Wall clock time and date at job start Mon Mar 30 2020 03:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46956 * 111.00070 * 2 1 4 4 C 1.53364 * 109.73285 * 164.60377 * 3 2 1 5 5 N 1.46802 * 108.21338 * 50.21268 * 4 3 2 6 6 C 1.35729 * 128.03155 * 163.41104 * 5 4 3 7 7 C 1.50704 * 125.91424 * 0.17776 * 6 5 4 8 8 C 1.50695 * 109.47212 * 264.99743 * 7 6 5 9 9 H 1.07998 * 120.00269 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99996 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00082 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99858 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47094 * 90.00165 * 12 10 8 14 14 H 1.48501 * 109.46947 * 210.00071 * 12 10 8 15 15 H 1.48501 * 109.47376 * 330.00222 * 12 10 8 16 16 C 1.35066 * 108.16505 * 180.21659 * 6 5 4 17 17 C 1.41103 * 107.48531 * 359.93282 * 16 6 5 18 18 C 1.34119 * 107.32527 * 359.96189 * 17 16 6 19 19 C 1.47389 * 110.95883 * 235.90090 * 2 1 3 20 20 H 1.08999 * 109.47333 * 59.99880 * 1 2 3 21 21 H 1.08999 * 109.47221 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47213 * 299.99814 * 1 2 3 23 23 H 1.09002 * 109.42025 * 44.53679 * 3 2 1 24 24 H 1.08998 * 109.41292 * 284.66483 * 3 2 1 25 25 H 1.09005 * 109.71106 * 169.89264 * 4 3 2 26 26 H 1.09002 * 109.71370 * 290.49002 * 4 3 2 27 27 H 1.09000 * 109.47267 * 25.00105 * 7 6 5 28 28 H 1.09005 * 109.46479 * 145.00030 * 7 6 5 29 29 H 0.96993 * 119.99947 * 179.97438 * 11 10 8 30 30 H 1.07997 * 126.25249 * 179.90275 * 16 6 5 31 31 H 1.08004 * 126.33472 * 179.97438 * 17 16 6 32 32 H 1.08998 * 109.82223 * 54.63982 * 19 2 1 33 33 H 1.08993 * 109.76765 * 293.89323 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.4805 1.3566 0.3833 5 7 4.1605 0.3617 -0.4552 6 6 5.4923 0.2276 -0.6800 7 6 6.5790 1.0937 -0.0966 8 6 6.9271 2.1882 -1.0722 9 1 6.4126 2.2508 -2.0197 10 6 7.9024 3.1098 -0.7551 11 7 8.5292 3.0333 0.3986 12 14 8.3333 4.4670 -1.9641 13 1 7.4781 5.6525 -1.7029 14 1 9.7611 4.8409 -1.8002 15 1 8.1034 3.9865 -3.3503 16 6 5.6749 -0.8159 -1.5178 17 6 4.4022 -1.3457 -1.8189 18 6 3.4968 -0.6104 -1.1568 19 6 1.9962 -0.7716 -1.1397 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.4414 1.9729 0.7210 24 1 1.8825 1.8034 -0.9945 25 1 3.9149 2.3414 0.2110 26 1 3.5863 1.0868 1.4341 27 1 6.2295 1.5360 0.8363 28 1 7.4626 0.4859 0.0981 29 1 9.2155 3.6814 0.6214 30 1 6.6219 -1.1783 -1.8897 31 1 4.1955 -2.1876 -2.4631 32 1 1.5742 -0.3917 -2.0701 33 1 1.7401 -1.8245 -1.0221 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261282029.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:32 Heat of formation + Delta-G solvation = 30.268341 kcal Electronic energy + Delta-G solvation = -14903.207341 eV Core-core repulsion = 12542.603765 eV Total energy + Delta-G solvation = -2360.603575 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.34223 -38.37981 -35.39146 -34.10423 -32.39200 -29.95909 -29.39321 -26.76972 -25.35747 -24.28234 -22.47599 -21.01054 -19.27261 -18.56639 -17.57590 -16.73691 -16.41864 -15.97103 -15.73901 -15.12637 -14.73566 -14.35666 -14.24809 -13.73413 -13.41753 -13.27669 -13.14131 -12.87074 -12.67999 -12.53971 -12.37787 -12.26893 -12.14129 -11.69192 -11.53134 -10.64401 -9.53313 -9.32951 -8.64127 -8.17642 -6.37049 1.36068 1.38632 1.47376 1.53198 2.13351 2.19410 2.41424 2.88661 3.07254 3.67466 3.83710 3.99572 4.14565 4.41210 4.43612 4.57233 4.59310 4.64147 4.69512 4.77245 4.82781 4.84983 5.04353 5.15288 5.25770 5.47365 5.60607 5.69475 5.88022 5.98696 6.09342 6.35169 6.56744 6.67988 6.73957 7.32074 8.86012 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.038511 B = 0.007517 C = 0.006942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.885339 B = 3724.118349 C = 4032.409775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.560 5.560 3 C 0.054 3.946 4 C 0.106 3.894 5 N -0.446 5.446 6 C 0.045 3.955 7 C 0.091 3.909 8 C -0.528 4.528 9 H 0.048 0.952 10 C 0.009 3.991 11 N -0.928 5.928 12 Si 0.966 3.034 13 H -0.269 1.269 14 H -0.277 1.277 15 H -0.270 1.270 16 C -0.242 4.242 17 C -0.199 4.199 18 C -0.014 4.014 19 C 0.136 3.864 20 H 0.035 0.965 21 H 0.084 0.916 22 H 0.082 0.918 23 H 0.121 0.879 24 H 0.041 0.959 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.003 0.997 28 H 0.012 0.988 29 H 0.267 0.733 30 H 0.122 0.878 31 H 0.155 0.845 32 H 0.059 0.941 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.359 -4.163 -1.700 16.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.285 5.285 3 C -0.074 4.074 4 C -0.015 4.015 5 N -0.123 5.123 6 C -0.068 4.068 7 C 0.054 3.946 8 C -0.566 4.566 9 H 0.066 0.934 10 C -0.190 4.190 11 N -0.567 5.567 12 Si 0.790 3.210 13 H -0.194 1.194 14 H -0.202 1.202 15 H -0.194 1.194 16 C -0.266 4.266 17 C -0.224 4.224 18 C -0.125 4.125 19 C 0.008 3.992 20 H 0.053 0.947 21 H 0.103 0.897 22 H 0.101 0.899 23 H 0.139 0.861 24 H 0.059 0.941 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.021 0.979 28 H 0.030 0.970 29 H 0.076 0.924 30 H 0.140 0.860 31 H 0.172 0.828 32 H 0.077 0.923 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -16.249 -4.039 -0.927 16.769 hybrid contribution 0.773 1.087 -1.041 1.692 sum -15.476 -2.951 -1.968 15.878 Atomic orbital electron populations 1.22457 0.84167 1.03589 1.01774 1.62118 1.10207 1.13023 1.43130 1.22347 0.92491 0.90755 1.01834 1.22092 0.93074 0.91557 0.94820 1.44172 1.05062 1.25499 1.37538 1.20866 0.84201 0.99427 1.02348 1.17535 0.90025 0.92395 0.94681 1.21278 1.20596 1.11940 1.02767 0.93367 1.25890 0.95543 1.00298 0.97246 1.70067 1.25639 1.37537 1.23505 0.85432 0.77740 0.78813 0.78993 1.19422 1.20178 1.19417 1.20781 0.98388 1.01159 1.06310 1.20539 0.91294 1.03926 1.06664 1.20737 0.95145 0.94732 1.01846 1.20840 0.85808 1.00355 0.92162 0.94655 0.89737 0.89896 0.86105 0.94102 0.90367 0.90263 0.97902 0.97022 0.92382 0.85958 0.82761 0.92277 0.87030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.54 127.69 1.22 1.64 16 2 N -0.56 -13.48 4.92 -924.37 -4.54 -18.03 16 3 C 0.05 1.38 5.54 86.41 0.48 1.86 16 4 C 0.11 3.71 6.77 86.44 0.59 4.30 16 5 N -0.45 -18.66 3.16 -494.24 -1.56 -20.22 16 6 C 0.04 2.20 6.12 41.23 0.25 2.45 16 7 C 0.09 5.15 5.30 29.10 0.15 5.30 16 8 C -0.53 -31.10 9.09 25.60 0.23 -30.87 16 9 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 10 C 0.01 0.51 5.46 84.66 0.46 0.97 16 11 N -0.93 -56.18 13.29 21.45 0.28 -55.89 16 12 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 13 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 14 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 15 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 16 C -0.24 -11.09 10.78 22.24 0.24 -10.85 16 17 C -0.20 -7.58 10.81 22.03 0.24 -7.34 16 18 C -0.01 -0.52 6.64 40.88 0.27 -0.25 16 19 C 0.14 3.51 5.86 85.54 0.50 4.01 16 20 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 21 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.08 1.10 8.09 -2.38 -0.02 1.08 16 23 H 0.12 2.32 7.96 -2.39 -0.02 2.30 16 24 H 0.04 1.07 8.06 -2.39 -0.02 1.05 16 25 H 0.08 2.96 8.14 -2.38 -0.02 2.94 16 26 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 27 H 0.00 0.16 7.86 -2.39 -0.02 0.14 16 28 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 30 H 0.12 5.51 8.06 -2.91 -0.02 5.48 16 31 H 0.15 4.73 8.06 -2.91 -0.02 4.71 16 32 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 33 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -68.90 275.24 1.91 -66.99 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 1.07 Total: 9.13 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: 4.63 Total: -28.79 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: -5.82 Total: -94.14 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -68.90 1.91 -66.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261282029.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.261 kcal (2) G-P(sol) polarization free energy of solvation -68.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds