Wall clock time and date at job start Mon Mar 30 2020 02:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47230 * 2 1 4 4 C 1.53005 * 109.47191 * 120.00075 * 2 1 3 5 5 H 1.09002 * 109.46836 * 60.00056 * 4 2 1 6 6 N 1.46498 * 109.46759 * 300.00023 * 4 2 1 7 7 C 1.36941 * 119.99986 * 107.15705 * 6 4 2 8 8 H 1.08005 * 119.99834 * 359.97438 * 7 6 4 9 9 C 1.38808 * 120.00182 * 179.97438 * 7 6 4 10 10 N 1.31623 * 119.99874 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00076 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47159 * 60.00016 * 11 9 7 13 13 H 1.48503 * 109.46903 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46993 * 299.99401 * 11 9 7 15 15 C 1.50698 * 109.46945 * 180.02562 * 4 2 1 16 16 C 1.38227 * 119.61545 * 275.13750 * 15 4 2 17 17 C 1.38628 * 119.16155 * 180.02562 * 16 15 4 18 18 C 1.38678 * 118.42024 * 0.02562 * 17 16 15 19 19 C 1.38186 * 119.15943 * 0.02562 * 18 17 16 20 20 N 1.31848 * 119.62045 * 95.16591 * 15 4 2 21 21 H 1.08994 * 109.47543 * 60.00084 * 1 2 3 22 22 H 1.09008 * 109.46909 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47386 * 299.99828 * 1 2 3 24 24 H 1.08999 * 109.46895 * 240.00005 * 2 1 3 25 25 H 1.08995 * 109.47337 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.46970 * 300.00472 * 3 2 1 27 27 H 1.09007 * 109.46725 * 59.99736 * 3 2 1 28 28 H 0.96994 * 120.00582 * 287.14933 * 6 4 2 29 29 H 0.97000 * 119.99710 * 180.02562 * 10 9 7 30 30 H 1.07996 * 120.42194 * 0.05384 * 16 15 4 31 31 H 1.07997 * 120.79266 * 180.02562 * 17 16 15 32 32 H 1.08000 * 120.41968 * 179.97438 * 18 17 16 33 33 H 1.08000 * 119.61236 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -1.7490 1.2492 6 7 1.5516 -0.0306 2.4454 7 6 0.5631 -0.5953 3.2064 8 1 0.1432 -1.5497 2.9246 9 6 0.1007 0.0588 4.3400 10 7 0.6128 1.2216 4.6838 11 14 -1.2483 -0.7112 5.3778 12 1 -0.7906 -2.0293 5.8858 13 1 -1.5601 0.1795 6.5244 14 1 -2.4663 -0.8959 4.5484 15 6 3.5470 -0.7207 1.2495 16 6 4.2306 -1.7030 0.5579 17 6 5.6168 -1.6938 0.5649 18 6 6.2666 -0.6927 1.2710 19 6 5.5161 0.2554 1.9398 20 7 4.1982 0.2164 1.9099 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.9285 0.8265 2.6984 29 1 0.2899 1.6784 5.4762 30 1 3.6916 -2.4678 0.0184 31 1 6.1774 -2.4484 0.0331 32 1 7.3456 -0.6550 1.2985 33 1 6.0146 1.0381 2.4923 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308555561.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:30 Heat of formation + Delta-G solvation = 39.848243 kcal Electronic energy + Delta-G solvation = -15069.206598 eV Core-core repulsion = 12709.018438 eV Total energy + Delta-G solvation = -2360.188160 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.83398 -36.50791 -32.87100 -31.99399 -31.11812 -29.71125 -26.39588 -25.76411 -23.45386 -22.65487 -21.59801 -18.82835 -17.29275 -16.32240 -15.72427 -15.15270 -14.41388 -14.24698 -13.87229 -13.39182 -13.01546 -12.88957 -12.44281 -12.31410 -11.73579 -11.27981 -11.00256 -10.84102 -10.77311 -10.49062 -10.20221 -10.10424 -10.03249 -9.57014 -9.40490 -8.97026 -8.70888 -8.43754 -6.86662 -5.67125 -2.94367 1.55791 1.72319 3.47893 3.52442 3.53313 4.29242 4.64295 4.84130 5.09083 5.19887 5.40607 5.52343 5.58682 5.70781 5.80239 5.84226 6.01925 6.17867 6.19575 6.33763 6.39137 6.49948 6.55338 6.55701 6.73413 6.78706 6.81728 7.09868 7.17328 7.32205 7.74619 8.48932 8.63554 9.63367 10.22943 10.62016 11.54575 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.029084 B = 0.009207 C = 0.008116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.481419 B = 3040.349070 C = 3448.980820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 C -0.135 4.135 4 C 0.222 3.778 5 H 0.071 0.929 6 N -0.702 5.702 7 C -0.238 4.238 8 H 0.068 0.932 9 C -0.011 4.011 10 N -0.926 5.926 11 Si 0.903 3.097 12 H -0.288 1.288 13 H -0.292 1.292 14 H -0.286 1.286 15 C 0.144 3.856 16 C -0.181 4.181 17 C -0.081 4.081 18 C -0.197 4.197 19 C 0.098 3.902 20 N -0.455 5.455 21 H 0.034 0.966 22 H 0.042 0.958 23 H 0.079 0.921 24 H 0.049 0.951 25 H 0.043 0.957 26 H 0.036 0.964 27 H 0.068 0.932 28 H 0.397 0.603 29 H 0.254 0.746 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.800 -3.826 -9.766 13.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.126 4.126 3 C -0.193 4.193 4 C 0.109 3.891 5 H 0.089 0.911 6 N -0.342 5.342 7 C -0.370 4.370 8 H 0.086 0.914 9 C -0.208 4.208 10 N -0.574 5.574 11 Si 0.734 3.266 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.213 1.213 15 C 0.004 3.996 16 C -0.202 4.202 17 C -0.107 4.107 18 C -0.217 4.217 19 C -0.060 4.060 20 N -0.163 5.163 21 H 0.053 0.947 22 H 0.062 0.938 23 H 0.098 0.902 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.233 0.767 29 H 0.064 0.936 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.164 -3.261 -9.180 12.093 hybrid contribution 0.086 -0.875 0.279 0.922 sum 7.250 -4.136 -8.901 12.203 Atomic orbital electron populations 1.21672 0.94768 1.00972 1.01709 1.21656 0.96576 0.96837 0.97538 1.21693 0.99863 0.96467 1.01267 1.19281 0.84503 0.96350 0.88967 0.91057 1.42301 1.43018 1.23722 1.25119 1.19231 1.11165 1.02471 1.04084 0.91418 1.24708 1.00218 0.97186 0.98650 1.69684 1.44959 1.15491 1.27234 0.86341 0.82059 0.78124 0.80080 1.21488 1.21806 1.21330 1.22470 0.98884 0.88852 0.89392 1.21953 0.94725 1.01116 1.02414 1.21431 0.94524 0.97483 0.97249 1.21994 1.00739 0.97589 1.01411 1.22806 0.90139 0.97129 0.95879 1.67568 1.08827 1.23919 1.16006 0.94661 0.93842 0.90245 0.93238 0.93840 0.94533 0.91300 0.76726 0.93596 0.85430 0.85756 0.85781 0.83491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 8.89 37.16 0.33 -2.12 16 2 C -0.10 -1.89 2.79 -90.62 -0.25 -2.14 16 3 C -0.14 -2.49 8.67 37.16 0.32 -2.17 16 4 C 0.22 4.54 2.40 -69.08 -0.17 4.37 16 5 H 0.07 1.44 7.80 -51.93 -0.41 1.04 16 6 N -0.70 -17.66 3.74 -54.55 -0.20 -17.87 16 7 C -0.24 -6.54 9.20 -15.06 -0.14 -6.68 16 8 H 0.07 1.79 7.69 -52.48 -0.40 1.39 16 9 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 10 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 11 Si 0.90 22.52 29.55 -169.99 -5.02 17.49 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 C 0.14 2.74 4.89 -82.59 -0.40 2.34 16 16 C -0.18 -2.83 9.77 -39.44 -0.39 -3.21 16 17 C -0.08 -1.09 10.18 -39.27 -0.40 -1.49 16 18 C -0.20 -2.68 10.11 -39.44 -0.40 -3.08 16 19 C 0.10 1.60 11.18 -17.55 -0.20 1.40 16 20 N -0.45 -9.08 8.62 -9.48 -0.08 -9.16 16 21 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 23 H 0.08 1.73 7.14 -51.93 -0.37 1.35 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.80 6.76 -51.93 -0.35 0.44 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.46 7.14 -51.93 -0.37 1.09 16 28 H 0.40 10.93 6.62 -40.82 -0.27 10.66 16 29 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 31 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 32 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.15 2.04 8.06 -52.49 -0.42 1.61 16 LS Contribution 276.12 15.07 4.16 4.16 Total: -1.00 -30.71 276.12 -6.90 -37.61 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -4.69 Total: 8.47 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -1.78 Total: -13.20 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.44 Total: -54.53 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.71 -6.90 -37.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308555561.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.454 kcal (2) G-P(sol) polarization free energy of solvation -30.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds