Wall clock time and date at job start Mon Mar 30 2020 03:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86803 * 119.99933 * 2 1 4 4 H 1.48497 * 109.47368 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47355 * 300.00272 * 3 2 1 6 6 H 1.48505 * 109.46860 * 60.00162 * 3 2 1 7 7 C 1.38778 * 120.00464 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00122 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99627 * 359.97438 * 7 2 1 10 10 C 1.76198 * 99.99922 * 180.02562 * 9 7 2 11 11 N 1.31187 * 125.10938 * 0.02562 * 10 9 7 12 12 C 1.34964 * 109.86389 * 179.97438 * 11 10 9 13 13 N 1.33218 * 133.08330 * 180.02562 * 12 11 10 14 14 C 1.31587 * 121.53365 * 179.97438 * 13 12 11 15 15 C 1.38522 * 121.41373 * 0.02562 * 14 13 12 16 16 C 1.38577 * 119.46675 * 0.02562 * 15 14 13 17 17 C 1.38739 * 118.22885 * 359.97438 * 16 15 14 18 18 N 1.36660 * 125.10830 * 179.97438 * 10 9 7 19 19 H 0.96992 * 126.49458 * 0.04334 * 18 10 9 20 20 H 0.96993 * 120.00128 * 0.02562 * 1 2 3 21 21 H 1.08001 * 119.28899 * 179.97438 * 14 13 12 22 22 H 1.08003 * 120.26757 * 180.02562 * 15 14 13 23 23 H 1.07998 * 120.88695 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3465 0.0006 5 1 1.8908 2.3966 -1.2125 6 1 1.8908 2.3964 1.2126 7 6 2.0095 -1.2018 -0.0005 8 1 3.0894 -1.2017 -0.0001 9 16 1.1285 -2.7278 -0.0005 10 6 2.4783 -3.8603 -0.0005 11 7 3.7461 -3.5231 -0.0001 12 6 4.5155 -4.6320 0.0004 13 7 5.8337 -4.8249 0.0013 14 6 6.3522 -6.0343 0.0020 15 6 5.5502 -7.1637 0.0013 16 6 4.1718 -7.0210 -0.0008 17 6 3.6450 -5.7375 -0.0015 18 7 2.3618 -5.2219 0.0000 19 1 1.5358 -5.7302 -0.0002 20 1 -0.4850 0.8400 -0.0004 21 1 7.4261 -6.1488 0.0024 22 1 5.9955 -8.1477 0.0023 23 1 3.5248 -7.8858 -0.0019 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307699885.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:14 Heat of formation + Delta-G solvation = 75.792722 kcal Electronic energy + Delta-G solvation = -11887.888275 eV Core-core repulsion = 9634.919556 eV Total energy + Delta-G solvation = -2252.968719 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.032 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.52555 -37.68149 -33.07277 -32.73190 -30.67140 -29.19949 -25.79262 -23.66675 -22.56767 -21.16528 -18.53178 -17.59428 -16.82598 -16.04952 -15.06760 -14.99113 -14.79278 -14.01988 -13.19108 -12.93478 -12.37454 -12.34102 -11.34929 -11.19195 -11.10214 -10.67058 -10.22396 -10.02779 -9.46417 -9.09651 -8.60331 -8.49159 -8.42404 -6.87932 -6.55620 -4.30104 1.19133 1.71367 2.36022 3.09999 3.21004 3.21624 3.32805 3.47377 3.97623 4.41459 4.51731 4.90363 4.92297 5.02207 5.23884 5.31216 5.58025 5.75886 6.18143 6.40526 6.55902 6.99839 7.51303 7.60865 8.18871 8.36409 8.65099 8.98170 10.52684 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.051816 B = 0.007612 C = 0.006653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.242229 B = 3677.529979 C = 4207.930163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.076 3.924 3 Si 0.934 3.066 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.534 4.534 8 H 0.112 0.888 9 S 0.155 5.845 10 C 0.284 3.716 11 N -0.498 5.498 12 C 0.275 3.725 13 N -0.462 5.462 14 C 0.111 3.889 15 C -0.192 4.192 16 C -0.062 4.062 17 C -0.018 4.018 18 N -0.598 5.598 19 H 0.421 0.579 20 H 0.275 0.725 21 H 0.155 0.845 22 H 0.134 0.866 23 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.793 -11.557 -0.002 12.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.134 4.134 3 Si 0.759 3.241 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.682 4.682 8 H 0.130 0.870 9 S 0.391 5.609 10 C -0.088 4.088 11 N -0.226 5.226 12 C 0.028 3.972 13 N -0.174 5.174 14 C -0.058 4.058 15 C -0.216 4.216 16 C -0.092 4.092 17 C -0.134 4.134 18 N -0.215 5.215 19 H 0.260 0.740 20 H 0.085 0.915 21 H 0.173 0.827 22 H 0.152 0.848 23 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.219 -9.897 0.000 10.408 hybrid contribution 0.450 -0.760 -0.002 0.883 sum 3.669 -10.658 -0.001 11.271 Atomic orbital electron populations 1.69909 1.06171 1.28645 1.46399 1.25134 0.95206 0.99855 0.93205 0.85836 0.80292 0.80007 0.77956 1.18655 1.20286 1.20293 1.23391 0.97592 0.88639 1.58618 0.86963 1.83590 0.97158 0.96223 1.83923 1.27372 0.99577 0.85250 0.96589 1.70764 0.98751 1.25746 1.27362 1.19796 0.89337 0.88731 0.99337 1.66875 1.11026 1.25343 1.14131 1.22486 0.99929 0.86561 0.96829 1.21656 0.92982 1.00106 1.06835 1.20270 0.95323 0.93221 1.00419 1.19842 0.86915 0.97115 1.09480 1.42910 1.06460 1.06466 1.65616 0.73958 0.91489 0.82734 0.84811 0.85651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.92 13.22 55.49 0.73 -23.19 14 2 C 0.08 2.02 5.49 -17.47 -0.10 1.93 14 3 Si 0.93 21.08 29.55 -169.99 -5.02 16.05 14 4 H -0.26 -6.02 7.11 56.52 0.40 -5.62 14 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 14 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 14 7 C -0.53 -14.68 9.35 30.93 0.29 -14.39 14 8 H 0.11 3.24 6.85 -52.49 -0.36 2.88 14 9 S 0.16 3.72 21.89 -107.50 -2.35 1.37 14 10 C 0.28 6.40 8.19 -88.31 -0.72 5.68 14 11 N -0.50 -12.50 9.93 -12.53 -0.12 -12.62 14 12 C 0.28 6.16 8.35 -157.51 -1.31 4.84 14 13 N -0.46 -9.48 10.42 -12.79 -0.13 -9.61 14 14 C 0.11 1.68 11.15 -17.55 -0.20 1.48 14 15 C -0.19 -2.47 10.10 -39.35 -0.40 -2.87 14 16 C -0.06 -0.89 10.19 -39.27 -0.40 -1.29 14 17 C -0.02 -0.34 7.31 -83.83 -0.61 -0.95 14 18 N -0.60 -10.81 6.29 -10.51 -0.07 -10.88 14 19 H 0.42 5.85 8.96 -40.82 -0.37 5.48 14 20 H 0.28 6.98 8.31 -40.82 -0.34 6.64 14 21 H 0.16 1.73 8.06 -52.49 -0.42 1.30 14 22 H 0.13 1.18 8.06 -52.48 -0.42 0.76 14 23 H 0.13 1.33 8.06 -52.49 -0.42 0.91 14 LS Contribution 231.05 15.07 3.48 3.48 Total: -1.00 -31.92 231.05 -8.06 -39.98 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -1.13 Total: 0.98 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -3.45 Total: -5.57 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 0.41 Total: -56.30 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -2.35 Total: 1.37 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -31.92 -8.06 -39.98 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307699885.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.776 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds