Wall clock time and date at job start Mon Mar 30 2020 02:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47230 * 2 1 4 4 C 1.53005 * 109.47191 * 120.00075 * 2 1 3 5 5 H 1.09002 * 109.46836 * 60.00056 * 4 2 1 6 6 N 1.46498 * 109.46759 * 300.00023 * 4 2 1 7 7 C 1.36941 * 119.99986 * 107.15705 * 6 4 2 8 8 H 1.08005 * 119.99834 * 359.97438 * 7 6 4 9 9 C 1.38808 * 120.00182 * 179.97438 * 7 6 4 10 10 N 1.31623 * 119.99874 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00076 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47159 * 60.00016 * 11 9 7 13 13 H 1.48503 * 109.46903 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46993 * 299.99401 * 11 9 7 15 15 C 1.50698 * 109.46945 * 180.02562 * 4 2 1 16 16 C 1.38227 * 119.61545 * 275.13750 * 15 4 2 17 17 C 1.38628 * 119.16155 * 180.02562 * 16 15 4 18 18 C 1.38678 * 118.42024 * 0.02562 * 17 16 15 19 19 C 1.38186 * 119.15943 * 0.02562 * 18 17 16 20 20 N 1.31848 * 119.62045 * 95.16591 * 15 4 2 21 21 H 1.08994 * 109.47543 * 60.00084 * 1 2 3 22 22 H 1.09008 * 109.46909 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47386 * 299.99828 * 1 2 3 24 24 H 1.08999 * 109.46895 * 240.00005 * 2 1 3 25 25 H 1.08995 * 109.47337 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.46970 * 300.00472 * 3 2 1 27 27 H 1.09007 * 109.46725 * 59.99736 * 3 2 1 28 28 H 0.96994 * 120.00582 * 287.14933 * 6 4 2 29 29 H 0.97000 * 119.99710 * 180.02562 * 10 9 7 30 30 H 1.07996 * 120.42194 * 0.05384 * 16 15 4 31 31 H 1.07997 * 120.79266 * 180.02562 * 17 16 15 32 32 H 1.08000 * 120.41968 * 179.97438 * 18 17 16 33 33 H 1.08000 * 119.61236 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -1.7490 1.2492 6 7 1.5516 -0.0306 2.4454 7 6 0.5631 -0.5953 3.2064 8 1 0.1432 -1.5497 2.9246 9 6 0.1007 0.0588 4.3400 10 7 0.6128 1.2216 4.6838 11 14 -1.2483 -0.7112 5.3778 12 1 -0.7906 -2.0293 5.8858 13 1 -1.5601 0.1795 6.5244 14 1 -2.4663 -0.8959 4.5484 15 6 3.5470 -0.7207 1.2495 16 6 4.2306 -1.7030 0.5579 17 6 5.6168 -1.6938 0.5649 18 6 6.2666 -0.6927 1.2710 19 6 5.5161 0.2554 1.9398 20 7 4.1982 0.2164 1.9099 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.9285 0.8265 2.6984 29 1 0.2899 1.6784 5.4762 30 1 3.6916 -2.4678 0.0184 31 1 6.1774 -2.4484 0.0331 32 1 7.3456 -0.6550 1.2985 33 1 6.0146 1.0381 2.4923 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308555561.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:29 Heat of formation + Delta-G solvation = 20.734770 kcal Electronic energy + Delta-G solvation = -15070.035420 eV Core-core repulsion = 12709.018438 eV Total energy + Delta-G solvation = -2361.016982 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.10836 -38.06530 -34.82417 -33.21302 -32.52279 -31.51405 -27.89442 -27.41118 -25.18817 -24.02634 -22.94759 -20.34645 -19.26327 -17.60358 -17.12894 -16.42592 -16.15644 -15.89811 -15.35714 -15.02745 -14.60041 -14.29224 -13.84609 -13.75296 -13.01971 -12.91825 -12.84398 -12.72859 -12.35031 -12.07319 -12.01791 -11.97219 -11.56608 -11.33462 -10.92705 -10.62380 -10.05130 -9.69895 -8.89012 -7.83750 -5.09786 0.35112 0.58409 1.47588 1.50611 1.56180 2.60792 3.05344 3.45611 3.59043 3.88383 4.11300 4.19389 4.24542 4.33271 4.40248 4.42450 4.58156 4.85229 4.86902 4.93210 4.99106 5.03112 5.19006 5.21158 5.33065 5.38417 5.40850 5.54349 5.57368 5.77526 5.98800 6.35833 7.36746 7.44331 8.24957 8.49950 9.39569 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.029084 B = 0.009207 C = 0.008116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.481419 B = 3040.349070 C = 3448.980820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.097 4.097 3 C -0.125 4.125 4 C 0.216 3.784 5 H 0.071 0.929 6 N -0.714 5.714 7 C -0.226 4.226 8 H 0.076 0.924 9 C -0.079 4.079 10 N -0.969 5.969 11 Si 0.966 3.034 12 H -0.282 1.282 13 H -0.300 1.300 14 H -0.277 1.277 15 C 0.112 3.888 16 C -0.181 4.181 17 C -0.075 4.075 18 C -0.181 4.181 19 C 0.073 3.927 20 N -0.503 5.503 21 H 0.059 0.941 22 H 0.051 0.949 23 H 0.036 0.964 24 H 0.082 0.918 25 H 0.040 0.960 26 H 0.058 0.942 27 H 0.029 0.971 28 H 0.381 0.619 29 H 0.246 0.754 30 H 0.151 0.849 31 H 0.168 0.832 32 H 0.163 0.837 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.114 -5.803 -11.750 15.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.119 4.119 3 C -0.182 4.182 4 C 0.105 3.895 5 H 0.089 0.911 6 N -0.352 5.352 7 C -0.359 4.359 8 H 0.093 0.907 9 C -0.271 4.271 10 N -0.620 5.620 11 Si 0.796 3.204 12 H -0.209 1.209 13 H -0.227 1.227 14 H -0.203 1.203 15 C -0.027 4.027 16 C -0.201 4.201 17 C -0.100 4.100 18 C -0.200 4.200 19 C -0.084 4.084 20 N -0.212 5.212 21 H 0.078 0.922 22 H 0.070 0.930 23 H 0.055 0.945 24 H 0.100 0.900 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.214 0.786 29 H 0.055 0.945 30 H 0.169 0.831 31 H 0.185 0.815 32 H 0.181 0.819 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 8.491 -5.287 -11.220 15.031 hybrid contribution -0.177 -0.298 0.769 0.843 sum 8.314 -5.585 -10.451 14.475 Atomic orbital electron populations 1.21600 0.94993 1.01222 1.00780 1.21575 0.96254 0.96474 0.97556 1.21568 0.99605 0.96695 1.00361 1.19492 0.86192 0.95846 0.87954 0.91143 1.42389 1.42824 1.23504 1.26491 1.19624 1.10607 1.02078 1.03556 0.90659 1.25467 1.03118 0.97998 1.00528 1.69867 1.47081 1.17289 1.27754 0.85310 0.79767 0.77082 0.78212 1.20856 1.22705 1.20317 1.22163 0.97865 0.90754 0.91907 1.22189 0.96029 1.00262 1.01643 1.21932 0.93780 0.97883 0.96445 1.22401 1.02534 0.95967 0.99133 1.23164 0.89363 0.98756 0.97081 1.67412 1.10913 1.25401 1.17488 0.92213 0.92966 0.94486 0.89961 0.94065 0.92287 0.95151 0.78577 0.94528 0.83102 0.81474 0.81945 0.82388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 8.89 71.98 0.64 -3.95 16 2 C -0.10 -3.42 2.79 -10.79 -0.03 -3.45 16 3 C -0.12 -4.59 8.67 71.98 0.62 -3.96 16 4 C 0.22 8.79 2.40 44.25 0.11 8.90 16 5 H 0.07 2.80 7.80 -2.39 -0.02 2.78 16 6 N -0.71 -37.04 3.74 -326.49 -1.22 -38.26 16 7 C -0.23 -12.71 9.20 84.03 0.77 -11.94 16 8 H 0.08 4.01 7.69 -2.91 -0.02 3.98 16 9 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 10 N -0.97 -61.67 13.06 21.65 0.28 -61.38 16 11 Si 0.97 47.47 29.55 68.60 2.03 49.49 16 12 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 13 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 14 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 15 C 0.11 4.18 4.89 42.55 0.21 4.39 16 16 C -0.18 -5.10 9.77 22.36 0.22 -4.88 16 17 C -0.07 -1.68 10.18 22.47 0.23 -1.45 16 18 C -0.18 -4.27 10.11 22.36 0.23 -4.04 16 19 C 0.07 2.32 11.18 84.67 0.95 3.26 16 20 N -0.50 -20.22 8.62 -183.89 -1.59 -21.81 16 21 H 0.06 1.80 8.14 -2.39 -0.02 1.79 16 22 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 23 H 0.04 1.63 7.14 -2.39 -0.02 1.61 16 24 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.04 1.51 6.76 -2.39 -0.02 1.49 16 26 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.03 1.33 7.14 -2.38 -0.02 1.31 16 28 H 0.38 22.10 6.62 -92.71 -0.61 21.49 16 29 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 30 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 31 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 32 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 33 H 0.16 4.33 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -69.54 276.12 4.39 -65.15 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.47 Total: 28.15 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: 4.41 Total: -21.34 kcal Atomic # 7 Polarization: -118.93 SS G_CDS: -2.52 Total: -121.46 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.49 kcal Total: -69.54 4.39 -65.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308555561.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.887 kcal (2) G-P(sol) polarization free energy of solvation -69.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds