Wall clock time and date at job start Mon Mar 30 2020 03:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47290 * 2 1 4 4 C 1.50704 * 109.47121 * 239.99929 * 2 1 3 5 5 H 1.07996 * 120.00092 * 240.00727 * 4 2 1 6 6 C 1.37881 * 119.99958 * 60.00038 * 4 2 1 7 7 N 1.31511 * 119.99854 * 0.02562 * 6 4 2 8 8 Si 1.86791 * 119.99826 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47418 * 90.00078 * 8 6 4 10 10 H 1.48500 * 109.46960 * 210.00145 * 8 6 4 11 11 H 1.48502 * 109.47625 * 329.99777 * 8 6 4 12 12 N 1.46500 * 109.47082 * 120.00089 * 2 1 3 13 13 C 1.34954 * 126.03681 * 34.99658 * 12 2 1 14 14 C 1.35315 * 107.74451 * 179.97438 * 13 12 2 15 15 C 1.50696 * 126.03620 * 180.02562 * 14 13 12 16 16 C 1.53781 * 113.61505 * 219.13769 * 15 14 13 17 17 C 1.53957 * 87.02250 * 220.04988 * 16 15 14 18 18 C 1.53779 * 113.61543 * 121.53233 * 15 14 13 19 19 C 1.39867 * 107.92134 * 0.02562 * 14 13 12 20 20 N 1.30834 * 108.20347 * 359.97438 * 19 14 13 21 21 H 1.09001 * 109.46834 * 60.00178 * 1 2 3 22 22 H 1.09000 * 109.47290 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46894 * 300.00109 * 1 2 3 24 24 H 0.97005 * 120.00045 * 179.97438 * 7 6 4 25 25 H 1.08001 * 126.12517 * 359.72069 * 13 12 2 26 26 H 1.09000 * 112.85670 * 350.33380 * 15 14 13 27 27 H 1.09002 * 113.61315 * 334.57050 * 16 15 14 28 28 H 1.09000 * 113.61731 * 105.46889 * 16 15 14 29 29 H 1.08994 * 113.53207 * 270.80776 * 17 16 15 30 30 H 1.09002 * 113.66582 * 139.93208 * 17 16 15 31 31 H 1.08997 * 113.61967 * 254.53107 * 18 15 14 32 32 H 1.09002 * 113.61423 * 25.43220 * 18 15 14 33 33 H 1.08000 * 125.89932 * 180.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.3427 -2.1617 -4.4119 10 1 2.4866 -0.1414 -5.1122 11 1 3.6293 -1.7584 -3.7123 12 7 2.0183 -0.6906 1.1962 13 6 1.4401 -1.7559 1.7895 14 6 2.1967 -2.0930 2.8595 15 6 1.9265 -3.2270 3.8145 16 6 2.2334 -2.8834 5.2816 17 6 2.8125 -4.3041 5.4095 18 6 3.0710 -4.2510 3.8945 19 6 3.2738 -1.2030 2.9226 20 7 3.1680 -0.3620 1.9259 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.7095 1.1618 -3.4845 25 1 0.5335 -2.2484 1.4701 26 1 0.9456 -3.6792 3.6680 27 1 2.9781 -2.0961 5.3991 28 1 1.3422 -2.7180 5.8870 29 1 2.0736 -5.0507 5.7005 30 1 3.7232 -4.3533 6.0064 31 1 2.8551 -5.1882 3.3816 32 1 4.0451 -3.8384 3.6320 33 1 4.0579 -1.2093 3.6653 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402015584.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:29 Heat of formation + Delta-G solvation = 82.687645 kcal Electronic energy + Delta-G solvation = -14668.506417 eV Core-core repulsion = 12310.175913 eV Total energy + Delta-G solvation = -2358.330504 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.48644 -38.06089 -34.58824 -31.69067 -29.72686 -28.30848 -25.51646 -25.34278 -24.61990 -22.04315 -20.38375 -19.36351 -18.46125 -16.73312 -16.06950 -15.20588 -14.66259 -14.05395 -13.94329 -13.47598 -12.86633 -12.46593 -12.21054 -11.96155 -11.93072 -11.73083 -11.18741 -10.94791 -10.90530 -10.62040 -10.38975 -10.30325 -10.20100 -9.98770 -9.65008 -9.48697 -8.63021 -8.41603 -7.43988 -6.25625 -4.35117 2.89410 3.19716 3.26509 3.31676 3.49665 3.69591 4.28832 4.89594 4.93917 4.98720 5.05843 5.36517 5.58423 5.64030 5.78347 5.89221 6.00951 6.04639 6.15084 6.18244 6.31397 6.37738 6.49394 6.63674 6.66838 6.82058 6.92986 7.23003 7.44674 7.57762 7.71187 7.95407 8.14341 8.66941 8.76266 9.32156 10.79201 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.045084 B = 0.006678 C = 0.006321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.909585 B = 4191.939947 C = 4428.722440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.274 3.726 3 H 0.060 0.940 4 C -0.530 4.530 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.889 5.889 8 Si 0.907 3.093 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.273 1.273 12 N -0.323 5.323 13 C 0.065 3.935 14 C -0.259 4.259 15 C -0.022 4.022 16 C -0.132 4.132 17 C -0.145 4.145 18 C -0.133 4.133 19 C 0.025 3.975 20 N -0.303 5.303 21 H 0.105 0.895 22 H 0.038 0.962 23 H 0.020 0.980 24 H 0.267 0.733 25 H 0.160 0.840 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.045 -7.227 10.632 12.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.176 3.824 3 H 0.078 0.922 4 C -0.568 4.568 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.527 5.527 8 Si 0.734 3.266 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.102 5.102 13 C -0.085 4.085 14 C -0.271 4.271 15 C -0.041 4.041 16 C -0.170 4.170 17 C -0.183 4.183 18 C -0.171 4.171 19 C -0.159 4.159 20 N -0.126 5.126 21 H 0.124 0.876 22 H 0.057 0.943 23 H 0.040 0.960 24 H 0.077 0.923 25 H 0.177 0.823 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.351 -5.971 9.738 11.428 hybrid contribution -0.089 -1.145 -0.526 1.263 sum 0.262 -7.115 9.212 11.643 Atomic orbital electron populations 1.22152 0.96179 1.00556 1.01952 1.19261 0.91524 0.93641 0.77981 0.92181 1.21296 1.32569 1.13348 0.89610 0.91855 1.24883 0.94647 0.94928 0.99105 1.69846 1.36053 1.22437 1.24342 0.86340 0.79392 0.79264 0.81603 1.20346 1.20851 1.19736 1.49551 1.16728 1.22220 1.21738 1.22156 0.99648 0.92126 0.94616 1.19677 1.00652 1.04467 1.02309 1.20591 0.97986 0.93097 0.92470 1.22996 1.00696 0.96588 0.96727 1.22868 1.00649 0.97642 0.97124 1.22980 0.99568 0.99093 0.95422 1.23351 0.99187 0.95313 0.98038 1.77266 1.04280 1.24156 1.06882 0.87616 0.94252 0.96045 0.92290 0.82297 0.89688 0.90166 0.92080 0.90706 0.91979 0.92078 0.90181 0.81882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.61 37.16 0.32 -3.11 16 2 C 0.27 6.98 3.31 -69.08 -0.23 6.76 16 3 H 0.06 1.68 8.14 -51.93 -0.42 1.25 16 4 C -0.53 -14.47 8.84 -34.44 -0.30 -14.78 16 5 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -24.17 11.32 55.43 0.63 -23.55 16 8 Si 0.91 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 12 N -0.32 -7.58 3.51 -55.99 -0.20 -7.77 16 13 C 0.07 1.32 10.50 -17.22 -0.18 1.14 16 14 C -0.26 -4.65 5.33 -105.06 -0.56 -5.21 16 15 C -0.02 -0.31 4.18 -90.96 -0.38 -0.69 16 16 C -0.13 -1.59 7.58 -25.83 -0.20 -1.78 16 17 C -0.15 -1.54 8.09 -25.83 -0.21 -1.75 16 18 C -0.13 -1.67 7.61 -25.92 -0.20 -1.87 16 19 C 0.03 0.48 11.04 -17.37 -0.19 0.29 16 20 N -0.30 -7.01 12.58 30.62 0.39 -6.63 16 21 H 0.11 2.61 6.07 -51.93 -0.32 2.30 16 22 H 0.04 0.84 7.16 -51.93 -0.37 0.47 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 25 H 0.16 2.88 7.26 -52.49 -0.38 2.50 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.08 0.98 7.14 -51.93 -0.37 0.61 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.06 7.94 -51.93 -0.41 0.65 16 33 H 0.16 2.55 7.65 -52.49 -0.40 2.15 16 LS Contribution 274.99 15.07 4.14 4.14 Total: -1.00 -28.42 274.99 -7.04 -35.46 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -4.76 Total: 1.73 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -2.22 Total: -19.29 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.82 Total: -37.95 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.42 -7.04 -35.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402015584.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.145 kcal (2) G-P(sol) polarization free energy of solvation -28.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds