Wall clock time and date at job start Mon Mar 30 2020 03:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46923 * 2 1 4 4 C 1.50706 * 109.46956 * 240.00576 * 2 1 3 5 5 H 1.08001 * 119.99546 * 239.99975 * 4 2 1 6 6 C 1.37872 * 120.00247 * 59.99755 * 4 2 1 7 7 N 1.31518 * 120.00061 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00030 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47635 * 89.99762 * 8 6 4 10 10 H 1.48500 * 109.47109 * 209.99854 * 8 6 4 11 11 H 1.48503 * 109.47129 * 329.99647 * 8 6 4 12 12 C 1.50697 * 109.47420 * 120.00031 * 2 1 3 13 13 N 1.30785 * 125.72188 * 59.95152 * 12 2 1 14 14 C 1.34426 * 109.32466 * 180.02562 * 13 12 2 15 15 C 1.33861 * 107.79478 * 359.97438 * 14 13 12 16 16 N 1.34404 * 125.72663 * 239.99971 * 12 2 1 17 17 C 1.46476 * 128.44050 * 0.08275 * 16 12 2 18 18 C 1.53286 * 108.69589 * 162.69879 * 17 16 12 19 19 C 1.53131 * 109.70800 * 50.74971 * 18 17 16 20 20 C 1.50704 * 128.68200 * 180.12465 * 15 14 13 21 21 H 1.09002 * 109.47046 * 299.99584 * 1 2 3 22 22 H 1.08999 * 109.47470 * 60.00041 * 1 2 3 23 23 H 1.09003 * 109.46923 * 180.02562 * 1 2 3 24 24 H 0.96995 * 120.00186 * 179.97438 * 7 6 4 25 25 H 1.07993 * 126.10359 * 180.02562 * 14 13 12 26 26 H 1.08997 * 109.59690 * 282.45668 * 17 16 12 27 27 H 1.08994 * 109.60461 * 42.93227 * 17 16 12 28 28 H 1.08994 * 109.43143 * 170.81927 * 18 17 16 29 29 H 1.09005 * 109.42556 * 290.67550 * 18 17 16 30 30 H 1.08992 * 109.49726 * 170.14288 * 19 18 17 31 31 H 1.08997 * 109.50295 * 50.03373 * 19 18 17 32 32 H 1.09001 * 109.75076 * 283.80321 * 20 15 14 33 33 H 1.09003 * 109.74669 * 44.52144 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3428 -2.1615 -4.4120 10 1 2.4864 -0.1411 -5.1123 11 1 3.6293 -1.7581 -3.7124 12 6 2.0324 -0.7104 1.2304 13 7 1.7857 -1.9549 1.5478 14 6 2.3943 -2.2465 2.7104 15 6 3.0372 -1.1471 3.1227 16 7 2.8084 -0.1711 2.1861 17 6 3.3381 1.1921 2.2675 18 6 3.7872 1.4596 3.7084 19 6 4.7003 0.3260 4.1837 20 6 3.8696 -0.9524 4.3637 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7086 1.1614 -3.4843 25 1 2.3698 -3.1982 3.2203 26 1 4.1893 1.2943 1.5943 27 1 2.5610 1.9037 1.9886 28 1 4.3300 2.4039 3.7497 29 1 2.9123 1.5164 4.3562 30 1 5.1562 0.6005 5.1348 31 1 5.4804 0.1521 3.4425 32 1 3.2183 -0.8494 5.2317 33 1 4.5332 -1.8064 4.4998 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261287397.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:18 Heat of formation + Delta-G solvation = 40.137116 kcal Electronic energy + Delta-G solvation = -15128.326401 eV Core-core repulsion = 12768.150768 eV Total energy + Delta-G solvation = -2360.175633 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.56172 -36.31766 -34.25037 -32.43476 -30.70638 -29.55947 -26.67442 -25.09929 -23.86537 -22.10648 -21.44529 -19.33964 -18.30791 -16.25019 -15.99033 -15.34327 -14.51701 -14.08905 -13.88788 -13.68074 -13.49758 -12.91252 -12.65002 -12.26710 -11.78344 -11.36413 -11.01353 -10.93220 -10.89241 -10.79994 -10.70256 -10.37962 -10.10992 -9.78242 -9.06957 -8.87911 -8.72355 -8.36914 -7.32108 -6.00421 -4.04712 2.83682 3.34388 3.40180 3.44237 3.52084 4.07810 4.48288 4.68892 4.78833 4.84419 5.16918 5.31008 5.47251 5.54072 5.65922 5.67779 5.73430 5.88053 5.88772 5.94228 6.18202 6.22310 6.42857 6.86320 7.00262 7.16350 7.24492 7.50750 7.65196 7.88694 8.00636 8.16822 8.38513 8.96863 9.13618 9.58836 11.05992 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.038825 B = 0.008150 C = 0.007900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.008259 B = 3434.778995 C = 3543.273727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.120 3.880 3 H 0.036 0.964 4 C -0.494 4.494 5 H 0.060 0.940 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.269 3.731 13 N -0.499 5.499 14 C -0.029 4.029 15 C -0.067 4.067 16 N -0.461 5.461 17 C 0.107 3.893 18 C -0.130 4.130 19 C -0.123 4.123 20 C -0.036 4.036 21 H 0.004 0.996 22 H 0.089 0.911 23 H 0.040 0.960 24 H 0.261 0.739 25 H 0.156 0.844 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.858 2.075 12.082 13.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.100 3.900 3 H 0.054 0.946 4 C -0.534 4.534 5 H 0.079 0.921 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.007 3.993 13 N -0.216 5.216 14 C -0.177 4.177 15 C -0.180 4.180 16 N -0.144 5.144 17 C -0.016 4.016 18 C -0.168 4.168 19 C -0.161 4.161 20 C -0.074 4.074 21 H 0.023 0.977 22 H 0.107 0.893 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.173 0.827 26 H 0.098 0.902 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.359 1.784 11.486 12.800 hybrid contribution 0.824 0.068 -0.351 0.898 sum 6.183 1.852 11.135 12.871 Atomic orbital electron populations 1.21713 0.96482 1.00397 0.99941 1.17400 0.93414 0.93873 0.85344 0.94600 1.20979 1.31000 1.12164 0.89212 0.92149 1.24920 0.95133 0.95053 0.98945 1.69876 1.36947 1.23032 1.23529 0.86480 0.79332 0.79336 0.82215 1.20493 1.21293 1.19976 1.24415 0.92465 0.89879 0.92591 1.70533 1.25064 1.12667 1.13364 1.21750 1.02064 0.97850 0.96064 1.20800 1.09521 0.91256 0.96435 1.45391 1.39763 1.10395 1.18886 1.21809 0.99956 0.82119 0.97758 1.21852 1.00351 0.99264 0.95356 1.21636 0.98077 0.94836 1.01514 1.20047 0.96313 0.97887 0.93188 0.97664 0.89262 0.94082 0.92904 0.82703 0.90154 0.89297 0.90107 0.91160 0.91243 0.91544 0.91082 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.95 37.16 0.33 -2.90 16 2 C 0.12 3.12 2.68 -92.92 -0.25 2.88 16 3 H 0.04 0.95 7.28 -51.93 -0.38 0.57 16 4 C -0.49 -14.10 8.55 -34.44 -0.29 -14.40 16 5 H 0.06 1.80 7.74 -52.49 -0.41 1.39 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.36 11.32 55.43 0.63 -24.74 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.27 6.49 6.39 -155.76 -0.99 5.49 16 13 N -0.50 -12.27 11.27 -11.02 -0.12 -12.40 16 14 C -0.03 -0.59 11.84 -17.95 -0.21 -0.81 16 15 C -0.07 -1.22 6.57 -81.73 -0.54 -1.76 16 16 N -0.46 -9.21 3.13 -109.43 -0.34 -9.55 16 17 C 0.11 1.68 6.42 -3.91 -0.03 1.65 16 18 C -0.13 -1.52 5.92 -26.52 -0.16 -1.68 16 19 C -0.12 -1.38 5.96 -26.39 -0.16 -1.53 16 20 C -0.04 -0.46 6.31 -27.61 -0.17 -0.64 16 21 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 22 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 23 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 25 H 0.16 2.64 8.06 -52.49 -0.42 2.21 16 26 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.09 1.38 7.83 -51.93 -0.41 0.98 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.83 8.11 -51.93 -0.42 0.40 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 269.96 15.07 4.07 4.07 Total: -1.00 -31.51 269.96 -8.22 -39.73 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -4.87 Total: -1.84 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -2.56 Total: -12.10 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.16 Total: -46.69 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.51 -8.22 -39.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287397.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.863 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds