Wall clock time and date at job start Mon Mar 30 2020 03:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46999 * 2 1 4 4 C 1.53007 * 109.46889 * 119.99287 * 2 1 3 5 5 N 1.46898 * 109.47126 * 175.00198 * 4 2 1 6 6 N 1.46493 * 109.47431 * 239.99537 * 2 1 3 7 7 C 1.39691 * 119.99904 * 85.00050 * 6 2 1 8 8 C 1.39333 * 119.94909 * 0.02562 * 7 6 2 9 9 C 1.38479 * 120.42039 * 179.97438 * 8 7 6 10 10 C 1.37691 * 120.32516 * 0.25284 * 9 8 7 11 11 C 1.40741 * 119.89290 * 359.49575 * 10 9 8 12 12 C 1.41404 * 120.20872 * 180.25450 * 11 10 9 13 13 H 1.07999 * 120.00199 * 204.60059 * 12 11 10 14 14 C 1.39932 * 120.00000 * 24.60269 * 12 11 10 15 15 N 1.30831 * 120.00018 * 17.74732 * 14 12 11 16 16 Si 1.86802 * 119.99939 * 197.75403 * 14 12 11 17 17 H 1.48492 * 109.47201 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47238 * 119.99989 * 16 14 12 19 19 H 1.48503 * 109.46832 * 239.99716 * 16 14 12 20 20 C 1.38276 * 119.95118 * 179.97438 * 7 6 2 21 21 H 1.09004 * 109.46543 * 60.00075 * 1 2 3 22 22 H 1.09000 * 109.46999 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47525 * 300.00545 * 1 2 3 24 24 H 1.08996 * 109.47367 * 295.00687 * 4 2 1 25 25 H 1.09002 * 109.46654 * 55.00483 * 4 2 1 26 26 H 1.00894 * 111.00123 * 180.02562 * 5 4 2 27 27 H 1.00910 * 110.99916 * 303.95745 * 5 4 2 28 28 H 0.96996 * 120.00272 * 265.00300 * 6 2 1 29 29 H 1.07997 * 119.78902 * 359.94808 * 8 7 6 30 30 H 1.08005 * 119.83740 * 179.97438 * 9 8 7 31 31 H 1.08000 * 120.04655 * 179.72546 * 10 9 8 32 32 H 0.96998 * 120.00313 * 180.02562 * 15 14 12 33 33 H 1.08004 * 120.16324 * 0.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 3.5040 -0.8265 1.1907 6 7 2.0184 -0.6907 -1.1960 7 6 2.1519 0.0061 -2.3994 8 6 1.8207 1.3581 -2.4607 9 6 1.9497 2.0585 -3.6484 10 6 2.4022 1.4244 -4.7837 11 6 2.7456 0.0604 -4.7357 12 6 3.2162 -0.5961 -5.8964 13 1 3.1057 -1.6660 -5.9939 14 6 3.8250 0.1404 -6.9186 15 7 4.2736 1.3457 -6.6784 16 14 3.9970 -0.5972 -8.6262 17 1 3.4142 -1.9630 -8.6364 18 1 3.2795 0.2550 -9.6081 19 1 5.4346 -0.6701 -8.9913 20 6 2.6134 -0.6466 -3.5276 21 1 -0.3632 0.5139 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.7515 -0.1582 2.1371 25 1 1.6054 -1.7197 1.2953 26 1 3.8654 -1.2998 2.0051 27 1 3.7996 -1.2883 0.3435 28 1 2.2491 -1.6318 -1.1524 29 1 1.4606 1.8630 -1.5765 30 1 1.6899 3.1062 -3.6854 31 1 2.4969 1.9739 -5.7087 32 1 4.6952 1.8565 -7.3871 33 1 2.8709 -1.6945 -3.4811 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306368758.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:40 Heat of formation + Delta-G solvation = -6.403002 kcal Electronic energy + Delta-G solvation = -14535.203379 eV Core-core repulsion = 12173.009614 eV Total energy + Delta-G solvation = -2362.193764 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.88197 -37.90592 -35.55482 -33.96119 -31.94794 -31.46839 -28.60573 -27.11509 -25.72660 -23.06550 -22.47072 -21.05971 -19.23101 -17.55419 -17.15022 -16.51657 -16.32302 -16.15438 -15.68760 -14.79398 -14.59647 -14.04210 -13.93760 -13.88594 -13.25775 -13.17547 -12.88509 -12.80101 -12.68403 -12.34879 -12.08680 -11.83058 -11.57316 -11.16689 -11.04091 -10.45855 -9.58036 -9.31714 -8.59476 -7.90352 -6.30961 1.05951 1.36343 1.39838 1.54594 1.60328 2.23597 2.78652 2.82236 3.63009 3.87284 4.02832 4.24245 4.49733 4.51124 4.67822 4.76028 4.81503 4.86862 5.06780 5.16744 5.18276 5.28692 5.39019 5.45127 5.62003 5.97817 6.04109 6.20850 6.23512 6.33434 6.58864 6.64798 6.91812 7.03815 7.07607 7.27747 8.39138 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.047967 B = 0.006386 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.589427 B = 4383.536299 C = 4598.149729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.151 3.849 3 H 0.063 0.937 4 C 0.063 3.937 5 N -0.861 5.861 6 N -0.743 5.743 7 C 0.240 3.760 8 C -0.302 4.302 9 C -0.077 4.077 10 C -0.234 4.234 11 C 0.111 3.889 12 C -0.503 4.503 13 H 0.072 0.928 14 C 0.035 3.965 15 N -0.826 5.826 16 Si 0.982 3.018 17 H -0.259 1.259 18 H -0.264 1.264 19 H -0.265 1.265 20 C -0.312 4.312 21 H 0.041 0.959 22 H 0.058 0.942 23 H 0.082 0.918 24 H 0.096 0.904 25 H 0.041 0.959 26 H 0.351 0.649 27 H 0.341 0.659 28 H 0.391 0.609 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.286 0.714 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.920 -3.785 10.285 11.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.081 0.919 4 C -0.068 4.068 5 N -0.393 5.393 6 N -0.375 5.375 7 C 0.139 3.861 8 C -0.325 4.325 9 C -0.096 4.096 10 C -0.255 4.255 11 C 0.108 3.892 12 C -0.532 4.532 13 H 0.090 0.910 14 C -0.179 4.179 15 N -0.452 5.452 16 Si 0.803 3.197 17 H -0.182 1.182 18 H -0.189 1.189 19 H -0.190 1.190 20 C -0.336 4.336 21 H 0.060 0.940 22 H 0.078 0.922 23 H 0.101 0.899 24 H 0.115 0.885 25 H 0.059 0.941 26 H 0.164 0.836 27 H 0.154 0.846 28 H 0.225 0.775 29 H 0.128 0.872 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.870 -2.653 10.354 11.368 hybrid contribution 0.191 -1.418 -0.940 1.712 sum -3.678 -4.071 9.415 10.897 Atomic orbital electron populations 1.22203 0.95333 1.02267 1.02167 1.20932 0.93581 0.96827 0.84146 0.91918 1.22031 0.88094 0.99296 0.97358 1.58605 1.10332 1.62244 1.08131 1.44466 1.74835 1.11416 1.06739 1.17467 0.91960 0.91162 0.85535 1.20169 1.20330 0.93694 0.98257 1.20728 0.97612 0.98068 0.93181 1.21085 1.10007 0.96420 0.97954 1.17711 0.87111 0.92342 0.91991 1.19816 1.35914 0.95447 1.02055 0.91014 1.26775 0.92046 0.94785 1.04337 1.69933 1.27698 1.12039 1.35489 0.85168 0.78858 0.79448 0.76219 1.18233 1.18869 1.18990 1.20506 1.20707 0.99356 0.93029 0.93992 0.92244 0.89933 0.88537 0.94130 0.83555 0.84616 0.77498 0.87197 0.87669 0.88737 0.90323 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 9.42 71.98 0.68 -3.23 16 2 C 0.15 4.15 2.57 45.00 0.12 4.27 16 3 H 0.06 2.00 6.47 -2.39 -0.02 1.99 16 4 C 0.06 1.32 6.40 86.31 0.55 1.87 16 5 N -0.86 -19.50 9.61 -186.71 -1.80 -21.30 16 6 N -0.74 -25.16 4.53 -319.11 -1.44 -26.60 16 7 C 0.24 10.78 6.63 38.16 0.25 11.03 16 8 C -0.30 -13.78 8.86 22.59 0.20 -13.58 16 9 C -0.08 -3.82 10.02 22.20 0.22 -3.60 16 10 C -0.23 -13.14 8.69 22.75 0.20 -12.94 16 11 C 0.11 6.37 5.57 -21.31 -0.12 6.25 16 12 C -0.50 -28.49 9.05 23.46 0.21 -28.28 16 13 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 14 C 0.04 1.85 5.14 85.25 0.44 2.29 16 15 N -0.83 -45.32 10.96 21.82 0.24 -45.08 16 16 Si 0.98 39.68 29.59 68.60 2.03 41.71 16 17 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 18 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 19 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 20 C -0.31 -15.99 9.63 22.86 0.22 -15.77 16 21 H 0.04 1.23 7.70 -2.38 -0.02 1.21 16 22 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.35 6.02 9.08 -89.70 -0.81 5.20 16 27 H 0.34 8.47 7.84 -89.69 -0.70 7.77 16 28 H 0.39 11.98 8.16 -92.71 -0.76 11.23 16 29 H 0.11 4.46 6.07 -2.91 -0.02 4.44 16 30 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 31 H 0.09 5.55 6.16 -2.91 -0.02 5.53 16 32 H 0.29 14.11 8.30 -92.71 -0.77 13.35 16 33 H 0.09 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -63.45 274.35 0.86 -62.59 By element: Atomic # 1 Polarization: 41.52 SS G_CDS: -1.14 Total: 40.38 kcal Atomic # 6 Polarization: -54.68 SS G_CDS: 2.97 Total: -51.71 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -3.00 Total: -92.97 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -63.45 0.86 -62.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306368758.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.183 kcal (2) G-P(sol) polarization free energy of solvation -63.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds