Wall clock time and date at job start Mon Mar 30 2020 03:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47028 * 90.00202 * 8 6 4 10 10 H 1.48493 * 109.46961 * 209.99772 * 8 6 4 11 11 H 1.48498 * 109.47538 * 330.00225 * 8 6 4 12 12 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 13 13 N 1.30787 * 125.72377 * 300.02451 * 12 2 1 14 14 C 1.34431 * 109.32125 * 179.97438 * 13 12 2 15 15 C 1.33854 * 107.79774 * 0.02562 * 14 13 12 16 16 N 1.34403 * 125.72466 * 119.71747 * 12 2 1 17 17 C 1.46479 * 128.44119 * 0.89838 * 16 12 2 18 18 C 1.53287 * 108.76347 * 162.19252 * 17 16 12 19 19 C 1.53111 * 109.70632 * 50.53310 * 18 17 16 20 20 C 1.50708 * 128.68086 * 180.02562 * 15 14 13 21 21 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 22 22 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 23 23 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 24 24 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 25 25 H 1.08004 * 126.09751 * 180.02562 * 14 13 12 26 26 H 1.09004 * 109.75507 * 42.29300 * 17 16 12 27 27 H 1.09000 * 109.50422 * 281.93834 * 17 16 12 28 28 H 1.08991 * 109.42933 * 290.45746 * 18 17 16 29 29 H 1.08998 * 109.42613 * 170.60572 * 18 17 16 30 30 H 1.08998 * 109.50242 * 170.13928 * 19 18 17 31 31 H 1.09005 * 109.50021 * 50.03616 * 19 18 17 32 32 H 1.08998 * 109.74327 * 283.92216 * 20 15 14 33 33 H 1.08997 * 109.74827 * 44.64328 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.6307 -0.5440 4.4118 10 1 1.3447 -0.9490 5.1122 11 1 2.4882 -2.5654 3.7122 12 6 2.0323 -0.7104 -1.2305 13 7 1.7859 -1.9551 -1.5477 14 6 2.3944 -2.2465 -2.7105 15 6 3.0367 -1.1470 -3.1230 16 7 2.8039 -0.1695 -2.1889 17 6 3.3440 1.1900 -2.2640 18 6 4.4975 1.2072 -3.2734 19 6 4.0458 0.5584 -4.5846 20 6 3.8662 -0.9513 -4.3659 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7091 1.1614 3.4844 25 1 2.3693 -3.1981 -3.2207 26 1 3.7110 1.4952 -1.2840 27 1 2.5617 1.8748 -2.5911 28 1 5.3433 0.6527 -2.8669 29 1 4.7978 2.2376 -3.4631 30 1 4.8006 0.7267 -5.3528 31 1 3.0998 0.9979 -4.9010 32 1 4.8390 -1.4260 -4.2378 33 1 3.3533 -1.3868 -5.2234 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261287398.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:21 Heat of formation + Delta-G solvation = 40.127517 kcal Electronic energy + Delta-G solvation = -15129.424627 eV Core-core repulsion = 12769.248578 eV Total energy + Delta-G solvation = -2360.176049 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.55954 -36.31283 -34.25008 -32.43003 -30.70665 -29.55831 -26.66602 -25.10285 -23.86504 -22.11631 -21.43996 -19.31267 -18.33541 -16.24498 -15.99166 -15.31810 -14.51648 -14.11434 -13.88786 -13.69526 -13.46245 -12.93055 -12.62655 -12.27521 -11.74658 -11.39348 -11.02344 -10.91116 -10.89429 -10.79629 -10.72233 -10.37715 -10.09813 -9.77437 -9.07352 -8.87804 -8.72426 -8.37160 -7.32008 -6.00594 -4.04876 2.83565 3.33078 3.39557 3.45825 3.52482 4.08000 4.48148 4.69233 4.79796 4.84639 5.16787 5.30896 5.44823 5.55174 5.66202 5.68924 5.74608 5.87760 5.88568 5.95372 6.18058 6.22371 6.42905 6.86587 7.00408 7.16846 7.24533 7.50802 7.65224 7.88620 8.00559 8.16865 8.38496 8.96814 9.13744 9.58686 11.05812 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.039258 B = 0.008155 C = 0.007885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.068240 B = 3432.460116 C = 3549.973533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.120 3.880 3 H 0.036 0.964 4 C -0.495 4.495 5 H 0.060 0.940 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.269 3.731 13 N -0.499 5.499 14 C -0.029 4.029 15 C -0.067 4.067 16 N -0.461 5.461 17 C 0.106 3.894 18 C -0.131 4.131 19 C -0.122 4.122 20 C -0.036 4.036 21 H 0.089 0.911 22 H 0.004 0.996 23 H 0.040 0.960 24 H 0.261 0.739 25 H 0.156 0.844 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.958 2.030 -12.007 13.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.100 3.900 3 H 0.054 0.946 4 C -0.534 4.534 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.006 3.994 13 N -0.216 5.216 14 C -0.177 4.177 15 C -0.180 4.180 16 N -0.144 5.144 17 C -0.017 4.017 18 C -0.169 4.169 19 C -0.160 4.160 20 C -0.075 4.075 21 H 0.107 0.893 22 H 0.023 0.977 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.173 0.827 26 H 0.111 0.889 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.444 1.737 -11.416 12.766 hybrid contribution 0.832 0.085 0.346 0.905 sum 6.277 1.822 -11.070 12.856 Atomic orbital electron populations 1.21705 0.96461 1.00386 0.99942 1.17399 0.93434 0.93866 0.85329 0.94608 1.20985 1.30990 1.12220 0.89217 0.92137 1.24921 0.95103 0.95070 0.98942 1.69873 1.36901 1.23046 1.23534 0.86490 0.78368 0.80312 0.82293 1.20817 1.21141 1.19730 1.24417 0.92782 0.89768 0.92384 1.70539 1.25035 1.12666 1.13374 1.21751 1.01991 0.97815 0.96176 1.20800 1.09572 0.91183 0.96452 1.45397 1.39726 1.10501 1.18806 1.21814 0.96432 0.82075 1.01403 1.21847 0.97800 1.01900 0.95324 1.21648 1.01677 0.95681 0.96987 1.20066 0.98192 0.95991 0.93217 0.89273 0.97660 0.94081 0.92899 0.82707 0.88886 0.90537 0.91022 0.90127 0.91252 0.91644 0.90997 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 8.95 37.16 0.33 -2.89 16 2 C 0.12 3.12 2.68 -92.92 -0.25 2.88 16 3 H 0.04 0.94 7.28 -51.93 -0.38 0.57 16 4 C -0.50 -14.10 8.55 -34.44 -0.29 -14.39 16 5 H 0.06 1.80 7.74 -52.49 -0.41 1.39 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.34 11.32 55.43 0.63 -24.71 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 12 C 0.27 6.49 6.38 -155.76 -0.99 5.49 16 13 N -0.50 -12.28 11.27 -11.02 -0.12 -12.40 16 14 C -0.03 -0.59 11.84 -17.95 -0.21 -0.81 16 15 C -0.07 -1.22 6.57 -81.73 -0.54 -1.76 16 16 N -0.46 -9.21 3.13 -109.42 -0.34 -9.55 16 17 C 0.11 1.66 6.42 -3.90 -0.03 1.64 16 18 C -0.13 -1.56 5.91 -26.53 -0.16 -1.71 16 19 C -0.12 -1.35 5.96 -26.36 -0.16 -1.51 16 20 C -0.04 -0.47 6.31 -27.57 -0.17 -0.64 16 21 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 22 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 23 H 0.04 1.07 8.14 -51.93 -0.42 0.64 16 24 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.16 2.64 8.06 -52.48 -0.42 2.22 16 26 H 0.09 1.52 7.83 -51.93 -0.41 1.12 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 269.97 15.07 4.07 4.07 Total: -1.00 -31.47 269.97 -8.22 -39.69 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -4.87 Total: -1.77 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -2.56 Total: -12.11 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.16 Total: -46.66 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.47 -8.22 -39.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287398.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.817 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds