Wall clock time and date at job start Mon Mar 30 2020 03:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47563 * 2 1 4 4 C 1.50695 * 109.47448 * 120.00368 * 2 1 3 5 5 H 1.08004 * 120.00546 * 120.27461 * 4 2 1 6 6 C 1.37885 * 119.99721 * 299.99712 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47228 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46793 * 120.00131 * 8 6 4 11 11 H 1.48500 * 109.47000 * 240.00224 * 8 6 4 12 12 C 1.50707 * 109.47019 * 240.00372 * 2 1 3 13 13 C 1.38882 * 120.74054 * 299.71844 * 12 2 1 14 14 C 1.38025 * 119.32598 * 179.75437 * 13 12 2 15 15 N 1.31971 * 120.85668 * 0.53305 * 14 13 12 16 16 C 1.32403 * 121.62112 * 359.74184 * 15 14 13 17 17 N 1.39004 * 119.70389 * 179.97438 * 16 15 14 18 18 C 1.46504 * 119.99584 * 184.97741 * 17 16 15 19 19 C 1.46498 * 120.00121 * 4.98109 * 17 16 15 20 20 C 1.38289 * 120.74855 * 119.99788 * 12 2 1 21 21 H 1.08998 * 109.46887 * 300.00064 * 1 2 3 22 22 H 1.09005 * 109.47504 * 59.99875 * 1 2 3 23 23 H 1.09002 * 109.47168 * 180.02562 * 1 2 3 24 24 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 25 25 H 1.07996 * 120.34147 * 359.97438 * 13 12 2 26 26 H 1.08000 * 119.57690 * 180.29428 * 14 13 12 27 27 H 1.08992 * 109.46965 * 90.00061 * 18 17 16 28 28 H 1.09002 * 109.46825 * 210.00147 * 18 17 16 29 29 H 1.09000 * 109.47147 * 330.00238 * 18 17 16 30 30 H 1.09002 * 109.47427 * 59.99618 * 19 17 16 31 31 H 1.09000 * 109.46780 * 179.97438 * 19 17 16 32 32 H 1.09004 * 109.46705 * 299.99457 * 19 17 16 33 33 H 1.07996 * 120.45320 * 0.02562 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6570 -1.5860 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1465 -2.2871 3.6037 10 1 3.1467 -0.1874 4.8164 11 1 1.1662 -1.5868 4.8160 12 6 2.0323 -0.7104 -1.2306 13 6 1.7110 -2.0414 -1.4628 14 6 2.1826 -2.6619 -2.6019 15 7 2.9406 -2.0099 -3.4633 16 6 3.2733 -0.7423 -3.2747 17 7 4.0744 -0.0943 -4.2078 18 6 4.5364 1.2724 -3.9530 19 6 4.4565 -0.7780 -5.4458 20 6 2.8282 -0.0532 -2.1509 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7082 1.1608 3.4845 25 1 1.0954 -2.5845 -0.7610 26 1 1.9313 -3.6955 -2.7889 27 1 5.4902 1.2412 -3.4264 28 1 4.6616 1.7962 -4.9007 29 1 3.8013 1.7966 -3.3424 30 1 3.5600 -1.0421 -6.0067 31 1 5.0800 -0.1172 -6.0481 32 1 5.0136 -1.6831 -5.2039 33 1 3.1012 0.9806 -1.9991 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261279779.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:54 Heat of formation + Delta-G solvation = 37.632157 kcal Electronic energy + Delta-G solvation = -14706.000740 eV Core-core repulsion = 12345.716483 eV Total energy + Delta-G solvation = -2360.284256 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.63784 -36.31954 -34.59436 -31.93186 -29.89219 -29.07766 -27.75393 -25.16392 -24.84325 -22.55708 -21.64622 -19.37555 -16.66652 -16.30250 -15.62025 -15.03343 -14.88527 -14.62017 -13.93050 -13.72914 -12.93745 -12.64924 -12.43667 -12.31121 -12.03226 -11.79163 -11.49421 -11.04117 -10.95184 -10.87285 -10.41119 -10.11132 -9.81279 -9.38464 -9.13362 -8.67298 -8.42276 -8.34647 -7.03973 -6.04287 -4.10798 2.03443 2.31544 3.27760 3.31421 3.35996 3.41132 4.39918 4.69009 5.03005 5.20576 5.27502 5.42318 5.50950 5.74369 5.79268 5.83456 5.89596 5.98976 6.10122 6.21089 6.49687 6.74208 6.81535 6.99727 7.14417 7.27712 7.32397 7.41792 7.69339 7.89331 7.92997 8.05958 8.35237 8.78159 8.91875 9.53872 11.01697 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.038494 B = 0.007197 C = 0.006975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.217991 B = 3889.453692 C = 4013.442537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.069 3.931 3 H 0.036 0.964 4 C -0.506 4.506 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.046 3.954 13 C -0.214 4.214 14 C 0.125 3.875 15 N -0.561 5.561 16 C 0.388 3.612 17 N -0.629 5.629 18 C 0.100 3.900 19 C 0.114 3.886 20 C -0.246 4.246 21 H 0.087 0.913 22 H 0.008 0.992 23 H 0.030 0.970 24 H 0.261 0.739 25 H 0.129 0.871 26 H 0.144 0.856 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.976 -0.892 -10.927 11.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.051 3.949 3 H 0.054 0.946 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.038 3.962 13 C -0.237 4.237 14 C -0.030 4.030 15 N -0.279 5.279 16 C 0.155 3.845 17 N -0.346 5.346 18 C -0.044 4.044 19 C -0.030 4.030 20 C -0.270 4.270 21 H 0.105 0.895 22 H 0.027 0.973 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.147 0.853 26 H 0.161 0.839 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.299 -1.126 -11.646 12.465 hybrid contribution 0.070 -0.012 1.634 1.636 sum 4.368 -1.138 -10.012 10.982 Atomic orbital electron populations 1.21761 0.97220 0.99517 1.00329 1.17939 0.93121 0.95469 0.88364 0.94617 1.21103 1.31078 1.12549 0.89659 0.92305 1.24956 0.95030 0.94977 0.98974 1.69894 1.36690 1.22896 1.23385 0.86502 0.78678 0.79752 0.82925 1.19715 1.21012 1.20929 1.20845 0.88429 0.93188 0.93757 1.21764 1.06121 0.96267 0.99536 1.22208 0.92368 0.98493 0.89953 1.67021 1.19462 1.07713 1.33727 1.18242 0.89589 0.88792 0.87852 1.46003 1.54652 1.14526 1.19429 1.21636 0.99520 0.81954 1.01281 1.21337 0.99485 0.96850 0.85282 1.21384 1.07234 1.01423 0.96936 0.89483 0.97260 0.95036 0.92951 0.85344 0.83910 0.93531 0.91765 0.90946 0.93253 0.92057 0.92996 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.79 37.15 0.33 -2.81 16 2 C 0.07 1.74 2.50 -92.93 -0.23 1.51 16 3 H 0.04 0.95 7.94 -51.93 -0.41 0.54 16 4 C -0.51 -13.73 8.26 -34.44 -0.28 -14.02 16 5 H 0.06 1.61 7.62 -52.48 -0.40 1.21 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.99 11.32 55.43 0.63 -24.36 16 8 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 12 C 0.05 1.02 4.74 -104.36 -0.50 0.52 16 13 C -0.21 -4.40 8.86 -39.42 -0.35 -4.75 16 14 C 0.12 2.31 11.17 -17.57 -0.20 2.11 16 15 N -0.56 -10.83 9.57 -12.43 -0.12 -10.95 16 16 C 0.39 7.40 7.37 -155.01 -1.14 6.26 16 17 N -0.63 -9.79 3.39 -189.66 -0.64 -10.43 16 18 C 0.10 1.23 10.25 59.85 0.61 1.84 16 19 C 0.11 1.45 10.19 59.85 0.61 2.06 16 20 C -0.25 -5.01 8.92 -39.23 -0.35 -5.36 16 21 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 22 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 23 H 0.03 0.72 7.49 -51.93 -0.39 0.33 16 24 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.13 2.59 7.68 -52.49 -0.40 2.19 16 26 H 0.14 2.15 8.06 -52.49 -0.42 1.72 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.61 7.92 -51.93 -0.41 0.20 16 29 H 0.07 0.92 5.98 -51.93 -0.31 0.61 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.59 7.79 -51.93 -0.40 0.18 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.12 2.35 5.97 -52.49 -0.31 2.04 16 LS Contribution 274.90 15.07 4.14 4.14 Total: -1.00 -29.86 274.90 -7.22 -37.08 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -4.61 Total: -0.54 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -1.59 Total: -11.04 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.13 Total: -45.74 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.86 -7.22 -37.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279779.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.708 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds