Wall clock time and date at job start Mon Mar 30 2020 03:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30851 * 1 3 3 Si 1.86802 * 120.00184 * 2 1 4 4 H 1.48500 * 109.46582 * 83.63053 * 3 2 1 5 5 H 1.48499 * 109.47028 * 203.61989 * 3 2 1 6 6 H 1.48493 * 109.47098 * 323.62699 * 3 2 1 7 7 C 1.39953 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99808 * 24.77732 * 7 2 1 9 9 C 1.41116 * 120.00009 * 204.77823 * 7 2 1 10 10 C 1.40786 * 120.31079 * 25.69093 * 9 7 2 11 11 C 1.37808 * 120.16198 * 179.97438 * 10 9 7 12 12 C 1.38349 * 120.69595 * 359.97438 * 11 10 9 13 13 C 1.39822 * 120.27801 * 0.02562 * 12 11 10 14 14 N 1.36172 * 133.52220 * 180.02562 * 13 12 11 15 15 C 1.30949 * 108.64074 * 179.33825 * 14 13 12 16 16 S 1.76204 * 125.02178 * 180.09974 * 15 14 13 17 17 O 1.34497 * 109.95682 * 0.52787 * 15 14 13 18 18 C 1.35015 * 108.19436 * 359.53550 * 17 15 14 19 19 H 0.96994 * 120.00173 * 173.05706 * 1 2 3 20 20 H 1.08001 * 119.91292 * 359.97438 * 10 9 7 21 21 H 1.07997 * 119.64528 * 180.02562 * 11 10 9 22 22 H 1.08000 * 119.86106 * 180.02562 * 12 11 10 23 23 H 1.40996 * 99.99716 * 0.48775 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.3555 2.1240 1.3915 5 1 3.6010 1.4050 -0.5610 6 1 1.5139 2.6100 -0.8303 7 6 2.0082 -1.2121 -0.0005 8 1 1.5427 -2.1041 -0.3929 9 6 3.3219 -1.2686 0.5116 10 6 3.7486 -0.3377 1.4778 11 6 5.0320 -0.3961 1.9763 12 6 5.9165 -1.3654 1.5379 13 6 5.5179 -2.3017 0.5790 14 7 6.1457 -3.3449 -0.0307 15 6 5.3031 -3.9175 -0.8535 16 16 5.6671 -5.3150 -1.8631 17 8 4.1218 -3.2754 -0.8211 18 6 4.2172 -2.2615 0.0654 19 1 -0.4850 -0.8338 -0.1015 20 1 3.0682 0.4239 1.8292 21 1 5.3503 0.3219 2.7176 22 1 6.9191 -1.3990 1.9380 23 1 7.0060 -5.5467 -1.4868 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306895598.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:51 Heat of formation + Delta-G solvation = 8.450753 kcal Electronic energy + Delta-G solvation = -12379.156749 eV Core-core repulsion = 10090.975112 eV Total energy + Delta-G solvation = -2288.181637 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.025 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.89655 -38.74358 -36.24905 -35.10575 -32.02846 -30.62685 -26.97548 -24.91605 -23.82666 -22.19613 -20.57016 -19.43631 -18.57850 -17.71961 -17.33898 -16.66921 -15.88281 -15.57742 -14.86270 -14.65931 -14.29324 -13.27167 -13.19236 -12.88729 -12.66020 -12.35353 -12.28672 -11.95542 -11.61533 -11.56158 -10.96723 -10.31030 -9.78975 -9.40097 -8.81857 -6.72330 -0.45501 -0.15203 0.58380 1.11911 1.25397 1.40373 1.58565 1.78978 2.10148 2.12077 2.49568 3.19860 3.70116 4.05405 4.35413 4.55029 4.67210 4.74600 5.09606 5.28080 5.34324 5.58522 5.71681 5.81391 6.06791 6.17108 6.47992 6.63338 7.77362 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.036776 B = 0.009988 C = 0.008325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.176976 B = 2802.566182 C = 3362.387692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.019 3.981 3 Si 1.101 2.899 4 H -0.239 1.239 5 H -0.266 1.266 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.046 0.954 9 C 0.111 3.889 10 C -0.262 4.262 11 C -0.043 4.043 12 C -0.211 4.211 13 C 0.051 3.949 14 N -0.512 5.512 15 C 0.200 3.800 16 S 0.069 5.931 17 O -0.205 6.205 18 C -0.105 4.105 19 H 0.283 0.717 20 H 0.130 0.870 21 H 0.160 0.840 22 H 0.135 0.865 23 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.700 -2.685 -0.724 9.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.198 4.198 3 Si 0.919 3.081 4 H -0.163 1.163 5 H -0.190 1.190 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.064 0.936 9 C 0.108 3.892 10 C -0.282 4.282 11 C -0.062 4.062 12 C -0.232 4.232 13 C -0.062 4.062 14 N -0.250 5.250 15 C -0.118 4.118 16 S 0.222 5.778 17 O -0.097 6.097 18 C -0.156 4.156 19 H 0.094 0.906 20 H 0.147 0.853 21 H 0.178 0.822 22 H 0.153 0.847 23 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.894 -2.052 -1.199 9.206 hybrid contribution -0.461 -1.422 0.408 1.549 sum 8.433 -3.473 -0.791 9.154 Atomic orbital electron populations 1.70590 1.08523 1.33425 1.30610 1.28564 0.95587 1.06742 0.88941 0.83285 0.74814 0.69837 0.80192 1.16291 1.19028 1.19953 1.20597 0.99219 0.97792 1.38303 0.93564 1.16924 0.90995 0.89301 0.92026 1.20976 0.98936 1.04863 1.03389 1.20972 0.91652 0.96255 0.97325 1.19930 1.01628 0.98759 1.02897 1.19999 0.90519 0.96043 0.99673 1.71156 1.30990 1.10692 1.12150 1.28161 0.82457 1.00543 1.00629 1.86570 1.21280 1.23025 1.46949 1.84389 1.34815 1.37589 1.52902 1.21002 0.98535 0.96821 0.99253 0.90568 0.85294 0.82220 0.84748 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.87 13.65 21.83 0.30 -42.57 14 2 C 0.02 0.99 5.32 85.25 0.45 1.44 14 3 Si 1.10 45.58 25.03 68.60 1.72 47.30 14 4 H -0.24 -8.62 6.65 99.48 0.66 -7.96 14 5 H -0.27 -11.17 7.05 99.48 0.70 -10.46 14 6 H -0.27 -10.72 7.11 99.48 0.71 -10.01 14 7 C -0.53 -29.75 9.39 23.39 0.22 -29.53 14 8 H 0.05 2.80 8.06 -2.91 -0.02 2.78 14 9 C 0.11 5.88 5.16 -21.29 -0.11 5.77 14 10 C -0.26 -11.93 7.40 22.79 0.17 -11.76 14 11 C -0.04 -1.68 9.99 22.19 0.22 -1.46 14 12 C -0.21 -8.78 10.10 22.68 0.23 -8.56 14 13 C 0.05 2.44 7.22 39.26 0.28 2.73 14 14 N -0.51 -22.58 11.39 -304.38 -3.47 -26.04 14 15 C 0.20 8.25 8.60 130.37 1.12 9.37 14 16 S 0.07 1.83 26.28 -56.49 -1.48 0.34 14 17 O -0.21 -10.27 10.78 -11.52 -0.12 -10.39 14 18 C -0.10 -5.49 7.16 23.34 0.17 -5.32 14 19 H 0.28 14.93 8.73 -92.71 -0.81 14.12 14 20 H 0.13 5.51 4.68 -2.91 -0.01 5.50 14 21 H 0.16 4.63 8.06 -2.91 -0.02 4.61 14 22 H 0.13 4.77 8.06 -2.91 -0.02 4.75 14 23 H 0.15 3.04 9.55 73.80 0.70 3.74 14 Total: -1.00 -63.18 225.42 1.57 -61.61 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 1.88 Total: 7.07 kcal Atomic # 6 Polarization: -40.07 SS G_CDS: 2.75 Total: -37.31 kcal Atomic # 7 Polarization: -65.44 SS G_CDS: -3.17 Total: -68.61 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -0.12 Total: -10.39 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.72 Total: 47.30 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.48 Total: 0.34 kcal Total: -63.18 1.57 -61.61 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306895598.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.058 kcal (2) G-P(sol) polarization free energy of solvation -63.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds