Wall clock time and date at job start Mon Mar 30 2020 03:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47563 * 2 1 4 4 C 1.50695 * 109.47448 * 120.00368 * 2 1 3 5 5 H 1.08004 * 120.00546 * 120.27461 * 4 2 1 6 6 C 1.37885 * 119.99721 * 299.99712 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47228 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46793 * 120.00131 * 8 6 4 11 11 H 1.48500 * 109.47000 * 240.00224 * 8 6 4 12 12 C 1.50707 * 109.47019 * 240.00372 * 2 1 3 13 13 C 1.38882 * 120.74054 * 299.71844 * 12 2 1 14 14 C 1.38025 * 119.32598 * 179.75437 * 13 12 2 15 15 N 1.31971 * 120.85668 * 0.53305 * 14 13 12 16 16 C 1.32403 * 121.62112 * 359.74184 * 15 14 13 17 17 N 1.39004 * 119.70389 * 179.97438 * 16 15 14 18 18 C 1.46504 * 119.99584 * 184.97741 * 17 16 15 19 19 C 1.46498 * 120.00121 * 4.98109 * 17 16 15 20 20 C 1.38289 * 120.74855 * 119.99788 * 12 2 1 21 21 H 1.08998 * 109.46887 * 300.00064 * 1 2 3 22 22 H 1.09005 * 109.47504 * 59.99875 * 1 2 3 23 23 H 1.09002 * 109.47168 * 180.02562 * 1 2 3 24 24 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 25 25 H 1.07996 * 120.34147 * 359.97438 * 13 12 2 26 26 H 1.08000 * 119.57690 * 180.29428 * 14 13 12 27 27 H 1.08992 * 109.46965 * 90.00061 * 18 17 16 28 28 H 1.09002 * 109.46825 * 210.00147 * 18 17 16 29 29 H 1.09000 * 109.47147 * 330.00238 * 18 17 16 30 30 H 1.09002 * 109.47427 * 59.99618 * 19 17 16 31 31 H 1.09000 * 109.46780 * 179.97438 * 19 17 16 32 32 H 1.09004 * 109.46705 * 299.99457 * 19 17 16 33 33 H 1.07996 * 120.45320 * 0.02562 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6570 -1.5860 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1465 -2.2871 3.6037 10 1 3.1467 -0.1874 4.8164 11 1 1.1662 -1.5868 4.8160 12 6 2.0323 -0.7104 -1.2306 13 6 1.7110 -2.0414 -1.4628 14 6 2.1826 -2.6619 -2.6019 15 7 2.9406 -2.0099 -3.4633 16 6 3.2733 -0.7423 -3.2747 17 7 4.0744 -0.0943 -4.2078 18 6 4.5364 1.2724 -3.9530 19 6 4.4565 -0.7780 -5.4458 20 6 2.8282 -0.0532 -2.1509 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7082 1.1608 3.4845 25 1 1.0954 -2.5845 -0.7610 26 1 1.9313 -3.6955 -2.7889 27 1 5.4902 1.2412 -3.4264 28 1 4.6616 1.7962 -4.9007 29 1 3.8013 1.7966 -3.3424 30 1 3.5600 -1.0421 -6.0067 31 1 5.0800 -0.1172 -6.0481 32 1 5.0136 -1.6831 -5.2039 33 1 3.1012 0.9806 -1.9991 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261279779.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:54 Heat of formation + Delta-G solvation = 21.055559 kcal Electronic energy + Delta-G solvation = -14706.719555 eV Core-core repulsion = 12345.716483 eV Total energy + Delta-G solvation = -2361.003072 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.12297 -37.69805 -36.34495 -33.81972 -31.36650 -30.74092 -28.88783 -27.23398 -26.14987 -24.21733 -23.15374 -21.00183 -18.46379 -17.88469 -17.20506 -16.52888 -16.44054 -16.11633 -15.42081 -15.05689 -14.64552 -14.19515 -14.06168 -13.48452 -13.41676 -13.04880 -12.99767 -12.84605 -12.81455 -12.46861 -12.27037 -12.05506 -11.69578 -11.12958 -10.70829 -10.49985 -10.21265 -10.08470 -8.37440 -8.11988 -6.25641 0.51890 0.72665 1.40573 1.43012 1.54463 2.12597 2.42883 3.12618 3.19080 3.74471 4.09633 4.25305 4.37719 4.48671 4.53625 4.56167 4.63059 4.83302 4.87463 4.90195 4.96556 4.99256 5.05436 5.21948 5.29678 5.48582 5.65357 5.79792 6.01192 6.05150 6.16124 6.32091 6.51738 6.81988 7.31364 7.42157 8.93324 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.038494 B = 0.007197 C = 0.006975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.217991 B = 3889.453692 C = 4013.442537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.071 3.929 3 H 0.007 0.993 4 C -0.520 4.520 5 H 0.050 0.950 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.956 3.044 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.276 1.276 12 C 0.024 3.976 13 C -0.232 4.232 14 C 0.137 3.863 15 N -0.567 5.567 16 C 0.386 3.614 17 N -0.629 5.629 18 C 0.093 3.907 19 C 0.111 3.889 20 C -0.261 4.261 21 H 0.062 0.938 22 H 0.023 0.977 23 H 0.035 0.965 24 H 0.263 0.737 25 H 0.126 0.874 26 H 0.181 0.819 27 H 0.053 0.947 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.098 0.902 32 H 0.045 0.955 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.948 -1.591 -12.143 13.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.052 3.948 3 H 0.025 0.975 4 C -0.558 4.558 5 H 0.069 0.931 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.781 3.219 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.202 1.202 12 C 0.016 3.984 13 C -0.255 4.255 14 C -0.018 4.018 15 N -0.286 5.286 16 C 0.152 3.848 17 N -0.344 5.344 18 C -0.050 4.050 19 C -0.031 4.031 20 C -0.285 4.285 21 H 0.081 0.919 22 H 0.042 0.958 23 H 0.054 0.946 24 H 0.072 0.928 25 H 0.144 0.856 26 H 0.198 0.802 27 H 0.071 0.929 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.063 0.937 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.294 -1.801 -12.893 14.054 hybrid contribution -0.182 0.242 1.902 1.926 sum 5.112 -1.560 -10.991 12.222 Atomic orbital electron populations 1.21595 0.96814 0.99560 0.99760 1.17783 0.93528 0.94015 0.89449 0.97487 1.21321 1.31121 1.12470 0.90926 0.93144 1.25698 0.95195 0.95657 1.01721 1.70009 1.37453 1.23955 1.24097 0.85535 0.78260 0.78650 0.79413 1.19479 1.20601 1.20208 1.20666 0.90065 0.94201 0.93435 1.21773 1.07253 0.95717 1.00721 1.22720 0.90729 0.99804 0.88586 1.67189 1.19798 1.07785 1.33818 1.18472 0.89492 0.88821 0.88043 1.46384 1.53232 1.15486 1.19344 1.21864 0.99267 0.80602 1.03260 1.21515 0.99874 0.97420 0.84338 1.21431 1.07671 1.01842 0.97557 0.91883 0.95813 0.94568 0.92778 0.85639 0.80225 0.92883 0.88181 0.91948 0.93532 0.88315 0.93651 0.85510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.86 8.79 71.98 0.63 -5.23 16 2 C 0.07 3.64 2.50 -12.29 -0.03 3.61 16 3 H 0.01 0.39 7.94 -2.39 -0.02 0.37 16 4 C -0.52 -28.81 8.26 25.60 0.21 -28.60 16 5 H 0.05 2.81 7.62 -2.91 -0.02 2.79 16 6 C 0.02 0.89 5.30 84.66 0.45 1.34 16 7 N -0.92 -52.33 11.32 21.45 0.24 -52.09 16 8 Si 0.96 43.55 29.54 68.60 2.03 45.57 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 12 C 0.02 1.08 4.74 -19.70 -0.09 0.99 16 13 C -0.23 -9.45 8.86 22.37 0.20 -9.25 16 14 C 0.14 4.83 11.17 84.62 0.95 5.78 16 15 N -0.57 -20.86 9.57 -193.25 -1.85 -22.71 16 16 C 0.39 14.24 7.37 133.06 0.98 15.22 16 17 N -0.63 -18.14 3.39 -753.96 -2.56 -20.70 16 18 C 0.09 2.06 10.25 127.77 1.31 3.37 16 19 C 0.11 2.49 10.19 127.77 1.30 3.79 16 20 C -0.26 -10.65 8.92 22.50 0.20 -10.45 16 21 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16 22 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 23 H 0.04 1.68 7.49 -2.39 -0.02 1.66 16 24 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 25 H 0.13 5.07 7.68 -2.91 -0.02 5.05 16 26 H 0.18 4.86 8.06 -2.91 -0.02 4.84 16 27 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.10 1.51 7.92 -2.39 -0.02 1.50 16 29 H 0.06 1.52 5.98 -2.39 -0.01 1.51 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.10 1.47 7.79 -2.39 -0.02 1.45 16 32 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.13 4.93 5.97 -2.91 -0.02 4.91 16 Total: -1.00 -64.01 274.90 5.05 -58.96 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 1.08 Total: 10.41 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: 6.11 Total: -19.44 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -4.16 Total: -95.50 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -64.01 5.05 -58.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279779.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.016 kcal (2) G-P(sol) polarization free energy of solvation -64.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds