Wall clock time and date at job start Mon Mar 30 2020 03:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39657 * 120.14205 * 277.97031 * 3 2 1 5 5 C 1.37933 * 119.87335 * 180.02562 * 4 3 2 6 6 C 1.38361 * 120.16598 * 0.02801 * 5 4 3 7 7 C 1.38455 * 120.29130 * 359.97438 * 6 5 4 8 8 Cl 1.73597 * 119.93906 * 179.97438 * 7 6 5 9 9 C 1.38095 * 120.12757 * 359.97438 * 7 6 5 10 10 C 1.50699 * 120.08661 * 179.70208 * 9 7 6 11 11 C 1.50700 * 109.46877 * 89.99954 * 10 9 7 12 12 H 1.07999 * 120.00164 * 0.02562 * 11 10 9 13 13 C 1.37871 * 119.99760 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00575 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00024 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46893 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47149 * 120.00011 * 15 13 11 18 18 H 1.48497 * 109.47359 * 239.99850 * 15 13 11 19 19 H 1.08001 * 120.06092 * 0.05145 * 4 3 2 20 20 H 1.07994 * 119.91916 * 180.02562 * 5 4 3 21 21 H 1.07996 * 119.85694 * 179.97438 * 6 5 4 22 22 H 1.09000 * 109.46994 * 210.00040 * 10 9 7 23 23 H 1.08997 * 109.46685 * 330.00177 * 10 9 7 24 24 H 0.97002 * 120.00592 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2694 -0.1665 1.1961 5 6 4.6487 -0.1645 1.1897 6 6 5.3383 0.0033 0.0020 7 6 4.6499 0.1696 -1.1877 8 17 5.5243 0.3800 -2.6725 9 6 3.2689 0.1685 -1.1955 10 6 2.5206 0.3563 -2.4900 11 6 2.2735 -0.9870 -3.1268 12 1 2.6230 -1.8868 -2.6423 13 6 1.6003 -1.0674 -4.3273 14 7 1.1742 0.0281 -4.9170 15 14 1.2934 -2.7326 -5.1163 16 1 1.8680 -3.8001 -4.2588 17 1 -0.1685 -2.9491 -5.2626 18 1 1.9359 -2.7723 -6.4545 19 1 2.7327 -0.2975 2.1241 20 1 5.1918 -0.2941 2.1141 21 1 6.4182 0.0045 0.0029 22 1 1.5668 0.8449 -2.2907 23 1 3.1119 0.9751 -3.1649 24 1 0.7009 -0.0284 -5.7618 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306910557.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:25 Heat of formation + Delta-G solvation = 16.847901 kcal Electronic energy + Delta-G solvation = -12072.658224 eV Core-core repulsion = 9782.797009 eV Total energy + Delta-G solvation = -2289.861216 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.030 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.54780 -37.58972 -36.98255 -35.51523 -33.21575 -31.94550 -29.11179 -25.59554 -24.53251 -22.37384 -19.64978 -18.54493 -17.01885 -16.88522 -16.34685 -15.77020 -15.22923 -14.49013 -14.31531 -14.12159 -13.83975 -13.72700 -13.48188 -12.98741 -12.79590 -12.43919 -12.27124 -12.20756 -11.91640 -11.57465 -11.30902 -10.61078 -9.76051 -9.49893 -8.22176 -6.32698 -0.16638 0.35642 1.32622 1.35240 1.36570 1.48350 1.80473 1.98557 2.37167 2.91496 3.03217 3.11470 3.98897 4.11576 4.14780 4.46330 4.70711 4.92790 5.05925 5.31905 5.35794 5.36996 5.65714 5.71901 5.84562 6.10182 6.55503 6.77909 7.34757 8.88194 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.024143 B = 0.011800 C = 0.008987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.469047 B = 2372.298837 C = 3114.763781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.283 3.717 3 C -0.052 4.052 4 C -0.052 4.052 5 C -0.110 4.110 6 C -0.069 4.069 7 C -0.059 4.059 8 Cl -0.072 7.072 9 C -0.015 4.015 10 C 0.049 3.951 11 C -0.512 4.512 12 H 0.056 0.944 13 C 0.008 3.992 14 N -0.927 5.927 15 Si 0.954 3.046 16 H -0.261 1.261 17 H -0.285 1.285 18 H -0.273 1.273 19 H 0.166 0.834 20 H 0.189 0.811 21 H 0.168 0.832 22 H -0.006 1.006 23 H 0.029 0.971 24 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.624 -0.766 12.277 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.148 5.148 2 C -0.031 4.031 3 C -0.056 4.056 4 C -0.073 4.073 5 C -0.127 4.127 6 C -0.088 4.088 7 C -0.085 4.085 8 Cl -0.043 7.043 9 C -0.019 4.019 10 C 0.012 3.988 11 C -0.550 4.550 12 H 0.074 0.926 13 C -0.190 4.190 14 N -0.568 5.568 15 Si 0.779 3.221 16 H -0.184 1.184 17 H -0.211 1.211 18 H -0.199 1.199 19 H 0.183 0.817 20 H 0.206 0.794 21 H 0.185 0.815 22 H 0.013 0.987 23 H 0.047 0.953 24 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.851 -0.687 11.992 15.535 hybrid contribution -0.282 -0.491 -1.380 1.492 sum 9.569 -1.177 10.612 14.338 Atomic orbital electron populations 1.81099 1.13495 1.10717 1.09469 1.25895 0.93123 0.92331 0.91743 1.16027 0.83580 1.10799 0.95168 1.21585 0.95343 0.94616 0.95724 1.21429 0.92601 0.99735 0.98961 1.21671 1.02097 0.95376 0.89651 1.20801 0.90872 1.07970 0.88907 1.98350 1.74982 1.95641 1.35297 1.20282 0.93205 0.93115 0.95275 1.18226 0.93677 0.97180 0.89748 1.21169 1.35889 0.92337 1.05558 0.92563 1.25794 0.95407 1.00053 0.97768 1.70073 1.39364 1.29297 1.18024 0.85558 0.77661 0.80156 0.78769 1.18447 1.21094 1.19888 0.81689 0.79375 0.81465 0.98744 0.95303 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -21.39 18.54 19.01 0.35 -21.03 14 2 C 0.28 11.63 13.80 88.33 1.22 12.85 14 3 C -0.05 -1.81 5.73 -21.36 -0.12 -1.93 14 4 C -0.05 -1.17 9.76 22.54 0.22 -0.95 14 5 C -0.11 -1.86 10.03 22.23 0.22 -1.63 14 6 C -0.07 -1.51 9.82 22.35 0.22 -1.29 14 7 C -0.06 -1.95 6.31 22.29 0.14 -1.81 14 8 Cl -0.07 -2.53 27.29 -2.72 -0.07 -2.61 14 9 C -0.02 -0.62 5.11 -19.57 -0.10 -0.72 14 10 C 0.05 2.53 4.30 29.10 0.13 2.66 14 11 C -0.51 -28.70 9.09 25.60 0.23 -28.46 14 12 H 0.06 3.10 7.74 -2.91 -0.02 3.08 14 13 C 0.01 0.47 5.46 84.65 0.46 0.93 14 14 N -0.93 -56.77 13.29 21.44 0.28 -56.49 14 15 Si 0.95 45.26 29.54 68.60 2.03 47.28 14 16 H -0.26 -11.80 7.11 99.48 0.71 -11.09 14 17 H -0.28 -13.48 7.11 99.48 0.71 -12.78 14 18 H -0.27 -12.51 7.11 99.48 0.71 -11.80 14 19 H 0.17 2.57 8.06 -2.91 -0.02 2.55 14 20 H 0.19 1.31 8.06 -2.91 -0.02 1.29 14 21 H 0.17 2.52 8.06 -2.91 -0.02 2.50 14 22 H -0.01 -0.33 7.08 -2.39 -0.02 -0.35 14 23 H 0.03 1.58 6.91 -2.39 -0.02 1.56 14 24 H 0.26 15.22 8.31 -92.71 -0.77 14.45 14 Total: -1.00 -70.24 243.58 6.43 -63.81 By element: Atomic # 1 Polarization: -11.82 SS G_CDS: 1.22 Total: -10.60 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 2.62 Total: -20.37 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: 0.64 Total: -77.52 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 17 Polarization: -2.53 SS G_CDS: -0.07 Total: -2.61 kcal Total: -70.24 6.43 -63.81 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306910557.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.660 kcal (2) G-P(sol) polarization free energy of solvation -70.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds