Wall clock time and date at job start Mon Mar 30 2020 03:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 13 13 C 1.40058 * 125.87183 * 34.99676 * 12 2 1 14 14 C 1.34746 * 107.80177 * 179.97438 * 13 12 2 15 15 N 1.35298 * 107.90796 * 0.05502 * 14 13 12 16 16 N 1.31018 * 125.87300 * 214.69180 * 12 2 1 17 17 C 1.46594 * 124.54140 * 179.88367 * 15 14 13 18 18 C 1.53244 * 108.79697 * 342.73226 * 17 15 14 19 19 C 1.53145 * 109.56033 * 50.56681 * 18 17 15 20 20 C 1.50866 * 127.76770 * 180.02562 * 14 13 12 21 21 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 23 23 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 25 25 H 1.08001 * 126.09817 * 359.97438 * 13 12 2 26 26 H 1.08996 * 109.58280 * 222.93479 * 17 15 14 27 27 H 1.09003 * 109.69337 * 102.59400 * 17 15 14 28 28 H 1.08999 * 109.45978 * 290.53583 * 18 17 15 29 29 H 1.09000 * 109.45245 * 170.59240 * 18 17 15 30 30 H 1.09002 * 109.51685 * 170.64411 * 19 18 17 31 31 H 1.09001 * 109.56866 * 50.49799 * 19 18 17 32 32 H 1.08995 * 109.72117 * 283.87880 * 20 14 13 33 33 H 1.09002 * 109.71768 * 44.53713 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 3.1365 -2.2939 -3.6038 10 1 1.1525 -1.5961 -4.8105 11 1 3.1331 -0.1969 -4.8221 12 6 2.0324 -0.7104 1.2304 13 6 1.4294 -1.8160 1.8434 14 6 2.1796 -2.1556 2.9100 15 7 3.2228 -1.2965 2.9754 16 7 3.1113 -0.4036 1.9074 17 6 4.2679 -1.3348 4.0026 18 6 3.7699 -2.1761 5.1827 19 6 3.2407 -3.5181 4.6685 20 6 1.9419 -3.2811 3.8862 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7011 1.1560 -3.4844 25 1 0.5246 -2.3085 1.5191 26 1 4.4842 -0.3218 4.3417 27 1 5.1720 -1.7829 3.5903 28 1 2.9698 -1.6432 5.6965 29 1 4.5924 -2.3518 5.8760 30 1 3.0420 -4.1787 5.5125 31 1 3.9822 -3.9763 4.0141 32 1 1.1420 -3.0081 4.5744 33 1 1.6686 -4.1864 3.3442 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261288886.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:23 Heat of formation + Delta-G solvation = 35.818342 kcal Electronic energy + Delta-G solvation = -14842.056945 eV Core-core repulsion = 12481.694036 eV Total energy + Delta-G solvation = -2360.362909 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.28542 -37.72097 -35.92231 -33.46993 -32.69269 -30.46497 -28.60417 -27.23019 -25.15057 -23.75938 -22.74851 -20.44446 -19.53210 -18.32346 -17.41654 -16.67049 -16.52048 -15.29882 -15.02968 -14.95574 -14.84076 -14.46918 -14.32054 -13.53208 -13.44698 -12.89638 -12.83526 -12.55849 -12.32695 -12.21258 -11.94366 -11.83680 -11.80896 -11.64388 -11.23316 -11.08904 -10.47755 -9.74548 -9.25853 -8.11778 -6.26337 1.09019 1.40137 1.40554 1.53486 1.80869 2.05750 2.46023 3.14525 3.57553 3.73749 3.86227 3.90932 4.18961 4.36746 4.49656 4.60967 4.78094 4.85905 4.88379 4.92942 4.99301 5.04219 5.04672 5.14852 5.21686 5.32368 5.36154 5.54660 5.83801 5.88844 6.06105 6.30323 6.39555 6.78334 7.07560 7.40571 8.93780 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.045369 B = 0.007009 C = 0.006834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.009985 B = 3994.167914 C = 4096.211605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.110 3.890 3 H -0.003 1.003 4 C -0.520 4.520 5 H 0.040 0.960 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.962 3.038 9 H -0.274 1.274 10 H -0.270 1.270 11 H -0.278 1.278 12 C 0.096 3.904 13 C -0.292 4.292 14 C 0.082 3.918 15 N -0.385 5.385 16 N -0.359 5.359 17 C 0.120 3.880 18 C -0.124 4.124 19 C -0.121 4.121 20 C -0.054 4.054 21 H 0.040 0.960 22 H 0.024 0.976 23 H 0.065 0.935 24 H 0.265 0.735 25 H 0.144 0.856 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.122 0.878 30 H 0.112 0.888 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.078 -9.733 15.954 18.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.090 3.910 3 H 0.015 0.985 4 C -0.559 4.559 5 H 0.058 0.942 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.787 3.213 9 H -0.199 1.199 10 H -0.195 1.195 11 H -0.203 1.203 12 C -0.068 4.068 13 C -0.321 4.321 14 C -0.047 4.047 15 N -0.168 5.168 16 N -0.181 5.181 17 C 0.000 4.000 18 C -0.162 4.162 19 C -0.158 4.158 20 C -0.093 4.093 21 H 0.059 0.941 22 H 0.043 0.957 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.162 0.838 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.141 0.859 30 H 0.130 0.870 31 H 0.081 0.919 32 H 0.122 0.878 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.149 -8.812 16.043 18.768 hybrid contribution -0.349 -0.295 -1.386 1.459 sum 3.800 -9.107 14.658 17.670 Atomic orbital electron populations 1.21530 0.95950 0.99816 0.99837 1.17158 0.93648 0.92980 0.87216 0.98468 1.21159 1.31359 1.12252 0.91117 0.94168 1.25719 0.95101 0.95744 1.01693 1.70015 1.37302 1.23885 1.24256 0.85449 0.78390 0.78446 0.79013 1.19878 1.19488 1.20339 1.23035 0.91856 0.95989 0.95964 1.21104 1.06325 1.03578 1.01078 1.21641 0.89452 0.95327 0.98248 1.48962 1.21655 1.23844 1.22346 1.77162 1.22039 1.17177 1.01730 1.22101 0.88510 1.02946 0.86411 1.21961 1.03441 0.95460 0.95360 1.21701 0.95787 0.97397 1.00940 1.20642 1.00197 0.93426 0.95028 0.94089 0.95697 0.91601 0.92567 0.83794 0.89492 0.90050 0.90650 0.85937 0.86999 0.91911 0.87794 0.88222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.89 8.56 71.98 0.62 -5.27 16 2 C 0.11 6.33 2.76 -12.29 -0.03 6.30 16 3 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 4 C -0.52 -31.40 8.55 25.60 0.22 -31.18 16 5 H 0.04 2.48 7.74 -2.91 -0.02 2.46 16 6 C 0.02 0.95 5.30 84.66 0.45 1.39 16 7 N -0.92 -54.74 11.31 21.45 0.24 -54.50 16 8 Si 0.96 45.68 29.54 68.60 2.03 47.71 16 9 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 C 0.10 4.98 6.07 43.12 0.26 5.24 16 13 C -0.29 -12.63 9.93 21.91 0.22 -12.41 16 14 C 0.08 2.85 6.59 41.28 0.27 3.12 16 15 N -0.38 -14.53 4.04 -334.09 -1.35 -15.88 16 16 N -0.36 -17.91 12.62 -47.18 -0.60 -18.50 16 17 C 0.12 3.03 7.28 86.44 0.63 3.66 16 18 C -0.12 -1.90 5.93 30.72 0.18 -1.72 16 19 C -0.12 -1.81 5.97 30.80 0.18 -1.63 16 20 C -0.05 -1.15 6.29 30.06 0.19 -0.96 16 21 H 0.04 1.99 7.31 -2.38 -0.02 1.97 16 22 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.07 3.69 6.06 -2.39 -0.01 3.68 16 24 H 0.27 14.81 8.31 -92.70 -0.77 14.04 16 25 H 0.14 5.83 7.43 -2.91 -0.02 5.81 16 26 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 1.17 8.12 -2.39 -0.02 1.15 16 29 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 1.05 8.12 -2.39 -0.02 1.03 16 32 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -74.31 270.27 4.59 -69.72 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: 1.08 Total: 4.91 kcal Atomic # 6 Polarization: -36.64 SS G_CDS: 3.19 Total: -33.46 kcal Atomic # 7 Polarization: -87.18 SS G_CDS: -1.70 Total: -88.88 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -74.31 4.59 -69.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288886.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.537 kcal (2) G-P(sol) polarization free energy of solvation -74.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds