Wall clock time and date at job start Mon Mar 30 2020 03:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00026 * 2 1 4 4 H 1.48501 * 109.47433 * 269.99734 * 3 2 1 5 5 H 1.48504 * 109.47144 * 29.99858 * 3 2 1 6 6 H 1.48503 * 109.47378 * 149.99746 * 3 2 1 7 7 C 1.38815 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00165 * 164.50060 * 7 2 1 9 9 N 1.36933 * 120.00210 * 344.50610 * 7 2 1 10 10 C 1.47336 * 121.37296 * 155.94564 * 9 7 2 11 11 C 1.53096 * 107.89374 * 118.14482 * 10 9 7 12 12 C 1.49974 * 110.25351 * 45.60522 * 11 10 9 13 13 Cl 1.73598 * 117.71853 * 160.88253 * 12 11 10 14 14 C 1.29521 * 124.75659 * 340.68439 * 12 11 10 15 15 Cl 1.73593 * 118.27149 * 181.04174 * 14 12 11 16 16 C 1.47006 * 121.36721 * 335.97553 * 9 7 2 17 17 H 0.97001 * 120.00380 * 0.02562 * 1 2 3 18 18 H 1.08998 * 109.76846 * 358.55169 * 10 9 7 19 19 H 1.08991 * 109.77642 * 237.75021 * 10 9 7 20 20 H 1.09006 * 109.31553 * 165.79114 * 11 10 9 21 21 H 1.08995 * 109.31808 * 285.40576 * 11 10 9 22 22 H 1.09004 * 109.51671 * 342.88170 * 16 9 7 23 23 H 1.08992 * 109.52812 * 103.07140 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0607 -1.2193 -0.2494 9 7 1.3629 -2.3664 0.3178 10 6 1.8585 -3.6720 -0.1517 11 6 2.2119 -4.5113 1.0790 12 6 1.1201 -4.4168 2.1028 13 17 1.0516 -5.6466 3.3261 14 6 0.2250 -3.4815 2.1436 15 17 -0.9481 -3.5213 3.4226 16 6 0.1446 -2.3648 1.1405 17 1 -0.4851 0.8400 -0.0004 18 1 2.7460 -3.5295 -0.7681 19 1 1.0834 -4.1742 -0.7304 20 1 2.3379 -5.5523 0.7815 21 1 3.1433 -4.1444 1.5102 22 1 0.0589 -1.4117 1.6625 23 1 -0.7264 -2.5110 0.5018 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306453557.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:01 Heat of formation + Delta-G solvation = 17.235470 kcal Electronic energy + Delta-G solvation = -11321.912331 eV Core-core repulsion = 9029.635072 eV Total energy + Delta-G solvation = -2292.277259 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 221.007 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.96142 -35.89611 -35.77422 -32.98740 -30.48899 -29.83023 -25.63092 -23.16976 -21.79699 -18.02201 -16.68095 -15.67928 -14.92864 -14.28821 -14.05587 -13.31037 -13.04872 -12.42301 -12.13687 -11.51519 -11.22560 -11.05560 -10.86304 -10.75069 -10.57009 -10.31189 -10.27104 -9.97855 -9.84450 -8.76058 -8.05373 -6.98393 -5.96022 -3.36859 2.27590 2.42403 2.95660 3.32149 3.39065 3.41028 4.37070 5.18595 5.30322 5.50537 5.72753 5.92920 6.01145 6.29429 6.52276 6.59761 6.69433 6.98315 7.35629 7.64318 8.17748 8.98869 9.61573 10.17143 11.14910 Molecular weight = 221.01amu Principal moments of inertia in cm(-1) A = 0.041417 B = 0.009958 C = 0.008719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.889183 B = 2811.205559 C = 3210.615081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.005 3.995 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.257 4.257 8 H 0.074 0.926 9 N -0.589 5.589 10 C 0.140 3.860 11 C -0.085 4.085 12 C -0.074 4.074 13 Cl -0.110 7.110 14 C -0.056 4.056 15 Cl -0.094 7.094 16 C 0.213 3.787 17 H 0.258 0.742 18 H 0.071 0.929 19 H 0.033 0.967 20 H 0.073 0.927 21 H 0.079 0.921 22 H 0.108 0.892 23 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.297 -7.503 3.423 8.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.385 4.385 8 H 0.092 0.908 9 N -0.312 5.312 10 C 0.014 3.986 11 C -0.125 4.125 12 C -0.102 4.102 13 Cl -0.082 7.082 14 C -0.085 4.085 15 Cl -0.065 7.065 16 C 0.087 3.913 17 H 0.069 0.931 18 H 0.090 0.910 19 H 0.051 0.949 20 H 0.092 0.908 21 H 0.098 0.902 22 H 0.125 0.875 23 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.089 -7.429 3.619 8.335 hybrid contribution 0.237 0.667 0.361 0.795 sum 1.327 -6.761 3.980 7.957 Atomic orbital electron populations 1.69965 1.05285 1.26133 1.53468 1.25053 0.95443 0.98629 1.00309 0.86204 0.79121 0.83100 0.77812 1.21194 1.21364 1.20339 1.19162 0.92480 0.83966 1.42940 0.90820 1.44156 1.29366 1.01779 1.55915 1.21092 0.98454 0.86732 0.92359 1.21107 0.95330 1.01037 0.94993 1.22352 1.00856 0.92008 0.94975 1.98325 1.98146 1.55852 1.55885 1.24429 0.91180 0.99882 0.93046 1.98330 1.59305 1.98237 1.50649 1.19904 0.89886 0.93115 0.88436 0.93145 0.91031 0.94903 0.90835 0.90223 0.87465 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.11 11.08 55.49 0.61 -24.49 14 2 C 0.00 0.12 5.01 -17.43 -0.09 0.04 14 3 Si 0.91 20.95 29.58 -169.99 -5.03 15.92 14 4 H -0.29 -6.55 7.11 56.52 0.40 -6.15 14 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 14 6 H -0.28 -6.32 7.11 56.52 0.40 -5.91 14 7 C -0.26 -6.71 9.71 -15.06 -0.15 -6.86 14 8 H 0.07 1.86 7.88 -52.49 -0.41 1.45 14 9 N -0.59 -14.16 3.01 -173.69 -0.52 -14.68 14 10 C 0.14 2.74 6.57 -3.54 -0.02 2.72 14 11 C -0.08 -1.45 6.06 -28.18 -0.17 -1.62 14 12 C -0.07 -1.38 6.26 -35.96 -0.23 -1.61 14 13 Cl -0.11 -1.83 27.18 -51.86 -1.41 -3.24 14 14 C -0.06 -1.13 6.34 -35.80 -0.23 -1.36 14 15 Cl -0.09 -1.72 27.22 -51.86 -1.41 -3.14 14 16 C 0.21 4.98 5.02 -5.10 -0.03 4.96 14 17 H 0.26 6.95 8.31 -40.82 -0.34 6.61 14 18 H 0.07 1.31 7.96 -51.93 -0.41 0.90 14 19 H 0.03 0.63 8.14 -51.93 -0.42 0.21 14 20 H 0.07 1.07 8.14 -51.93 -0.42 0.64 14 21 H 0.08 1.36 8.14 -51.93 -0.42 0.94 14 22 H 0.11 2.79 6.41 -51.93 -0.33 2.46 14 23 H 0.06 1.41 8.14 -51.93 -0.42 0.99 14 LS Contribution 227.49 15.07 3.43 3.43 Total: -1.00 -26.91 227.49 -7.22 -34.13 By element: Atomic # 1 Polarization: -2.20 SS G_CDS: -1.99 Total: -4.19 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -0.91 Total: -3.74 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.09 Total: -39.17 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Atomic # 17 Polarization: -3.56 SS G_CDS: -2.82 Total: -6.38 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -26.91 -7.22 -34.13 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306453557.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.365 kcal (2) G-P(sol) polarization free energy of solvation -26.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds