Wall clock time and date at job start Mon Mar 30 2020 03:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86799 * 119.99996 * 2 1 4 4 H 1.48496 * 109.47016 * 83.55221 * 3 2 1 5 5 H 1.48498 * 109.46889 * 203.55309 * 3 2 1 6 6 H 1.48502 * 109.46826 * 323.55174 * 3 2 1 7 7 C 1.39965 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99738 * 24.19619 * 7 2 1 9 9 C 1.40655 * 120.00052 * 204.19318 * 7 2 1 10 10 C 1.40878 * 120.71013 * 25.48230 * 9 7 2 11 11 C 1.37464 * 120.03023 * 179.97438 * 10 9 7 12 12 C 1.38696 * 121.45215 * 0.02562 * 11 10 9 13 13 C 1.38319 * 121.05165 * 0.04814 * 12 11 10 14 14 O 1.35380 * 133.83071 * 179.97438 * 13 12 11 15 15 C 1.34510 * 107.93409 * 179.22503 * 14 13 12 16 16 S 1.76196 * 125.05940 * 180.10670 * 15 14 13 17 17 N 1.31429 * 109.87844 * 0.64343 * 15 14 13 18 18 C 1.34380 * 108.87053 * 359.44226 * 17 15 14 19 19 H 0.97001 * 120.00080 * 173.05416 * 1 2 3 20 20 H 1.08000 * 119.98632 * 0.02562 * 10 9 7 21 21 H 1.08000 * 119.27187 * 180.02562 * 11 10 9 22 22 H 1.07994 * 119.47408 * 180.02562 * 12 11 10 23 23 H 1.40995 * 100.00333 * 270.61369 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3540 2.1250 1.3912 5 1 3.6016 1.4046 -0.5595 6 1 1.5148 2.6095 -0.8318 7 6 2.0085 -1.2122 0.0005 8 1 1.5396 -2.1065 -0.3824 9 6 3.3224 -1.2655 0.4998 10 6 3.7679 -0.3298 1.4541 11 6 5.0548 -0.3952 1.9329 12 6 5.9405 -1.3695 1.4971 13 6 5.5589 -2.3132 0.5606 14 8 6.1905 -3.3522 -0.0346 15 6 5.3159 -3.9479 -0.8650 16 16 5.6679 -5.3545 -1.8661 17 7 4.1632 -3.3177 -0.8269 18 6 4.2543 -2.2973 0.0428 19 1 -0.4850 -0.8339 -0.1016 20 1 3.0979 0.4387 1.8102 21 1 5.3834 0.3280 2.6646 22 1 6.9442 -1.3915 1.8950 23 1 6.1397 -4.7145 -3.0304 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307140935.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:14 Heat of formation + Delta-G solvation = 28.279910 kcal Electronic energy + Delta-G solvation = -12341.530984 eV Core-core repulsion = 10054.209204 eV Total energy + Delta-G solvation = -2287.321780 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.025 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.92190 -36.85043 -34.11821 -33.62257 -30.31054 -28.72688 -25.15344 -22.92410 -22.00425 -20.36795 -18.70355 -17.78964 -16.75452 -16.07289 -15.66757 -14.87738 -14.25619 -13.87772 -12.99236 -12.89515 -12.62327 -11.51479 -11.39553 -11.29925 -11.15381 -10.64744 -10.40798 -10.19685 -9.87019 -9.62889 -9.27343 -8.13045 -8.05396 -7.80842 -7.49600 -4.90836 1.29972 1.61732 2.41153 2.56966 2.97589 3.11307 3.34911 3.47928 3.69644 3.94283 4.13125 5.02549 5.54514 5.77993 5.95707 6.23958 6.34612 6.77584 6.84597 6.99412 7.15909 7.26423 7.44059 7.56658 7.87499 8.01650 8.16547 8.60730 9.42674 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.036432 B = 0.009875 C = 0.008238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.372785 B = 2834.689348 C = 3397.872027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.038 3.962 3 Si 1.076 2.924 4 H -0.268 1.268 5 H -0.257 1.257 6 H -0.283 1.283 7 C -0.432 4.432 8 H 0.094 0.906 9 C 0.148 3.852 10 C -0.288 4.288 11 C -0.008 4.008 12 C -0.277 4.277 13 C 0.092 3.908 14 O -0.213 6.213 15 C 0.076 3.924 16 S 0.008 5.992 17 N -0.375 5.375 18 C -0.082 4.082 19 H 0.297 0.703 20 H 0.116 0.884 21 H 0.112 0.888 22 H 0.104 0.896 23 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.775 -0.797 -0.618 5.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.188 4.188 3 Si 0.899 3.101 4 H -0.194 1.194 5 H -0.181 1.181 6 H -0.210 1.210 7 C -0.457 4.457 8 H 0.112 0.888 9 C 0.143 3.857 10 C -0.307 4.307 11 C -0.026 4.026 12 C -0.298 4.298 13 C 0.038 3.962 14 O -0.106 6.106 15 C -0.236 4.236 16 S 0.160 5.840 17 N -0.106 5.106 18 C -0.206 4.206 19 H 0.110 0.890 20 H 0.134 0.866 21 H 0.130 0.870 22 H 0.122 0.878 23 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.049 -0.341 -1.295 5.224 hybrid contribution 0.767 -0.445 0.143 0.898 sum 5.816 -0.786 -1.152 5.981 Atomic orbital electron populations 1.70518 1.08226 1.34557 1.24877 1.27820 0.95524 1.05281 0.90159 0.83549 0.76158 0.71922 0.78494 1.19372 1.18101 1.21004 1.21028 0.96994 0.98040 1.29668 0.88789 1.17876 0.90472 0.87763 0.89586 1.20702 0.97549 1.06145 1.06321 1.20354 0.92421 0.94415 0.95444 1.18796 1.01268 1.01715 1.07975 1.20400 0.91964 0.88257 0.95603 1.84637 1.39994 1.37432 1.48547 1.26082 0.87422 1.04985 1.05068 1.86435 1.85159 1.00265 1.12170 1.70350 1.21179 1.03949 1.15075 1.20757 0.94408 1.01805 1.03646 0.89033 0.86601 0.86993 0.87751 0.95154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.39 13.65 55.55 0.76 -17.64 14 2 C 0.04 0.91 5.34 -17.32 -0.09 0.82 14 3 Si 1.08 21.96 25.00 -169.99 -4.25 17.71 14 4 H -0.27 -5.05 6.66 56.52 0.38 -4.68 14 5 H -0.26 -5.35 7.02 56.52 0.40 -4.95 14 6 H -0.28 -5.55 7.11 56.52 0.40 -5.15 14 7 C -0.43 -11.09 9.43 -38.02 -0.36 -11.45 14 8 H 0.09 2.55 8.06 -52.49 -0.42 2.12 14 9 C 0.15 3.77 5.32 -104.72 -0.56 3.22 14 10 C -0.29 -6.57 7.38 -38.87 -0.29 -6.85 14 11 C -0.01 -0.16 9.95 -39.69 -0.39 -0.55 14 12 C -0.28 -6.03 10.01 -39.38 -0.39 -6.43 14 13 C 0.09 2.23 7.42 -38.75 -0.29 1.95 14 14 O -0.21 -4.99 10.81 2.07 0.02 -4.96 14 15 C 0.08 1.71 8.61 52.59 0.45 2.16 14 16 S 0.01 0.13 26.28 -107.50 -2.83 -2.70 14 17 N -0.38 -9.49 11.33 -9.91 -0.11 -9.60 14 18 C -0.08 -2.13 7.20 -82.68 -0.60 -2.73 14 19 H 0.30 6.94 8.73 -40.82 -0.36 6.59 14 20 H 0.12 2.49 4.65 -52.49 -0.24 2.24 14 21 H 0.11 1.86 8.06 -52.49 -0.42 1.44 14 22 H 0.10 2.00 8.06 -52.49 -0.42 1.58 14 23 H 0.08 1.21 9.55 96.90 0.93 2.13 14 LS Contribution 225.62 15.07 3.40 3.40 Total: -1.00 -27.05 225.62 -5.29 -32.34 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: 0.23 Total: 1.32 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -2.51 Total: -19.87 kcal Atomic # 7 Polarization: -27.88 SS G_CDS: 0.65 Total: -27.24 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: 0.02 Total: -4.96 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.25 Total: 17.71 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -2.83 Total: -2.70 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -27.05 -5.29 -32.34 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307140935.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.616 kcal (2) G-P(sol) polarization free energy of solvation -27.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds