Wall clock time and date at job start Mon Mar 30 2020 03:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39679 * 120.13849 * 128.24705 * 3 2 1 5 5 C 1.37870 * 119.86427 * 180.02562 * 4 3 2 6 6 C 1.38529 * 120.13557 * 359.97438 * 5 4 3 7 7 Cl 1.73602 * 119.86123 * 179.97438 * 6 5 4 8 8 C 1.38482 * 120.27837 * 0.02562 * 6 5 4 9 9 C 1.50703 * 119.93057 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.47064 * 279.99652 * 9 8 6 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47094 * 90.00289 * 14 12 10 16 16 H 1.48505 * 109.47195 * 210.00171 * 14 12 10 17 17 H 1.48493 * 109.47449 * 330.00136 * 14 12 10 18 18 C 1.37912 * 120.13509 * 0.24863 * 8 6 5 19 19 H 1.08003 * 120.06812 * 359.97438 * 4 3 2 20 20 H 1.08005 * 119.93261 * 179.97438 * 5 4 3 21 21 H 1.09002 * 109.47152 * 159.99745 * 9 8 6 22 22 H 1.09001 * 109.46980 * 39.99845 * 9 8 6 23 23 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 24 24 H 1.08008 * 120.06936 * 179.72243 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 0.7488 -0.9487 5 6 4.6476 0.7449 -0.9438 6 6 5.3377 0.0015 -0.0003 7 17 7.0737 0.0012 -0.0012 8 6 4.6486 -0.7423 0.9429 9 6 5.4072 -1.5487 1.9653 10 6 5.8731 -2.8393 1.3422 11 1 5.6433 -3.0540 0.3090 12 6 6.5938 -3.7456 2.0908 13 7 6.8740 -3.4839 3.3487 14 14 7.1719 -5.3450 1.3181 15 1 8.5162 -5.1477 0.7189 16 1 7.2446 -6.4003 2.3604 17 1 6.2145 -5.7585 0.2610 18 6 3.2695 -0.7511 0.9449 19 1 2.7321 1.3284 -1.6850 20 1 5.1908 1.3226 -1.6771 21 1 4.7557 -1.7681 2.8112 22 1 6.2704 -0.9790 2.3096 23 1 7.3807 -4.1217 3.8755 24 1 2.7331 -1.3351 1.6782 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307035882.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:47 Heat of formation + Delta-G solvation = 18.305825 kcal Electronic energy + Delta-G solvation = -11833.125028 eV Core-core repulsion = 9543.327032 eV Total energy + Delta-G solvation = -2289.797995 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.030 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.51632 -37.77965 -36.99783 -35.43257 -33.19011 -32.02624 -29.01624 -25.34609 -24.68070 -22.66609 -19.21960 -18.38895 -17.57029 -16.84060 -16.50133 -15.26388 -15.17898 -14.48467 -14.38591 -14.28182 -14.07051 -13.66982 -13.31712 -13.04823 -12.70914 -12.47812 -12.29005 -12.19163 -11.88075 -11.49730 -11.24240 -10.52097 -9.81742 -9.49252 -8.13230 -6.21995 -0.30100 0.40977 1.37952 1.43793 1.44903 1.54336 1.58561 1.87748 2.45495 2.83704 2.87713 3.20853 3.91365 3.96102 4.25378 4.45226 4.68502 4.95780 5.09366 5.20030 5.32458 5.44755 5.72432 5.80793 5.82351 6.22373 6.40977 6.88463 7.44900 8.96868 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.027446 B = 0.009143 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.949433 B = 3061.794052 C = 3695.689276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.287 3.713 3 C -0.032 4.032 4 C -0.058 4.058 5 C -0.104 4.104 6 C -0.018 4.018 7 Cl -0.066 7.066 8 C -0.060 4.060 9 C 0.054 3.946 10 C -0.508 4.508 11 H 0.056 0.944 12 C 0.010 3.990 13 N -0.928 5.928 14 Si 0.951 3.049 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.266 1.266 18 C -0.068 4.068 19 H 0.175 0.825 20 H 0.171 0.829 21 H 0.009 0.991 22 H 0.022 0.978 23 H 0.262 0.738 24 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.644 8.449 -8.879 12.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.028 4.028 3 C -0.036 4.036 4 C -0.079 4.079 5 C -0.122 4.122 6 C -0.045 4.045 7 Cl -0.037 7.037 8 C -0.061 4.061 9 C 0.017 3.983 10 C -0.546 4.546 11 H 0.074 0.926 12 C -0.188 4.188 13 N -0.569 5.569 14 Si 0.776 3.224 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.190 1.190 18 C -0.088 4.088 19 H 0.193 0.807 20 H 0.189 0.811 21 H 0.028 0.972 22 H 0.040 0.960 23 H 0.071 0.929 24 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.171 8.376 -8.730 12.798 hybrid contribution 1.112 -1.138 0.279 1.615 sum -3.060 7.238 -8.451 11.540 Atomic orbital electron populations 1.81232 1.12878 1.09925 1.09452 1.25647 0.92423 0.92331 0.92389 1.16020 0.83705 1.03463 1.00400 1.21306 0.92957 0.96807 0.96782 1.21237 0.93928 0.99021 0.98042 1.21327 0.85180 0.99876 0.98166 1.98365 1.10112 1.97417 1.97823 1.20167 0.93662 0.95371 0.96927 1.18169 0.94460 0.93557 0.92129 1.21200 1.33678 1.02352 0.97378 0.92604 1.25720 0.96349 1.01549 0.95231 1.70057 1.40757 1.37435 1.08642 0.85652 0.78945 0.79489 0.78265 1.20063 1.21109 1.19020 1.21025 0.92558 0.97301 0.97967 0.80745 0.81145 0.97235 0.96023 0.92883 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.10 18.54 19.00 0.35 -13.75 14 2 C 0.29 7.79 15.33 88.33 1.35 9.15 14 3 C -0.03 -0.84 5.73 -21.35 -0.12 -0.96 14 4 C -0.06 -1.18 9.75 22.53 0.22 -0.96 14 5 C -0.10 -2.37 9.81 22.25 0.22 -2.15 14 6 C -0.02 -0.58 6.31 22.40 0.14 -0.44 14 7 Cl -0.07 -2.31 27.29 -2.72 -0.07 -2.38 14 8 C -0.06 -2.28 5.07 -19.88 -0.10 -2.38 14 9 C 0.05 2.59 4.56 29.10 0.13 2.72 14 10 C -0.51 -26.69 8.85 25.60 0.23 -26.46 14 11 H 0.06 2.89 7.74 -2.91 -0.02 2.87 14 12 C 0.01 0.52 5.46 84.66 0.46 0.99 14 13 N -0.93 -53.74 13.29 21.45 0.28 -53.46 14 14 Si 0.95 42.92 29.54 68.60 2.03 44.94 14 15 H -0.27 -12.13 7.11 99.48 0.71 -11.42 14 16 H -0.29 -12.74 7.11 99.48 0.71 -12.03 14 17 H -0.27 -11.57 7.11 99.48 0.71 -10.86 14 18 C -0.07 -2.19 9.37 22.53 0.21 -1.98 14 19 H 0.18 2.17 8.06 -2.91 -0.02 2.15 14 20 H 0.17 2.74 8.06 -2.91 -0.02 2.71 14 21 H 0.01 0.48 8.00 -2.39 -0.02 0.46 14 22 H 0.02 1.12 7.34 -2.39 -0.02 1.10 14 23 H 0.26 14.44 8.31 -92.71 -0.77 13.67 14 24 H 0.13 4.28 8.04 -2.91 -0.02 4.26 14 Total: -1.00 -60.77 245.77 6.55 -54.22 By element: Atomic # 1 Polarization: -8.32 SS G_CDS: 1.22 Total: -7.10 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 2.74 Total: -22.48 kcal Atomic # 7 Polarization: -67.85 SS G_CDS: 0.64 Total: -67.21 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -0.07 Total: -2.38 kcal Total: -60.77 6.55 -54.22 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307035882.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.526 kcal (2) G-P(sol) polarization free energy of solvation -60.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds