Wall clock time and date at job start Mon Mar 30 2020 03:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47028 * 90.00202 * 8 6 4 10 10 H 1.48493 * 109.46961 * 209.99772 * 8 6 4 11 11 H 1.48498 * 109.47538 * 330.00225 * 8 6 4 12 12 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 13 13 N 1.30787 * 125.72377 * 300.02451 * 12 2 1 14 14 C 1.34431 * 109.32125 * 179.97438 * 13 12 2 15 15 C 1.33854 * 107.79774 * 0.02562 * 14 13 12 16 16 N 1.34403 * 125.72466 * 119.71747 * 12 2 1 17 17 C 1.46479 * 128.44119 * 0.89838 * 16 12 2 18 18 C 1.53287 * 108.76347 * 162.19252 * 17 16 12 19 19 C 1.53111 * 109.70632 * 50.53310 * 18 17 16 20 20 C 1.50708 * 128.68086 * 180.02562 * 15 14 13 21 21 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 22 22 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 23 23 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 24 24 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 25 25 H 1.08004 * 126.09751 * 180.02562 * 14 13 12 26 26 H 1.09004 * 109.75507 * 42.29300 * 17 16 12 27 27 H 1.09000 * 109.50422 * 281.93834 * 17 16 12 28 28 H 1.08991 * 109.42933 * 290.45746 * 18 17 16 29 29 H 1.08998 * 109.42613 * 170.60572 * 18 17 16 30 30 H 1.08998 * 109.50242 * 170.13928 * 19 18 17 31 31 H 1.09005 * 109.50021 * 50.03616 * 19 18 17 32 32 H 1.08998 * 109.74327 * 283.92216 * 20 15 14 33 33 H 1.08997 * 109.74827 * 44.64328 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.6307 -0.5440 4.4118 10 1 1.3447 -0.9490 5.1122 11 1 2.4882 -2.5654 3.7122 12 6 2.0323 -0.7104 -1.2305 13 7 1.7859 -1.9551 -1.5477 14 6 2.3944 -2.2465 -2.7105 15 6 3.0367 -1.1470 -3.1230 16 7 2.8039 -0.1695 -2.1889 17 6 3.3440 1.1900 -2.2640 18 6 4.4975 1.2072 -3.2734 19 6 4.0458 0.5584 -4.5846 20 6 3.8662 -0.9513 -4.3659 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7091 1.1614 3.4844 25 1 2.3693 -3.1981 -3.2207 26 1 3.7110 1.4952 -1.2840 27 1 2.5617 1.8748 -2.5911 28 1 5.3433 0.6527 -2.8669 29 1 4.7978 2.2376 -3.4631 30 1 4.8006 0.7267 -5.3528 31 1 3.0998 0.9979 -4.9010 32 1 4.8390 -1.4260 -4.2378 33 1 3.3533 -1.3868 -5.2234 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261287398.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:21 Heat of formation + Delta-G solvation = 21.527540 kcal Electronic energy + Delta-G solvation = -15130.231183 eV Core-core repulsion = 12769.248578 eV Total energy + Delta-G solvation = -2360.982605 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.10749 -37.53066 -36.24136 -33.88763 -32.60343 -30.97228 -28.14268 -27.26690 -25.11504 -23.87789 -22.73367 -20.94797 -19.69297 -18.28940 -17.68150 -16.68382 -16.49573 -15.22606 -15.07289 -14.97645 -14.86434 -14.59893 -14.15691 -14.02869 -13.53912 -13.04607 -12.87701 -12.60823 -12.40204 -12.22078 -12.02544 -11.87924 -11.81268 -11.61463 -11.14383 -10.60082 -10.51217 -10.30515 -8.90691 -8.14643 -6.27147 1.29173 1.38697 1.41278 1.52683 2.07343 2.35242 2.48064 3.12659 3.64987 3.80537 3.85132 3.94279 4.08384 4.35762 4.44132 4.50673 4.64521 4.73623 4.84017 4.89109 4.92592 5.02580 5.03550 5.11542 5.18025 5.32678 5.49166 5.64653 5.75097 5.90133 6.10001 6.22787 6.53994 6.75294 7.39425 7.48160 8.90230 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.039258 B = 0.008155 C = 0.007885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.068240 B = 3432.460116 C = 3549.973533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.124 3.876 3 H 0.024 0.976 4 C -0.517 4.517 5 H 0.038 0.962 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.957 3.043 9 H -0.271 1.271 10 H -0.275 1.275 11 H -0.279 1.279 12 C 0.228 3.772 13 N -0.538 5.538 14 C -0.066 4.066 15 C -0.042 4.042 16 N -0.460 5.460 17 C 0.092 3.908 18 C -0.123 4.123 19 C -0.118 4.118 20 C -0.037 4.037 21 H 0.071 0.929 22 H 0.021 0.979 23 H 0.024 0.976 24 H 0.266 0.734 25 H 0.181 0.819 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.541 2.497 -13.733 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 H 0.042 0.958 4 C -0.556 4.556 5 H 0.056 0.944 6 C -0.179 4.179 7 N -0.552 5.552 8 Si 0.783 3.217 9 H -0.196 1.196 10 H -0.200 1.200 11 H -0.204 1.204 12 C -0.035 4.035 13 N -0.256 5.256 14 C -0.213 4.213 15 C -0.156 4.156 16 N -0.143 5.143 17 C -0.029 4.029 18 C -0.161 4.161 19 C -0.155 4.155 20 C -0.075 4.075 21 H 0.090 0.910 22 H 0.040 0.960 23 H 0.043 0.957 24 H 0.075 0.925 25 H 0.198 0.802 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.132 0.868 30 H 0.125 0.875 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.033 2.230 -13.148 15.077 hybrid contribution 0.359 -0.058 0.806 0.885 sum 7.392 2.172 -12.342 14.550 Atomic orbital electron populations 1.21516 0.96646 0.99150 0.99794 1.17135 0.93309 0.93169 0.86019 0.95782 1.21095 1.31518 1.11989 0.90978 0.94392 1.25619 0.95133 0.95724 1.01422 1.69954 1.37114 1.23697 1.24407 0.85569 0.78463 0.78696 0.79018 1.19618 1.19975 1.20433 1.23815 0.95900 0.90331 0.93477 1.70378 1.26340 1.13401 1.15526 1.22287 1.03244 0.99986 0.95745 1.21686 1.07405 0.89608 0.96921 1.45598 1.38519 1.12171 1.17986 1.22183 0.98302 0.80193 1.02243 1.21886 0.95576 1.04144 0.94482 1.21679 1.02838 0.93811 0.97213 1.20355 0.98147 0.98053 0.90984 0.90987 0.95979 0.95686 0.92473 0.80223 0.90459 0.89541 0.91421 0.86839 0.87512 0.91819 0.89188 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.95 8.95 71.98 0.64 -5.30 16 2 C 0.12 6.71 2.68 -12.29 -0.03 6.67 16 3 H 0.02 1.33 7.28 -2.39 -0.02 1.31 16 4 C -0.52 -30.52 8.55 25.60 0.22 -30.30 16 5 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 6 C 0.02 1.15 5.30 84.66 0.45 1.60 16 7 N -0.91 -52.50 11.32 21.45 0.24 -52.26 16 8 Si 0.96 45.27 29.54 68.60 2.03 47.30 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 12 C 0.23 11.28 6.38 138.25 0.88 12.16 16 13 N -0.54 -27.18 11.27 -188.78 -2.13 -29.31 16 14 C -0.07 -2.66 11.84 83.30 0.99 -1.67 16 15 C -0.04 -1.45 6.57 40.73 0.27 -1.19 16 16 N -0.46 -18.23 3.13 -500.10 -1.57 -19.80 16 17 C 0.09 2.82 6.42 86.48 0.55 3.37 16 18 C -0.12 -2.51 5.91 30.73 0.18 -2.32 16 19 C -0.12 -2.06 5.96 30.83 0.18 -1.87 16 20 C -0.04 -0.81 6.31 30.05 0.19 -0.62 16 21 H 0.07 4.01 6.07 -2.39 -0.01 4.00 16 22 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.02 1.33 8.14 -2.39 -0.02 1.32 16 24 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 25 H 0.18 5.96 8.06 -2.91 -0.02 5.94 16 26 H 0.08 2.57 7.83 -2.39 -0.02 2.55 16 27 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.07 1.46 8.11 -2.39 -0.02 1.44 16 29 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.18 8.12 -2.38 -0.02 1.16 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -70.41 269.97 4.18 -66.23 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 1.08 Total: 7.32 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 4.53 Total: -19.48 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -3.45 Total: -101.37 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -70.41 4.18 -66.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287398.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.754 kcal (2) G-P(sol) polarization free energy of solvation -70.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds