Wall clock time and date at job start Mon Mar 30 2020 03:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86803 * 119.99933 * 2 1 4 4 H 1.48497 * 109.47368 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47355 * 300.00272 * 3 2 1 6 6 H 1.48505 * 109.46860 * 60.00162 * 3 2 1 7 7 C 1.38778 * 120.00464 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00122 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99627 * 359.97438 * 7 2 1 10 10 C 1.76198 * 99.99922 * 180.02562 * 9 7 2 11 11 N 1.31187 * 125.10938 * 0.02562 * 10 9 7 12 12 C 1.34964 * 109.86389 * 179.97438 * 11 10 9 13 13 N 1.33218 * 133.08330 * 180.02562 * 12 11 10 14 14 C 1.31587 * 121.53365 * 179.97438 * 13 12 11 15 15 C 1.38522 * 121.41373 * 0.02562 * 14 13 12 16 16 C 1.38577 * 119.46675 * 0.02562 * 15 14 13 17 17 C 1.38739 * 118.22885 * 359.97438 * 16 15 14 18 18 N 1.36660 * 125.10830 * 179.97438 * 10 9 7 19 19 H 0.96992 * 126.49458 * 0.04334 * 18 10 9 20 20 H 0.96993 * 120.00128 * 0.02562 * 1 2 3 21 21 H 1.08001 * 119.28899 * 179.97438 * 14 13 12 22 22 H 1.08003 * 120.26757 * 180.02562 * 15 14 13 23 23 H 1.07998 * 120.88695 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3465 0.0006 5 1 1.8908 2.3966 -1.2125 6 1 1.8908 2.3964 1.2126 7 6 2.0095 -1.2018 -0.0005 8 1 3.0894 -1.2017 -0.0001 9 16 1.1285 -2.7278 -0.0005 10 6 2.4783 -3.8603 -0.0005 11 7 3.7461 -3.5231 -0.0001 12 6 4.5155 -4.6320 0.0004 13 7 5.8337 -4.8249 0.0013 14 6 6.3522 -6.0343 0.0020 15 6 5.5502 -7.1637 0.0013 16 6 4.1718 -7.0210 -0.0008 17 6 3.6450 -5.7375 -0.0015 18 7 2.3618 -5.2219 0.0000 19 1 1.5358 -5.7302 -0.0002 20 1 -0.4850 0.8400 -0.0004 21 1 7.4261 -6.1488 0.0024 22 1 5.9955 -8.1477 0.0023 23 1 3.5248 -7.8858 -0.0019 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307699885.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:14 Heat of formation + Delta-G solvation = 53.425360 kcal Electronic energy + Delta-G solvation = -11888.858196 eV Core-core repulsion = 9634.919556 eV Total energy + Delta-G solvation = -2253.938641 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.032 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.00571 -39.04661 -34.81888 -34.45543 -32.09049 -30.57543 -27.82316 -25.08859 -23.92589 -22.68582 -20.27867 -19.09951 -18.37215 -17.40163 -16.98289 -16.59690 -16.31507 -15.36864 -14.89970 -14.22867 -13.79004 -13.49514 -13.32933 -12.99145 -12.97775 -12.12144 -12.04749 -11.59593 -11.33106 -11.05510 -10.04642 -10.02203 -9.83947 -8.65203 -8.55802 -6.33625 -0.13766 0.43465 0.66241 1.36342 1.36405 1.53501 1.65666 1.97418 2.20597 2.85716 3.00248 3.02677 3.25849 3.66888 4.10632 4.16550 4.30578 4.69260 4.86252 5.19038 5.25682 5.47153 5.77087 6.21785 6.26759 6.71588 6.93825 7.24294 8.53949 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.051816 B = 0.007612 C = 0.006653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.242229 B = 3677.529979 C = 4207.930163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.034 3.966 3 Si 0.994 3.006 4 H -0.276 1.276 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.560 4.560 8 H 0.087 0.913 9 S 0.135 5.865 10 C 0.270 3.730 11 N -0.546 5.546 12 C 0.214 3.786 13 N -0.506 5.506 14 C 0.110 3.890 15 C -0.160 4.160 16 C -0.054 4.054 17 C -0.024 4.024 18 N -0.574 5.574 19 H 0.440 0.560 20 H 0.282 0.718 21 H 0.196 0.804 22 H 0.193 0.807 23 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.116 -14.472 -0.002 15.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.173 4.173 3 Si 0.816 3.184 4 H -0.200 1.200 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.709 4.709 8 H 0.105 0.895 9 S 0.370 5.630 10 C -0.105 4.105 11 N -0.275 5.275 12 C -0.030 4.030 13 N -0.219 5.219 14 C -0.059 4.059 15 C -0.182 4.182 16 C -0.083 4.083 17 C -0.139 4.139 18 N -0.191 5.191 19 H 0.283 0.717 20 H 0.092 0.908 21 H 0.212 0.788 22 H 0.210 0.790 23 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.533 -12.863 0.001 13.639 hybrid contribution 0.346 -0.218 -0.001 0.409 sum 4.879 -13.081 -0.001 13.962 Atomic orbital electron populations 1.69954 1.07089 1.29721 1.46938 1.25925 0.96071 1.02646 0.92665 0.84965 0.78101 0.76427 0.78905 1.20040 1.18804 1.18819 1.23410 0.96816 0.90945 1.59700 0.89519 1.83148 0.97924 0.95382 1.86586 1.26822 0.98511 0.86680 0.98450 1.70532 1.00342 1.28829 1.27764 1.19977 0.90720 0.89231 1.03027 1.66834 1.10753 1.28591 1.15699 1.23397 1.02266 0.85787 0.94464 1.22361 0.92148 1.01814 1.01892 1.20950 0.96704 0.92551 0.98121 1.20175 0.85893 0.98021 1.09801 1.42743 1.07587 1.04992 1.63821 0.71726 0.90848 0.78773 0.78994 0.80910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.40 13.22 21.64 0.29 -50.11 14 2 C 0.03 1.86 5.49 84.86 0.47 2.33 14 3 Si 0.99 44.40 29.55 68.60 2.03 46.43 14 4 H -0.28 -12.73 7.11 99.48 0.71 -12.02 14 5 H -0.26 -11.07 7.11 99.48 0.71 -10.36 14 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 14 7 C -0.56 -32.47 9.35 67.95 0.64 -31.84 14 8 H 0.09 5.35 6.85 -2.92 -0.02 5.33 14 9 S 0.14 6.81 21.89 -56.49 -1.24 5.57 14 10 C 0.27 12.64 8.19 179.54 1.47 14.11 14 11 N -0.55 -28.70 9.93 -193.56 -1.92 -30.62 14 12 C 0.21 9.68 8.35 134.53 1.12 10.80 14 13 N -0.51 -20.42 10.42 -194.36 -2.03 -22.44 14 14 C 0.11 2.90 11.15 84.80 0.95 3.84 14 15 C -0.16 -3.11 10.10 22.42 0.23 -2.88 14 16 C -0.05 -1.25 10.19 22.47 0.23 -1.02 14 17 C -0.02 -0.84 7.31 38.85 0.28 -0.55 14 18 N -0.57 -20.51 6.29 -187.17 -1.18 -21.68 14 19 H 0.44 11.69 8.96 -92.71 -0.83 10.86 14 20 H 0.28 14.49 8.31 -92.71 -0.77 13.72 14 21 H 0.20 3.36 8.06 -2.91 -0.02 3.34 14 22 H 0.19 1.65 8.06 -2.91 -0.02 1.63 14 23 H 0.17 2.44 8.06 -2.91 -0.02 2.42 14 Total: -1.00 -75.29 231.05 1.76 -73.53 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: 0.43 Total: 4.54 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 5.38 Total: -5.21 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -4.84 Total: -124.86 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: 6.81 SS G_CDS: -1.24 Total: 5.57 kcal Total: -75.29 1.76 -73.53 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307699885.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.956 kcal (2) G-P(sol) polarization free energy of solvation -75.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds