Wall clock time and date at job start Mon Mar 30 2020 02:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34952 * 126.03576 * 85.00217 * 13 3 2 15 15 C 1.35312 * 107.74540 * 179.97438 * 14 13 3 16 16 C 1.50702 * 126.04309 * 179.97438 * 15 14 13 17 17 C 1.52998 * 117.50347 * 188.62541 * 16 15 14 18 18 C 1.52999 * 117.49778 * 119.99979 * 16 15 14 19 19 C 1.39874 * 107.92356 * 0.02562 * 15 14 13 20 20 N 1.30839 * 108.19817 * 359.73452 * 19 15 14 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 25 25 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 26 26 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 27 27 H 1.07996 * 126.12644 * 0.02562 * 14 13 3 28 28 H 1.09005 * 115.55032 * 334.33927 * 16 15 14 29 29 H 1.09001 * 117.49753 * 0.02562 * 17 16 15 30 30 H 1.08993 * 117.49700 * 145.02233 * 17 16 15 31 31 H 1.09000 * 117.49621 * 214.98336 * 18 16 15 32 32 H 1.08993 * 117.50297 * 359.97438 * 18 16 15 33 33 H 1.07995 * 125.90047 * 180.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 2.3288 2.0438 2.4184 15 6 1.6443 2.7777 3.3260 16 6 2.0340 2.9958 4.7654 17 6 1.0189 3.6914 5.6745 18 6 2.2762 4.4362 5.2211 19 6 0.5105 3.2971 2.6927 20 7 0.5172 2.8943 1.4479 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 3.8292 -0.0604 -2.9503 27 1 3.2516 1.5114 2.5955 28 1 2.6552 2.2169 5.2075 29 1 0.0689 3.9909 5.2317 30 1 0.9720 3.3701 6.7149 31 1 3.0564 4.6047 5.9634 32 1 2.1541 5.2259 4.4799 33 1 -0.2384 3.9261 3.1508 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402020863.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:43 Heat of formation + Delta-G solvation = 86.227174 kcal Electronic energy + Delta-G solvation = -14802.269151 eV Core-core repulsion = 12444.092133 eV Total energy + Delta-G solvation = -2358.177018 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.42182 -36.75669 -34.96277 -31.95057 -30.23884 -29.10252 -26.80702 -23.59607 -22.36890 -22.11972 -21.16488 -19.43338 -18.85172 -16.60634 -16.05773 -15.11713 -14.50883 -14.23812 -13.72960 -13.68359 -12.83416 -12.49669 -12.13493 -11.88088 -11.46710 -11.42935 -11.30582 -11.07681 -10.91257 -10.52887 -10.35129 -10.20097 -10.09115 -9.86663 -9.72532 -9.28667 -8.67582 -8.39827 -7.37407 -6.31850 -4.42569 2.88155 3.17954 3.22888 3.24644 3.38286 3.68227 4.23648 4.36340 4.99823 5.01826 5.24345 5.39255 5.63286 5.77769 5.85122 5.89029 6.10618 6.15950 6.20157 6.32880 6.37671 6.39331 6.63213 6.81272 6.83894 6.91875 7.02100 7.28213 7.47055 7.55059 7.69311 7.85853 8.13523 8.64103 8.73792 9.25160 10.73715 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.030215 B = 0.008458 C = 0.007003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.478745 B = 3309.500728 C = 3997.264595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.283 3.717 4 H 0.060 0.940 5 C -0.541 4.541 6 H 0.068 0.932 7 C 0.071 3.929 8 N -0.883 5.883 9 Si 0.908 3.092 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.322 5.322 14 C 0.084 3.916 15 C -0.248 4.248 16 C -0.056 4.056 17 C -0.182 4.182 18 C -0.182 4.182 19 C 0.026 3.974 20 N -0.310 5.310 21 H 0.046 0.954 22 H 0.042 0.958 23 H 0.035 0.965 24 H 0.039 0.961 25 H 0.110 0.890 26 H 0.269 0.731 27 H 0.164 0.836 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.781 2.276 9.623 10.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.167 4.167 3 C 0.184 3.816 4 H 0.078 0.922 5 C -0.580 4.580 6 H 0.086 0.914 7 C -0.133 4.133 8 N -0.520 5.520 9 Si 0.735 3.265 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.200 1.200 13 N -0.101 5.101 14 C -0.067 4.067 15 C -0.260 4.260 16 C -0.076 4.076 17 C -0.219 4.219 18 C -0.220 4.220 19 C -0.158 4.158 20 N -0.133 5.133 21 H 0.066 0.934 22 H 0.061 0.939 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.128 0.872 26 H 0.079 0.921 27 H 0.181 0.819 28 H 0.119 0.881 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.365 2.133 8.117 8.720 hybrid contribution 1.396 -0.039 0.648 1.540 sum -0.968 2.094 8.765 9.063 Atomic orbital electron populations 1.21794 0.98223 0.99387 1.00957 1.21971 0.92946 0.98406 1.03350 1.19284 0.95264 0.89233 0.77774 0.92243 1.21230 0.89597 1.40058 1.07130 0.91401 1.24875 0.99232 0.94260 0.94951 1.69853 1.35665 1.37102 1.09342 0.86387 0.83898 0.78594 0.77668 1.19854 1.20891 1.19952 1.49515 1.15361 1.34789 1.10446 1.22086 0.98335 0.99932 0.86313 1.19096 1.00229 1.11408 0.95241 1.20064 1.01659 0.94692 0.91172 1.22898 0.94401 1.05375 0.99205 1.22979 0.99487 0.96141 1.03366 1.23358 0.98556 1.01845 0.92029 1.77234 1.06552 1.11847 1.17630 0.93444 0.93852 0.94549 0.94202 0.87180 0.92104 0.81859 0.88052 0.89024 0.89345 0.89410 0.89040 0.81926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.80 37.16 0.36 -2.69 16 2 C -0.13 -2.98 5.45 -26.74 -0.15 -3.13 16 3 C 0.28 7.06 2.70 -69.08 -0.19 6.87 16 4 H 0.06 1.65 8.14 -51.93 -0.42 1.22 16 5 C -0.54 -14.06 8.30 -34.44 -0.29 -14.35 16 6 H 0.07 1.74 6.73 -52.49 -0.35 1.38 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -23.52 11.30 55.43 0.63 -22.89 16 9 Si 0.91 20.10 29.54 -169.99 -5.02 15.08 16 10 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 N -0.32 -7.40 3.04 -56.00 -0.17 -7.57 16 14 C 0.08 1.74 10.22 -17.22 -0.18 1.56 16 15 C -0.25 -4.53 5.76 -105.05 -0.61 -5.14 16 16 C -0.06 -0.83 6.25 -91.77 -0.57 -1.40 16 17 C -0.18 -2.22 10.02 -26.73 -0.27 -2.49 16 18 C -0.18 -2.34 10.23 -26.73 -0.27 -2.61 16 19 C 0.03 0.49 11.35 -17.36 -0.20 0.30 16 20 N -0.31 -6.89 12.01 30.62 0.37 -6.52 16 21 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 22 H 0.04 0.92 7.23 -51.93 -0.38 0.54 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.11 2.77 5.95 -51.93 -0.31 2.47 16 26 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 27 H 0.16 3.15 7.56 -52.49 -0.40 2.76 16 28 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.09 1.10 6.97 -51.93 -0.36 0.74 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.16 2.53 7.19 -52.49 -0.38 2.15 16 LS Contribution 277.67 15.07 4.18 4.18 Total: -1.00 -27.10 277.67 -7.15 -34.25 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -4.69 Total: 4.82 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -2.44 Total: -21.35 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.82 Total: -36.99 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.10 -7.15 -34.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402020863.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.475 kcal (2) G-P(sol) polarization free energy of solvation -27.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds