Wall clock time and date at job start Mon Mar 30 2020 03:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46956 * 111.00070 * 2 1 4 4 C 1.53364 * 109.73285 * 164.60377 * 3 2 1 5 5 N 1.46802 * 108.21338 * 50.21268 * 4 3 2 6 6 C 1.35729 * 128.03155 * 163.41104 * 5 4 3 7 7 C 1.50704 * 125.91424 * 0.17776 * 6 5 4 8 8 C 1.50695 * 109.47212 * 264.99743 * 7 6 5 9 9 H 1.07998 * 120.00269 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99996 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00082 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99858 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47094 * 90.00165 * 12 10 8 14 14 H 1.48501 * 109.46947 * 210.00071 * 12 10 8 15 15 H 1.48501 * 109.47376 * 330.00222 * 12 10 8 16 16 C 1.35066 * 108.16505 * 180.21659 * 6 5 4 17 17 C 1.41103 * 107.48531 * 359.93282 * 16 6 5 18 18 C 1.34119 * 107.32527 * 359.96189 * 17 16 6 19 19 C 1.47389 * 110.95883 * 235.90090 * 2 1 3 20 20 H 1.08999 * 109.47333 * 59.99880 * 1 2 3 21 21 H 1.08999 * 109.47221 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47213 * 299.99814 * 1 2 3 23 23 H 1.09002 * 109.42025 * 44.53679 * 3 2 1 24 24 H 1.08998 * 109.41292 * 284.66483 * 3 2 1 25 25 H 1.09005 * 109.71106 * 169.89264 * 4 3 2 26 26 H 1.09002 * 109.71370 * 290.49002 * 4 3 2 27 27 H 1.09000 * 109.47267 * 25.00105 * 7 6 5 28 28 H 1.09005 * 109.46479 * 145.00030 * 7 6 5 29 29 H 0.96993 * 119.99947 * 179.97438 * 11 10 8 30 30 H 1.07997 * 126.25249 * 179.90275 * 16 6 5 31 31 H 1.08004 * 126.33472 * 179.97438 * 17 16 6 32 32 H 1.08998 * 109.82223 * 54.63982 * 19 2 1 33 33 H 1.08993 * 109.76765 * 293.89323 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.4805 1.3566 0.3833 5 7 4.1605 0.3617 -0.4552 6 6 5.4923 0.2276 -0.6800 7 6 6.5790 1.0937 -0.0966 8 6 6.9271 2.1882 -1.0722 9 1 6.4126 2.2508 -2.0197 10 6 7.9024 3.1098 -0.7551 11 7 8.5292 3.0333 0.3986 12 14 8.3333 4.4670 -1.9641 13 1 7.4781 5.6525 -1.7029 14 1 9.7611 4.8409 -1.8002 15 1 8.1034 3.9865 -3.3503 16 6 5.6749 -0.8159 -1.5178 17 6 4.4022 -1.3457 -1.8189 18 6 3.4968 -0.6104 -1.1568 19 6 1.9962 -0.7716 -1.1397 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.4414 1.9729 0.7210 24 1 1.8825 1.8034 -0.9945 25 1 3.9149 2.3414 0.2110 26 1 3.5863 1.0868 1.4341 27 1 6.2295 1.5360 0.8363 28 1 7.4626 0.4859 0.0981 29 1 9.2155 3.6814 0.6214 30 1 6.6219 -1.1783 -1.8897 31 1 4.1955 -2.1876 -2.4631 32 1 1.5742 -0.3917 -2.0701 33 1 1.7401 -1.8245 -1.0221 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261282029.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:32 Heat of formation + Delta-G solvation = 50.227609 kcal Electronic energy + Delta-G solvation = -14902.341842 eV Core-core repulsion = 12542.603765 eV Total energy + Delta-G solvation = -2359.738077 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.80326 -37.22320 -33.27019 -32.69651 -30.62325 -28.42508 -28.01940 -25.21454 -23.95054 -22.52423 -21.18582 -19.38868 -17.81886 -16.43232 -16.03627 -15.36889 -14.88603 -14.71925 -14.35016 -13.73088 -13.23609 -12.81496 -12.48570 -12.33376 -12.13126 -11.74915 -11.56591 -11.30974 -11.11605 -10.98964 -10.94203 -10.66741 -10.45245 -9.68678 -9.39027 -8.48925 -8.43730 -7.75853 -6.92349 -6.03332 -4.08432 3.07048 3.29145 3.35984 3.41157 3.55260 3.87047 4.02846 4.45116 4.86459 5.00917 5.08951 5.26157 5.29871 5.40599 5.53259 5.59577 5.71038 5.71729 5.87952 6.03782 6.26151 6.31896 6.49479 6.84780 6.88695 7.06276 7.21462 7.45154 7.52584 7.91212 7.97507 8.18494 8.25038 8.42022 8.96639 9.55628 11.04899 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.038511 B = 0.007517 C = 0.006942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.885339 B = 3724.118349 C = 4032.409775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.044 3.956 4 C 0.115 3.885 5 N -0.439 5.439 6 C 0.088 3.912 7 C 0.077 3.923 8 C -0.510 4.510 9 H 0.057 0.943 10 C 0.058 3.942 11 N -0.895 5.895 12 Si 0.895 3.105 13 H -0.281 1.281 14 H -0.285 1.285 15 H -0.273 1.273 16 C -0.231 4.231 17 C -0.186 4.186 18 C -0.027 4.027 19 C 0.134 3.866 20 H 0.025 0.975 21 H 0.070 0.930 22 H 0.069 0.931 23 H 0.090 0.910 24 H 0.044 0.956 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.022 0.978 28 H 0.041 0.959 29 H 0.262 0.738 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.043 0.957 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.940 -4.277 -0.772 14.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.270 5.270 3 C -0.084 4.084 4 C -0.007 4.007 5 N -0.117 5.117 6 C -0.025 4.025 7 C 0.039 3.961 8 C -0.549 4.549 9 H 0.075 0.925 10 C -0.143 4.143 11 N -0.534 5.534 12 Si 0.722 3.278 13 H -0.207 1.207 14 H -0.211 1.211 15 H -0.198 1.198 16 C -0.255 4.255 17 C -0.212 4.212 18 C -0.136 4.136 19 C 0.006 3.994 20 H 0.044 0.956 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.108 0.892 24 H 0.062 0.938 25 H 0.114 0.886 26 H 0.097 0.903 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.061 0.939 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.809 -4.150 -0.009 14.419 hybrid contribution 0.057 1.179 -1.372 1.810 sum -13.751 -2.971 -1.381 14.136 Atomic orbital electron populations 1.22364 0.86968 1.02213 1.00643 1.62129 1.07774 1.13600 1.43514 1.22398 0.95086 0.89776 1.01179 1.21883 0.90635 0.93120 0.95088 1.43961 1.05908 1.24581 1.37216 1.21279 0.83100 0.98211 0.99925 1.17905 0.89869 0.92730 0.95548 1.21079 1.20091 1.10905 1.02792 0.92486 1.25002 0.95980 0.97909 0.95402 1.69953 1.25206 1.36481 1.21751 0.86541 0.77616 0.81972 0.81622 1.20727 1.21086 1.19770 1.20566 0.97001 1.01281 1.06619 1.20215 0.92681 1.02644 1.05649 1.19905 0.92716 0.96693 1.04297 1.20690 0.89178 0.98606 0.90893 0.95621 0.91162 0.91246 0.89206 0.93799 0.88575 0.90265 0.95927 0.94081 0.92821 0.85464 0.85932 0.93921 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.54 60.06 0.57 0.84 16 2 N -0.55 -7.51 4.92 -243.52 -1.20 -8.70 16 3 C 0.04 0.61 5.54 -3.61 -0.02 0.59 16 4 C 0.11 2.00 6.77 -3.69 -0.02 1.98 16 5 N -0.44 -9.13 3.16 -107.57 -0.34 -9.47 16 6 C 0.09 2.08 6.12 -81.99 -0.50 1.58 16 7 C 0.08 2.05 5.30 -29.04 -0.15 1.89 16 8 C -0.51 -14.48 9.09 -34.44 -0.31 -14.80 16 9 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 11 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 12 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 16 C -0.23 -5.17 10.78 -39.62 -0.43 -5.60 16 17 C -0.19 -3.64 10.81 -39.95 -0.43 -4.08 16 18 C -0.03 -0.51 6.64 -81.60 -0.54 -1.05 16 19 C 0.13 1.96 5.86 -4.59 -0.03 1.94 16 20 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 21 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 23 H 0.09 1.01 7.96 -51.93 -0.41 0.59 16 24 H 0.04 0.63 8.06 -51.93 -0.42 0.21 16 25 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 26 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.02 0.61 7.86 -51.93 -0.41 0.21 16 28 H 0.04 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 30 H 0.13 2.74 8.06 -52.49 -0.42 2.32 16 31 H 0.12 2.04 8.06 -52.48 -0.42 1.61 16 32 H 0.04 0.59 8.13 -51.93 -0.42 0.17 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 275.24 15.07 4.15 4.15 Total: -1.00 -31.22 275.24 -8.64 -39.86 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -5.01 Total: -1.63 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -1.97 Total: -15.15 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: -0.80 Total: -43.84 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.22 -8.64 -39.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261282029.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.088 kcal (2) G-P(sol) polarization free energy of solvation -31.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds