Wall clock time and date at job start Mon Mar 30 2020 03:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30552 * 1 3 3 Si 1.86801 * 119.99853 * 2 1 4 4 H 1.48501 * 109.47284 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47350 * 300.00373 * 3 2 1 6 6 H 1.48505 * 109.46888 * 60.00447 * 3 2 1 7 7 C 1.40413 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00006 * 179.97438 * 7 2 1 9 9 C 1.40006 * 119.99764 * 359.97438 * 7 2 1 10 10 N 1.32370 * 125.15185 * 0.02562 * 9 7 2 11 11 C 1.34183 * 108.91055 * 179.97438 * 10 9 7 12 12 C 1.40534 * 133.50272 * 180.02562 * 11 10 9 13 13 C 1.36451 * 119.94201 * 179.97438 * 12 11 10 14 14 C 1.38882 * 120.72019 * 359.94873 * 13 12 11 15 15 C 1.38755 * 120.50443 * 0.04681 * 14 13 12 16 16 S 1.76202 * 120.16070 * 179.97438 * 15 14 13 17 17 C 1.39174 * 119.67345 * 359.97438 * 15 14 13 18 18 O 1.35074 * 125.14888 * 180.02562 * 9 7 2 19 19 H 0.97000 * 119.99871 * 359.97438 * 1 2 3 20 20 H 1.08000 * 120.03111 * 359.95098 * 12 11 10 21 21 H 1.07998 * 119.64144 * 179.97438 * 13 12 11 22 22 H 1.07995 * 119.74572 * 180.02562 * 14 13 12 23 23 H 1.34500 * 103.00205 * 270.02816 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2395 1.6178 0.0000 4 1 3.6995 1.3465 0.0006 5 1 1.8807 2.3965 -1.2124 6 1 1.8807 2.3964 1.2126 7 6 2.0076 -1.2160 -0.0005 8 1 3.0877 -1.2159 -0.0010 9 6 1.3076 -2.4285 -0.0005 10 7 -0.0107 -2.5473 -0.0005 11 6 -0.3299 -3.8507 -0.0011 12 6 -1.5500 -4.5479 -0.0018 13 6 -1.5547 -5.9124 -0.0028 14 6 -0.3633 -6.6260 -0.0042 15 6 0.8552 -5.9623 -0.0036 16 16 2.3614 -6.8767 -0.0047 17 6 0.8818 -4.5708 -0.0022 18 8 1.8753 -3.6541 -0.0005 19 1 -0.4850 0.8401 0.0004 20 1 -2.4832 -4.0043 -0.0012 21 1 -2.4952 -6.4433 -0.0030 22 1 -0.3854 -7.7057 -0.0054 23 1 2.6199 -7.0356 1.3056 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307275043.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:09 Heat of formation + Delta-G solvation = 27.002642 kcal Electronic energy + Delta-G solvation = -12270.008247 eV Core-core repulsion = 9982.631080 eV Total energy + Delta-G solvation = -2287.377167 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.025 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.43831 -36.84990 -34.28494 -32.67433 -29.80535 -29.20438 -26.42294 -22.32200 -21.52541 -20.85410 -17.71727 -17.36320 -16.75152 -15.90042 -15.20903 -15.00225 -14.45717 -13.63576 -13.21745 -12.67599 -11.90520 -11.80398 -11.59666 -11.49340 -11.05989 -10.92270 -10.54725 -10.32662 -9.99543 -9.40868 -8.48531 -7.94265 -7.66464 -7.46935 -7.01590 -5.00666 1.48973 2.18919 2.28743 2.83403 2.89271 2.96737 3.23655 3.60530 3.77858 4.16891 4.56972 5.10862 5.46175 5.79122 5.87929 6.05636 6.23191 6.63977 6.72622 6.81197 7.11659 7.20504 7.36367 7.61721 7.84979 8.12261 8.37978 9.58524 9.88178 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.044882 B = 0.008569 C = 0.007224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.705235 B = 3266.928920 C = 3875.187999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.701 5.701 2 C 0.067 3.933 3 Si 0.935 3.065 4 H -0.255 1.255 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.401 4.401 8 H 0.103 0.897 9 C 0.350 3.650 10 N -0.546 5.546 11 C 0.099 3.901 12 C -0.112 4.112 13 C -0.113 4.113 14 C -0.136 4.136 15 C -0.060 4.060 16 S -0.145 6.145 17 C -0.022 4.022 18 O -0.242 6.242 19 H 0.286 0.714 20 H 0.120 0.880 21 H 0.120 0.880 22 H 0.126 0.874 23 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.144 -3.868 0.430 3.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.323 5.323 2 C -0.162 4.162 3 Si 0.757 3.243 4 H -0.178 1.178 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.121 0.879 9 C 0.171 3.829 10 N -0.278 5.278 11 C -0.027 4.027 12 C -0.134 4.134 13 C -0.135 4.135 14 C -0.159 4.159 15 C -0.173 4.173 16 S 0.012 5.988 17 C -0.078 4.078 18 O -0.142 6.142 19 H 0.098 0.902 20 H 0.138 0.862 21 H 0.138 0.862 22 H 0.144 0.856 23 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 0.400 -3.623 0.204 3.651 hybrid contribution 0.038 0.552 1.063 1.198 sum 0.438 -3.072 1.267 3.351 Atomic orbital electron populations 1.69965 1.07513 1.29584 1.25209 1.26054 0.95206 1.01380 0.93515 0.85811 0.80530 0.78903 0.79046 1.17819 1.19184 1.19265 1.18629 0.95205 0.85683 1.43895 0.87871 1.22571 0.86657 0.83106 0.90610 1.71590 1.10450 1.12122 1.33686 1.20481 0.93156 0.91315 0.97732 1.19964 0.95405 0.93136 1.04888 1.20402 0.97085 0.93503 1.02486 1.20833 0.90170 0.98725 1.06184 1.19568 0.94974 0.89419 1.13336 1.85581 1.30058 1.72008 1.11166 1.20290 0.88549 0.90816 1.08121 1.84711 1.34780 1.16241 1.78428 0.90244 0.86246 0.86244 0.85642 0.97056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.81 11.84 55.57 0.66 -17.16 14 2 C 0.07 1.60 5.50 -17.28 -0.10 1.50 14 3 Si 0.94 17.13 29.56 -169.99 -5.03 12.11 14 4 H -0.25 -4.54 7.11 56.52 0.40 -4.14 14 5 H -0.27 -4.78 7.11 56.52 0.40 -4.38 14 6 H -0.27 -4.80 7.11 56.52 0.40 -4.40 14 7 C -0.40 -10.34 9.46 -38.10 -0.36 -10.70 14 8 H 0.10 2.43 7.85 -52.48 -0.41 2.02 14 9 C 0.35 9.79 7.69 -16.66 -0.13 9.66 14 10 N -0.55 -15.54 9.37 -11.08 -0.10 -15.64 14 11 C 0.10 2.54 7.22 -84.95 -0.61 1.93 14 12 C -0.11 -2.41 10.07 -39.36 -0.40 -2.81 14 13 C -0.11 -2.05 9.96 -39.99 -0.40 -2.45 14 14 C -0.14 -2.52 9.79 -39.15 -0.38 -2.90 14 15 C -0.06 -1.29 6.11 -39.04 -0.24 -1.53 14 16 S -0.15 -2.72 25.79 -107.50 -2.77 -5.49 14 17 C -0.02 -0.56 7.18 -38.21 -0.27 -0.84 14 18 O -0.24 -6.55 10.83 1.09 0.01 -6.54 14 19 H 0.29 6.40 8.29 -40.82 -0.34 6.06 14 20 H 0.12 2.36 8.06 -52.49 -0.42 1.93 14 21 H 0.12 1.68 8.06 -52.49 -0.42 1.26 14 22 H 0.13 1.92 8.06 -52.49 -0.42 1.50 14 23 H 0.07 1.14 9.07 97.61 0.89 2.03 14 LS Contribution 231.08 15.07 3.48 3.48 Total: -1.00 -28.93 231.08 -6.57 -35.50 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: 0.07 Total: 1.87 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -2.89 Total: -8.13 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.55 Total: -32.80 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: 0.01 Total: -6.54 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.11 kcal Atomic # 16 Polarization: -2.72 SS G_CDS: -2.77 Total: -5.49 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -28.93 -6.57 -35.50 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307275043.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.500 kcal (2) G-P(sol) polarization free energy of solvation -28.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds