Wall clock time and date at job start Mon Mar 30 2020 03:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39675 * 120.15596 * 260.27379 * 3 2 1 5 5 C 1.37900 * 119.85414 * 179.76880 * 4 3 2 6 6 C 1.38415 * 120.18471 * 0.50997 * 5 4 3 7 7 C 1.50707 * 119.83587 * 179.71699 * 6 5 4 8 8 C 1.50698 * 109.47278 * 270.02832 * 7 6 5 9 9 H 1.07999 * 119.99973 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99513 * 180.02562 * 8 7 6 11 11 N 1.31506 * 120.00484 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99445 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47378 * 90.00118 * 12 10 8 14 14 H 1.48508 * 109.46776 * 209.99638 * 12 10 8 15 15 H 1.48504 * 109.47403 * 329.99385 * 12 10 8 16 16 C 1.38282 * 120.33167 * 359.74741 * 6 5 4 17 17 C 1.38139 * 120.13176 * 359.97438 * 16 6 5 18 18 Cl 1.73606 * 120.09126 * 179.97438 * 17 16 6 19 19 H 1.07999 * 120.07436 * 0.02858 * 4 3 2 20 20 H 1.08000 * 119.90450 * 180.25862 * 5 4 3 21 21 H 1.09002 * 109.46800 * 30.02874 * 7 6 5 22 22 H 1.09001 * 109.46771 * 150.02279 * 7 6 5 23 23 H 0.97000 * 120.00335 * 179.97438 * 11 10 8 24 24 H 1.07996 * 119.93387 * 180.02562 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 0.2050 1.1904 5 6 4.6485 0.1996 1.1840 6 6 5.3383 0.0029 0.0002 7 6 6.8453 0.0049 0.0013 8 6 7.3460 1.4071 -0.2315 9 1 6.6433 2.2159 -0.3672 10 6 8.7013 1.6572 -0.2724 11 7 9.5570 0.6723 -0.1078 12 14 9.3219 3.3954 -0.5603 13 1 9.4858 4.0850 0.7446 14 1 10.6304 3.3441 -1.2608 15 1 8.3431 4.1389 -1.3936 16 6 4.6515 -0.1948 -1.1836 17 6 3.2701 -0.1977 -1.1917 18 17 2.4089 -0.4454 -2.6786 19 1 2.7332 0.3627 2.1144 20 1 5.1918 0.3534 2.1047 21 1 7.2084 -0.3555 0.9638 22 1 7.2100 -0.6476 -0.7920 23 1 10.5105 0.8482 -0.1369 24 1 5.1961 -0.3481 -2.1035 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307356454.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:10 Heat of formation + Delta-G solvation = 16.721577 kcal Electronic energy + Delta-G solvation = -11677.028194 eV Core-core repulsion = 9387.161500 eV Total energy + Delta-G solvation = -2289.866694 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.030 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.56252 -37.70493 -37.55909 -35.39023 -33.25996 -31.81887 -29.43235 -25.81025 -23.73809 -22.80687 -20.03490 -18.46388 -17.06213 -16.86352 -16.24699 -15.52132 -15.36489 -14.81133 -14.43890 -14.12902 -14.02361 -13.74479 -13.34963 -13.19636 -12.65986 -12.53879 -12.37656 -12.19819 -12.10812 -11.49228 -11.46343 -10.55350 -9.85997 -9.60587 -8.17003 -6.28258 -0.29125 0.26361 0.95580 1.45900 1.47630 1.55394 1.57316 1.91711 2.44740 2.77479 2.82358 3.16807 3.81217 4.07906 4.34633 4.40027 4.51150 4.85390 5.07422 5.25981 5.29719 5.41509 5.76020 5.78604 5.88988 6.18370 6.37097 6.84786 7.40683 8.92521 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.040467 B = 0.006811 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.748789 B = 4109.756174 C = 4331.211445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.281 3.719 3 C -0.056 4.056 4 C -0.037 4.037 5 C -0.119 4.119 6 C -0.008 4.008 7 C 0.049 3.951 8 C -0.527 4.527 9 H 0.060 0.940 10 C 0.010 3.990 11 N -0.926 5.926 12 Si 0.958 3.042 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.267 1.267 16 C -0.119 4.119 17 C 0.010 3.990 18 Cl -0.063 7.063 19 H 0.172 0.828 20 H 0.150 0.850 21 H 0.022 0.978 22 H 0.014 0.986 23 H 0.265 0.735 24 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.305 -0.997 0.662 9.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.033 4.033 3 C -0.060 4.060 4 C -0.057 4.057 5 C -0.137 4.137 6 C -0.009 4.009 7 C 0.012 3.988 8 C -0.565 4.565 9 H 0.078 0.922 10 C -0.189 4.189 11 N -0.566 5.566 12 Si 0.783 3.217 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.191 1.191 16 C -0.138 4.138 17 C -0.019 4.019 18 Cl -0.034 7.034 19 H 0.189 0.811 20 H 0.167 0.833 21 H 0.041 0.959 22 H 0.032 0.968 23 H 0.074 0.926 24 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.977 -1.061 0.525 11.041 hybrid contribution 1.142 0.643 -0.514 1.408 sum -9.835 -0.418 0.011 9.844 Atomic orbital electron populations 1.81193 1.12518 1.10372 1.08248 1.25458 0.92316 0.92696 0.92858 1.15757 0.83988 1.12083 0.94165 1.21378 0.93503 0.94348 0.96515 1.21298 0.93590 0.99979 0.98793 1.20651 0.97467 0.90129 0.92700 1.18256 0.86429 0.96613 0.97483 1.21348 0.91768 0.93961 1.49408 0.92159 1.25794 0.97287 1.00915 0.94925 1.70045 1.02569 1.33299 1.50702 0.85548 0.77631 0.79981 0.78529 1.19781 1.21104 1.19136 1.20909 0.90903 1.02324 0.99665 1.20901 0.92169 1.02465 0.86394 1.98372 1.76701 1.94938 1.33406 0.81070 0.83270 0.95938 0.96785 0.92627 0.84489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -13.69 18.54 19.00 0.35 -13.34 14 2 C 0.28 7.80 14.39 88.33 1.27 9.08 14 3 C -0.06 -1.48 5.74 -21.32 -0.12 -1.61 14 4 C -0.04 -0.88 9.76 22.54 0.22 -0.66 14 5 C -0.12 -3.40 9.68 22.23 0.22 -3.19 14 6 C -0.01 -0.30 5.08 -19.81 -0.10 -0.40 14 7 C 0.05 2.24 5.09 29.10 0.15 2.39 14 8 C -0.53 -26.69 9.09 25.60 0.23 -26.46 14 9 H 0.06 2.99 7.74 -2.91 -0.02 2.96 14 10 C 0.01 0.50 5.46 84.66 0.46 0.97 14 11 N -0.93 -51.69 13.29 21.45 0.28 -51.40 14 12 Si 0.96 41.21 29.54 68.60 2.03 43.23 14 13 H -0.27 -11.35 7.11 99.48 0.71 -10.65 14 14 H -0.29 -12.19 7.11 99.48 0.71 -11.48 14 15 H -0.27 -11.15 7.11 99.48 0.71 -10.44 14 16 C -0.12 -3.90 9.46 22.26 0.21 -3.69 14 17 C 0.01 0.29 6.35 22.61 0.14 0.43 14 18 Cl -0.06 -1.74 28.03 -2.72 -0.08 -1.82 14 19 H 0.17 2.78 8.06 -2.91 -0.02 2.76 14 20 H 0.15 3.93 8.06 -2.91 -0.02 3.90 14 21 H 0.02 1.07 8.08 -2.39 -0.02 1.05 14 22 H 0.01 0.68 8.08 -2.39 -0.02 0.66 14 23 H 0.26 14.01 8.31 -92.71 -0.77 13.24 14 24 H 0.14 4.50 8.06 -2.91 -0.02 4.48 14 Total: -1.00 -56.45 247.18 6.49 -49.96 By element: Atomic # 1 Polarization: -4.73 SS G_CDS: 1.22 Total: -3.51 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: 2.68 Total: -23.13 kcal Atomic # 7 Polarization: -65.38 SS G_CDS: 0.64 Total: -64.74 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.23 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.08 Total: -1.82 kcal Total: -56.45 6.49 -49.96 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307356454.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.685 kcal (2) G-P(sol) polarization free energy of solvation -56.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds