Wall clock time and date at job start Mon Mar 30 2020 03:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30604 * 1 3 3 Si 1.86800 * 119.99621 * 2 1 4 4 H 1.48508 * 109.47183 * 239.99716 * 3 2 1 5 5 H 1.48494 * 109.47288 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47086 * 120.00006 * 3 2 1 7 7 C 1.40337 * 120.00533 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00294 * 179.97438 * 7 2 1 9 9 C 1.39675 * 119.99507 * 0.02562 * 7 2 1 10 10 N 1.32521 * 125.12890 * 359.69236 * 9 7 2 11 11 C 1.33974 * 108.94872 * 179.86635 * 10 9 7 12 12 C 1.40650 * 133.39851 * 180.15146 * 11 10 9 13 13 C 1.36128 * 119.90129 * 180.27895 * 12 11 10 14 14 C 1.39963 * 120.52800 * 359.97438 * 13 12 11 15 15 S 1.76204 * 119.80408 * 180.02562 * 14 13 12 16 16 C 1.39187 * 120.38645 * 359.97438 * 14 13 12 17 17 C 1.38010 * 119.75651 * 0.02583 * 16 14 13 18 18 O 1.35145 * 125.12606 * 179.97438 * 9 7 2 19 19 H 0.96991 * 120.00547 * 0.02562 * 1 2 3 20 20 H 1.07997 * 120.04755 * 0.25653 * 12 11 10 21 21 H 1.08002 * 119.73223 * 179.97438 * 13 12 11 22 22 H 1.34505 * 102.99698 * 269.98234 * 15 14 13 23 23 H 1.07994 * 120.12013 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 3.0938 1.6965 -1.2125 5 1 1.2749 2.7464 0.0006 6 1 3.0937 1.6965 1.2125 7 6 2.0078 -1.2153 0.0005 8 1 3.0878 -1.2152 0.0001 9 6 1.3095 -2.4249 0.0005 10 7 -0.0104 -2.5434 0.0059 11 6 -0.3304 -3.8443 0.0011 12 6 -1.5537 -4.5386 0.0005 13 6 -1.5613 -5.8999 0.0006 14 6 -0.3597 -6.6176 0.0008 15 16 -0.3919 -8.3794 0.0002 16 6 0.8604 -5.9479 0.0002 17 6 0.8843 -4.5680 0.0001 18 8 1.8779 -3.6510 0.0005 19 1 -0.4850 0.8399 -0.0004 20 1 -2.4854 -3.9925 0.0004 21 1 -2.5022 -6.4302 0.0006 22 1 -0.3974 -8.6822 1.3107 23 1 1.7850 -6.5060 -0.0001 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306595543.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:07 Heat of formation + Delta-G solvation = 4.717227 kcal Electronic energy + Delta-G solvation = -12156.996641 eV Core-core repulsion = 9868.653106 eV Total energy + Delta-G solvation = -2288.343535 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.28983 -38.49010 -36.20424 -34.57905 -31.55455 -31.05174 -28.29874 -24.07380 -23.43040 -22.45600 -19.72425 -19.15303 -18.22350 -17.56008 -17.05272 -16.76964 -16.04558 -15.04119 -14.80381 -14.61549 -13.86000 -13.59936 -13.22819 -13.05942 -12.81628 -12.32010 -12.10318 -12.05986 -11.63226 -11.08661 -10.42789 -9.70467 -9.27490 -9.05531 -8.84768 -7.01508 -0.12470 0.52793 0.79764 1.36201 1.37528 1.56597 1.78625 2.04955 2.11178 2.49200 2.80752 3.17827 3.71863 3.94944 4.32624 4.43769 4.62550 4.83337 4.91991 5.13852 5.39912 5.42908 5.62330 5.81985 6.00287 6.18488 6.41546 7.61134 8.07921 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.084782 B = 0.006703 C = 0.006233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 330.178261 B = 4176.534421 C = 4491.223322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.022 3.978 3 Si 1.024 2.976 4 H -0.249 1.249 5 H -0.260 1.260 6 H -0.250 1.250 7 C -0.417 4.417 8 H 0.120 0.880 9 C 0.320 3.680 10 N -0.585 5.585 11 C 0.093 3.907 12 C -0.156 4.156 13 C -0.040 4.040 14 C -0.182 4.182 15 S -0.100 6.100 16 C -0.020 4.020 17 C -0.112 4.112 18 O -0.270 6.270 19 H 0.299 0.701 20 H 0.130 0.870 21 H 0.163 0.837 22 H 0.068 0.932 23 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.181 -4.048 0.439 4.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.203 4.203 3 Si 0.840 3.160 4 H -0.173 1.173 5 H -0.184 1.184 6 H -0.173 1.173 7 C -0.450 4.450 8 H 0.137 0.863 9 C 0.143 3.857 10 N -0.318 5.318 11 C -0.032 4.032 12 C -0.179 4.179 13 C -0.062 4.062 14 C -0.296 4.296 15 S 0.057 5.943 16 C -0.041 4.041 17 C -0.165 4.165 18 O -0.171 6.171 19 H 0.110 0.890 20 H 0.148 0.852 21 H 0.181 0.819 22 H 0.033 0.967 23 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.397 -4.281 0.221 4.305 hybrid contribution 0.750 0.976 1.050 1.618 sum 0.353 -3.305 1.271 3.559 Atomic orbital electron populations 1.70047 1.09642 1.31818 1.24643 1.27354 0.96049 1.04971 0.91976 0.84641 0.78191 0.72231 0.80953 1.17251 1.18399 1.17318 1.19194 0.96399 0.86252 1.43118 0.86253 1.23098 0.87213 0.84113 0.91307 1.71485 1.11014 1.14378 1.34956 1.21153 0.95383 0.90994 0.95640 1.20053 0.94523 0.93968 1.09357 1.21150 0.97993 0.92204 0.94850 1.20694 0.93899 0.95684 1.19273 1.85398 1.98525 0.98933 1.11476 1.20202 0.98911 0.87439 0.97586 1.20675 0.87821 0.92675 1.15283 1.84609 1.35714 1.16585 1.80162 0.88950 0.85166 0.81919 0.96749 0.84139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.03 11.83 21.89 0.26 -37.77 14 2 C 0.02 1.02 5.50 85.39 0.47 1.49 14 3 Si 1.02 33.62 29.56 68.60 2.03 35.65 14 4 H -0.25 -7.75 7.11 99.48 0.71 -7.04 14 5 H -0.26 -7.99 7.11 99.48 0.71 -7.29 14 6 H -0.25 -7.77 7.11 99.48 0.71 -7.07 14 7 C -0.42 -21.72 9.45 23.13 0.22 -21.50 14 8 H 0.12 5.54 7.85 -2.91 -0.02 5.51 14 9 C 0.32 18.46 7.67 84.94 0.65 19.12 14 10 N -0.58 -34.59 9.35 -301.80 -2.82 -37.41 14 11 C 0.09 4.96 7.23 40.18 0.29 5.25 14 12 C -0.16 -6.79 10.07 22.37 0.23 -6.57 14 13 C -0.04 -1.45 9.71 22.20 0.22 -1.23 14 14 C -0.18 -6.61 6.15 22.92 0.14 -6.46 14 15 S -0.10 -2.83 25.76 -56.49 -1.46 -4.29 14 16 C -0.02 -0.83 9.80 22.44 0.22 -0.61 14 17 C -0.11 -5.73 7.41 22.99 0.17 -5.56 14 18 O -0.27 -14.94 10.84 -20.11 -0.22 -15.16 14 19 H 0.30 13.46 8.29 -92.71 -0.77 12.69 14 20 H 0.13 5.25 8.06 -2.91 -0.02 5.23 14 21 H 0.16 4.50 8.06 -2.91 -0.02 4.47 14 22 H 0.07 1.77 9.07 73.35 0.67 2.43 14 23 H 0.14 5.11 8.06 -2.91 -0.02 5.09 14 Total: -1.00 -63.33 231.03 2.32 -61.01 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 1.92 Total: 14.04 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 2.60 Total: -16.07 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -2.56 Total: -75.18 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.22 Total: -15.16 kcal Atomic # 14 Polarization: 33.62 SS G_CDS: 2.03 Total: 35.65 kcal Atomic # 16 Polarization: -2.83 SS G_CDS: -1.46 Total: -4.29 kcal Total: -63.33 2.32 -61.01 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306595543.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.729 kcal (2) G-P(sol) polarization free energy of solvation -63.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds