11.32629 -11.24635 -11.10808 -10.95417 -10.54432 -10.31722 -10.04969 -9.87580 -9.48719 -9.01334 -7.34770 -6.62819 -6.13366 -4.26273 1.61542 2.30302 2.40900 3.05116 3.10716 3.13931 3.92930 4.07143 4.16730 4.44625 5.47508 5.50022 5.69852 5.80057 6.04119 6.59447 6.71687 6.83930 6.96449 7.05210 7.26552 7.30370 7.76936 7.92131 8.00928 8.53107 8.71782 8.95235 9.01365 10.32829 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.038171 B = 0.009489 C = 0.007620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.364154 B = 2949.949378 C = 3673.471941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.061 3.939 3 Si 0.922 3.078 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.424 4.424 8 H 0.078 0.922 9 C 0.067 3.933 10 C -0.264 4.264 11 C 0.024 3.976 12 C -0.097 4.097 13 C -0.155 4.155 14 C -0.170 4.170 15 C 0.120 3.880 16 Cl -0.052 7.052 17 N -0.335 5.335 18 C -0.120 4.120 19 H 0.278 0.722 20 H 0.124 0.876 21 H 0.126 0.874 22 H 0.120 0.880 23 H 0.132 0.868 24 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.599 -5.614 -0.001 6.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.152 4.152 3 Si 0.747 3.253 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.456 4.456 8 H 0.096 0.904 9 C 0.063 3.937 10 C -0.292 4.292 11 C -0.075 4.075 12 C -0.117 4.117 13 C -0.176 4.176 14 C -0.193 4.193 15 C -0.012 4.012 16 Cl -0.024 7.024 17 N -0.002 5.002 18 C -0.250 4.250 19 H 0.089 0.911 20 H 0.142 0.858 21 H 0.144 0.856 22 H 0.138 0.862 23 H 0.150 0.850 24 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -3.123 -5.310 0.002 6.160 hybrid contribution 0.148 0.823 0.002 0.836 sum -2.975 -4.487 0.004 5.384 Atomic orbital electron populations 1.69448 1.07372 1.28587 1.39462 1.25825 0.94882 1.01267 0.93184 0.86139 0.79610 0.79912 0.79637 1.19182 1.20493 1.19176 1.18982 0.94155 0.88949 1.43495 0.90429 1.17499 0.90454 0.91925 0.93808 1.20986 0.95700 0.92193 1.20341 1.18664 0.85126 0.91055 1.12687 1.20434 0.98058 0.91275 1.01917 1.20387 0.91358 0.98814 1.07003 1.19963 0.99582 0.89476 1.10291 1.20727 0.80248 0.89742 1.10458 1.98354 1.30027 1.76846 1.97124 1.41688 1.02876 1.08478 1.47129 1.23959 0.99025 0.80048 1.21960 0.91052 0.85841 0.85589 0.86166 0.85039 0.78444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.37 10.30 55.53 0.57 -20.80 14 2 C 0.06 1.56 5.49 -17.36 -0.10 1.46 14 3 Si 0.92 19.08 29.56 -169.99 -5.02 14.06 14 4 H -0.27 -5.46 7.11 56.52 0.40 -5.05 14 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 14 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 14 7 C -0.42 -11.40 9.40 -37.80 -0.36 -11.76 14 8 H 0.08 1.97 7.84 -52.48 -0.41 1.56 14 9 C 0.07 1.83 5.93 -106.88 -0.63 1.19 14 10 C -0.26 -6.56 10.94 -38.43 -0.42 -6.98 14 11 C 0.02 0.56 6.69 -83.92 -0.56 0.00 14 12 C -0.10 -1.86 10.11 -39.25 -0.40 -2.25 14 13 C -0.16 -2.68 10.06 -39.50 -0.40 -3.07 14 14 C -0.17 -3.07 9.71 -39.86 -0.39 -3.46 14 15 C 0.12 2.52 7.23 -16.25 -0.12 2.40 14 16 Cl -0.05 -0.97 28.58 -51.86 -1.48 -2.45 14 17 N -0.33 -8.14 2.94 -56.61 -0.17 -8.31 14 18 C -0.12 -3.21 10.15 -15.32 -0.16 -3.37 14 19 H 0.28 6.66 8.30 -40.82 -0.34 6.32 14 20 H 0.12 2.77 8.06 -52.48 -0.42 2.34 14 21 H 0.13 2.03 8.06 -52.49 -0.42 1.61 14 22 H 0.12 1.64 8.06 -52.49 -0.42 1.21 14 23 H 0.13 1.96 8.06 -52.49 -0.42 1.53 14 24 H 0.20 5.45 5.68 -52.49 -0.30 5.15 14 LS Contribution 232.48 15.07 3.50 3.50 Total: -1.00 -27.81 232.48 -7.65 -35.47 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -1.54 Total: 4.36 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: -3.52 Total: -25.83 kcal Atomic # 7 Polarization: -29.51 SS G_CDS: 0.41 Total: -29.11 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.48 Total: -2.45 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -27.81 -7.65 -35.47 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261257500.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.305 kcal (2) G-P(sol) polarization free energy of solvation -27.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds