Wall clock time and date at job start Mon Mar 30 2020 03:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30702 * 1 3 3 Si 1.86800 * 120.00166 * 2 1 4 4 H 1.48497 * 109.47249 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46737 * 299.99598 * 3 2 1 6 6 H 1.48499 * 109.47360 * 59.99254 * 3 2 1 7 7 C 1.40083 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00027 * 197.49829 * 7 2 1 9 9 C 1.41069 * 120.00070 * 17.50320 * 7 2 1 10 10 C 1.41116 * 120.96383 * 23.42142 * 9 7 2 11 11 C 1.38598 * 119.74980 * 180.02562 * 10 9 7 12 12 S 1.76394 * 129.52844 * 180.02562 * 11 10 9 13 13 C 1.75720 * 90.66903 * 179.97438 * 12 11 10 14 14 C 1.31600 * 109.62384 * 359.78021 * 13 12 11 15 15 N 1.35833 * 121.10593 * 359.97438 * 11 10 9 16 16 C 1.36066 * 119.84344 * 359.97438 * 15 11 10 17 17 O 1.22357 * 119.09636 * 179.97438 * 16 15 11 18 18 C 1.37795 * 121.80633 * 0.02562 * 16 15 11 19 19 H 0.97007 * 120.00316 * 0.02562 * 1 2 3 20 20 H 1.08004 * 120.12362 * 0.04251 * 10 9 7 21 21 H 1.07998 * 125.19026 * 179.97438 * 13 12 11 22 22 H 1.08001 * 121.63364 * 180.25212 * 14 13 12 23 23 H 1.07996 * 120.28591 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 3.7010 1.3463 0.0006 5 1 1.8823 2.3963 -1.2126 6 1 1.8822 2.3965 1.2124 7 6 2.0074 -1.2132 0.0005 8 1 3.0500 -1.2347 0.2818 9 6 1.3510 -2.4067 -0.3664 10 6 0.1992 -2.3809 -1.1812 11 6 -0.4261 -3.5688 -1.5259 12 16 -1.8606 -3.8360 -2.5171 13 6 -1.7255 -5.5720 -2.2812 14 6 -0.6796 -5.8355 -1.5273 15 7 0.0511 -4.7645 -1.0928 16 6 1.1614 -4.8060 -0.3073 17 8 1.5792 -5.8905 0.0755 18 6 1.8276 -3.6602 0.0696 19 1 -0.4851 0.8401 -0.0004 20 1 -0.1935 -1.4391 -1.5350 21 1 -2.3965 -6.3104 -2.6947 22 1 -0.4126 -6.8481 -1.2628 23 1 2.7065 -3.7217 0.6942 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261267024.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:30 Heat of formation + Delta-G solvation = 11.231706 kcal Electronic energy + Delta-G solvation = -12365.780293 eV Core-core repulsion = 10077.719247 eV Total energy + Delta-G solvation = -2288.061046 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.025 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.55847 -36.16099 -35.71065 -33.07239 -30.21658 -28.40118 -26.66688 -23.45626 -21.95909 -20.54223 -17.97251 -17.51957 -16.18539 -15.67383 -15.07500 -14.94743 -14.01777 -13.58874 -13.49503 -12.50412 -12.22154 -11.98992 -11.74626 -11.51624 -11.18995 -10.78577 -10.54214 -10.25156 -10.07722 -9.55504 -9.03131 -8.72550 -8.14691 -7.33242 -6.15786 -4.98997 1.60003 1.97223 2.39849 2.46182 2.72199 2.85006 2.91952 3.29572 3.58655 3.67190 4.29952 5.30068 5.44747 5.81126 5.89315 6.30619 6.56745 6.68084 6.79737 6.95204 7.32751 7.46112 7.63885 8.01888 8.16838 8.28451 8.46203 9.38918 9.60043 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.038484 B = 0.009950 C = 0.008075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.394160 B = 2813.286487 C = 3466.778624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.070 3.930 3 Si 0.923 3.077 4 H -0.253 1.253 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.405 4.405 8 H 0.098 0.902 9 C 0.164 3.836 10 C -0.126 4.126 11 C 0.043 3.957 12 S 0.030 5.970 13 C -0.277 4.277 14 C 0.095 3.905 15 N -0.458 5.458 16 C 0.516 3.484 17 O -0.617 6.617 18 C -0.419 4.419 19 H 0.294 0.706 20 H 0.149 0.851 21 H 0.175 0.825 22 H 0.171 0.829 23 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.880 1.494 -4.518 6.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.154 4.154 3 Si 0.745 3.255 4 H -0.176 1.176 5 H -0.190 1.190 6 H -0.193 1.193 7 C -0.433 4.433 8 H 0.116 0.884 9 C 0.156 3.844 10 C -0.161 4.161 11 C -0.171 4.171 12 S 0.285 5.715 13 C -0.415 4.415 14 C -0.034 4.034 15 N -0.164 5.164 16 C 0.335 3.665 17 O -0.510 6.510 18 C -0.443 4.443 19 H 0.105 0.895 20 H 0.166 0.834 21 H 0.192 0.808 22 H 0.188 0.812 23 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.760 1.746 -4.976 7.104 hybrid contribution 0.986 -0.168 0.712 1.228 sum -3.774 1.578 -4.263 5.908 Atomic orbital electron populations 1.69730 1.08132 1.30971 1.29359 1.26311 0.94983 1.02657 0.91410 0.85992 0.81171 0.79140 0.79182 1.17641 1.19021 1.19285 1.19971 0.98738 0.90348 1.34290 0.88448 1.17672 0.88065 0.93238 0.85432 1.21200 0.98608 0.93522 1.02803 1.23416 1.00015 0.89723 1.03989 1.84401 1.28328 1.01148 1.57667 1.24508 1.05453 0.99178 1.12315 1.20815 0.91835 0.94871 0.95888 1.43517 1.25868 1.03895 1.43083 1.16696 0.78678 0.91750 0.79415 1.90814 1.67820 1.31570 1.60801 1.20943 1.11451 0.90020 1.21909 0.89498 0.83409 0.80775 0.81203 0.86017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -16.92 10.91 55.55 0.61 -16.32 14 2 C 0.07 1.53 5.18 -17.34 -0.09 1.44 14 3 Si 0.92 16.05 29.59 -169.99 -5.03 11.02 14 4 H -0.25 -4.41 7.11 56.52 0.40 -4.01 14 5 H -0.27 -4.51 7.11 56.52 0.40 -4.11 14 6 H -0.27 -4.61 7.11 56.52 0.40 -4.21 14 7 C -0.41 -9.70 9.09 -37.82 -0.34 -10.04 14 8 H 0.10 2.23 7.91 -52.48 -0.41 1.81 14 9 C 0.16 4.18 5.59 -106.68 -0.60 3.59 14 10 C -0.13 -3.04 8.80 -38.36 -0.34 -3.37 14 11 C 0.04 0.98 7.13 -15.65 -0.11 0.87 14 12 S 0.03 0.55 23.37 -107.50 -2.51 -1.97 14 13 C -0.28 -4.58 11.15 28.87 0.32 -4.25 14 14 C 0.09 1.86 10.39 -17.22 -0.18 1.68 14 15 N -0.46 -10.88 2.81 -65.30 -0.18 -11.07 14 16 C 0.52 13.95 7.41 -15.84 -0.12 13.83 14 17 O -0.62 -17.86 17.26 4.59 0.08 -17.78 14 18 C -0.42 -11.21 9.71 -38.69 -0.38 -11.59 14 19 H 0.29 5.77 8.29 -40.82 -0.34 5.43 14 20 H 0.15 3.46 6.15 -52.48 -0.32 3.14 14 21 H 0.17 2.16 8.06 -52.49 -0.42 1.74 14 22 H 0.17 3.04 7.91 -52.49 -0.42 2.63 14 23 H 0.12 3.23 8.06 -52.49 -0.42 2.80 14 LS Contribution 226.09 15.07 3.41 3.41 Total: -1.00 -28.75 226.09 -6.60 -35.34 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -1.13 Total: 5.22 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -1.83 Total: -7.86 kcal Atomic # 7 Polarization: -27.81 SS G_CDS: 0.42 Total: -27.38 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: 0.08 Total: -17.78 kcal Atomic # 14 Polarization: 16.05 SS G_CDS: -5.03 Total: 11.02 kcal Atomic # 16 Polarization: 0.55 SS G_CDS: -2.51 Total: -1.97 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -28.75 -6.60 -35.34 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261267024.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.576 kcal (2) G-P(sol) polarization free energy of solvation -28.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds