Wall clock time and date at job start Mon Mar 30 2020 02:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34952 * 126.03576 * 85.00217 * 13 3 2 15 15 C 1.35312 * 107.74540 * 179.97438 * 14 13 3 16 16 C 1.50702 * 126.04309 * 179.97438 * 15 14 13 17 17 C 1.52998 * 117.50347 * 188.62541 * 16 15 14 18 18 C 1.52999 * 117.49778 * 119.99979 * 16 15 14 19 19 C 1.39874 * 107.92356 * 0.02562 * 15 14 13 20 20 N 1.30839 * 108.19817 * 359.73452 * 19 15 14 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 25 25 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 26 26 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 27 27 H 1.07996 * 126.12644 * 0.02562 * 14 13 3 28 28 H 1.09005 * 115.55032 * 334.33927 * 16 15 14 29 29 H 1.09001 * 117.49753 * 0.02562 * 17 16 15 30 30 H 1.08993 * 117.49700 * 145.02233 * 17 16 15 31 31 H 1.09000 * 117.49621 * 214.98336 * 18 16 15 32 32 H 1.08993 * 117.50297 * 359.97438 * 18 16 15 33 33 H 1.07995 * 125.90047 * 180.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 2.3288 2.0438 2.4184 15 6 1.6443 2.7777 3.3260 16 6 2.0340 2.9958 4.7654 17 6 1.0189 3.6914 5.6745 18 6 2.2762 4.4362 5.2211 19 6 0.5105 3.2971 2.6927 20 7 0.5172 2.8943 1.4479 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 3.8292 -0.0604 -2.9503 27 1 3.2516 1.5114 2.5955 28 1 2.6552 2.2169 5.2075 29 1 0.0689 3.9909 5.2317 30 1 0.9720 3.3701 6.7149 31 1 3.0564 4.6047 5.9634 32 1 2.1541 5.2259 4.4799 33 1 -0.2384 3.9261 3.1508 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402020863.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:43 Heat of formation + Delta-G solvation = 72.591707 kcal Electronic energy + Delta-G solvation = -14802.860430 eV Core-core repulsion = 12444.092133 eV Total energy + Delta-G solvation = -2358.768296 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.00117 -37.97619 -36.71595 -33.87842 -31.93091 -30.63149 -28.67118 -25.42664 -23.70050 -23.23608 -22.73422 -21.13490 -20.36132 -18.49735 -17.66119 -16.61121 -16.08282 -15.82442 -15.42886 -14.99263 -14.59068 -14.15919 -13.81510 -13.41882 -13.27454 -12.91376 -12.85857 -12.66976 -12.23181 -12.15780 -12.11896 -11.78372 -11.59759 -11.29011 -11.19888 -11.03485 -10.63585 -10.09634 -8.88508 -8.28955 -6.47549 1.26595 1.41908 1.42791 1.51002 1.95718 1.99234 2.38526 3.00920 3.28047 3.82003 4.18413 4.19434 4.29527 4.36391 4.38771 4.41946 4.61059 4.65752 4.78265 4.92527 4.98047 5.13516 5.14883 5.21451 5.31589 5.40157 5.42616 5.48795 5.58667 5.68325 5.92048 6.07068 6.32905 6.69146 7.11727 7.24253 8.76207 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.030215 B = 0.008458 C = 0.007003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.478745 B = 3309.500728 C = 3997.264595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.119 4.119 3 C 0.291 3.709 4 H 0.019 0.981 5 C -0.559 4.559 6 H 0.066 0.934 7 C 0.028 3.972 8 N -0.908 5.908 9 Si 0.971 3.029 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.275 1.275 13 N -0.344 5.344 14 C 0.060 3.940 15 C -0.231 4.231 16 C -0.084 4.084 17 C -0.163 4.163 18 C -0.175 4.175 19 C 0.031 3.969 20 N -0.346 5.346 21 H 0.039 0.961 22 H 0.038 0.962 23 H 0.061 0.939 24 H 0.039 0.961 25 H 0.090 0.910 26 H 0.271 0.729 27 H 0.169 0.831 28 H 0.112 0.888 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.435 2.646 11.695 12.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.158 4.158 3 C 0.191 3.809 4 H 0.036 0.964 5 C -0.597 4.597 6 H 0.084 0.916 7 C -0.174 4.174 8 N -0.545 5.545 9 Si 0.795 3.205 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.200 1.200 13 N -0.124 5.124 14 C -0.089 4.089 15 C -0.243 4.243 16 C -0.103 4.103 17 C -0.200 4.200 18 C -0.212 4.212 19 C -0.153 4.153 20 N -0.168 5.168 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.080 0.920 24 H 0.058 0.942 25 H 0.108 0.892 26 H 0.081 0.919 27 H 0.186 0.814 28 H 0.130 0.870 29 H 0.113 0.887 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.100 0.900 33 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -2.023 2.507 10.214 10.710 hybrid contribution 1.232 -0.080 0.079 1.238 sum -0.791 2.427 10.294 10.605 Atomic orbital electron populations 1.21656 0.96381 1.00770 1.00286 1.21801 0.94529 0.97313 1.02173 1.18916 0.94650 0.89533 0.77775 0.96361 1.21466 0.90355 1.40404 1.07485 0.91569 1.25671 1.03521 0.93703 0.94471 1.69966 1.37357 1.37461 1.09714 0.85405 0.78616 0.78478 0.77999 1.18820 1.20326 1.19996 1.49279 1.16457 1.36229 1.10432 1.22410 0.99001 1.01225 0.86229 1.19481 0.98940 1.09124 0.96723 1.20162 1.04247 0.96481 0.89393 1.23019 0.93947 1.03204 0.99802 1.23024 1.00665 0.94233 1.03311 1.23970 0.99156 1.01089 0.91065 1.77189 1.07025 1.12952 1.19654 0.94225 0.94295 0.92036 0.94228 0.89191 0.91927 0.81423 0.87007 0.88708 0.86975 0.87358 0.90038 0.78543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.63 9.80 71.98 0.71 -4.93 16 2 C -0.12 -5.71 5.45 30.59 0.17 -5.54 16 3 C 0.29 15.06 2.70 44.24 0.12 15.18 16 4 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 5 C -0.56 -29.74 8.30 25.60 0.21 -29.52 16 6 H 0.07 3.45 6.73 -2.91 -0.02 3.43 16 7 C 0.03 1.47 5.29 84.65 0.45 1.92 16 8 N -0.91 -49.40 11.30 21.45 0.24 -49.16 16 9 Si 0.97 41.26 29.54 68.60 2.03 43.29 16 10 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 11 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 13 N -0.34 -16.15 3.04 -331.07 -1.01 -17.16 16 14 C 0.06 2.50 10.22 83.54 0.85 3.35 16 15 C -0.23 -8.14 5.76 -20.14 -0.12 -8.26 16 16 C -0.08 -2.22 6.25 -11.54 -0.07 -2.29 16 17 C -0.16 -3.34 10.02 30.59 0.31 -3.04 16 18 C -0.18 -3.92 10.23 30.60 0.31 -3.60 16 19 C 0.03 1.14 11.35 85.24 0.97 2.10 16 20 N -0.35 -15.46 12.01 -57.02 -0.68 -16.15 16 21 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.04 1.65 7.23 -2.39 -0.02 1.63 16 23 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 24 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.09 4.68 5.95 -2.39 -0.01 4.66 16 26 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 27 H 0.17 6.55 7.56 -2.91 -0.02 6.53 16 28 H 0.11 2.74 8.14 -2.38 -0.02 2.72 16 29 H 0.09 1.90 6.97 -2.39 -0.02 1.89 16 30 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.20 5.57 7.19 -2.91 -0.02 5.55 16 Total: -1.00 -58.98 277.67 5.57 -53.42 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 1.08 Total: 20.38 kcal Atomic # 6 Polarization: -38.53 SS G_CDS: 3.90 Total: -34.63 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -1.45 Total: -82.46 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -58.98 5.57 -53.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402020863.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.008 kcal (2) G-P(sol) polarization free energy of solvation -58.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds