Wall clock time and date at job start Mon Mar 30 2020 03:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.46905 * 110.99995 * 123.95456 * 2 1 3 5 5 C 1.50695 * 109.46944 * 66.04457 * 4 2 1 6 6 C 1.38328 * 119.91294 * 269.72382 * 5 4 2 7 7 C 1.38054 * 120.08965 * 179.72887 * 6 5 4 8 8 C 1.39082 * 119.90762 * 0.56685 * 7 6 5 9 9 N 1.39302 * 120.08940 * 179.68246 * 8 7 6 10 10 C 1.36848 * 119.99585 * 0.02639 * 9 8 7 11 11 H 1.07994 * 120.00617 * 359.97438 * 10 9 8 12 12 C 1.38791 * 119.99503 * 179.97438 * 10 9 8 13 13 N 1.31589 * 120.00653 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99804 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47411 * 60.00430 * 14 12 10 16 16 H 1.48508 * 109.46924 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47324 * 299.99831 * 14 12 10 18 18 C 1.39076 * 119.82205 * 359.71006 * 8 7 6 19 19 C 1.38050 * 119.91267 * 359.97438 * 18 8 7 20 20 H 1.08992 * 109.47459 * 59.99744 * 1 2 3 21 21 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47033 * 299.99847 * 1 2 3 23 23 H 1.09001 * 109.47083 * 63.95813 * 3 2 1 24 24 H 1.08995 * 109.47328 * 183.95069 * 3 2 1 25 25 H 1.08993 * 109.47494 * 303.95726 * 3 2 1 26 26 H 1.09002 * 109.46783 * 186.04686 * 4 2 1 27 27 H 1.09005 * 109.46676 * 306.04728 * 4 2 1 28 28 H 1.08000 * 119.95420 * 359.97438 * 6 5 4 29 29 H 1.07994 * 120.04596 * 180.25742 * 7 6 5 30 30 H 0.96991 * 119.99720 * 180.02562 * 9 8 7 31 31 H 0.96997 * 120.00753 * 179.97438 * 13 12 10 32 32 H 1.07998 * 120.04565 * 179.97438 * 18 8 7 33 33 H 1.07998 * 119.96188 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6370 -2.2204 0.9729 6 6 0.4526 -2.7029 1.5000 7 6 0.1178 -4.0334 1.3464 8 6 0.9789 -4.8915 0.6707 9 7 0.6479 -6.2362 0.5192 10 6 -0.5260 -6.7142 1.0351 11 1 -1.1956 -6.0491 1.5600 12 6 -0.8559 -8.0538 0.8837 13 7 -0.0398 -8.8643 0.2446 14 14 -2.4587 -8.7062 1.5873 15 1 -3.6003 -7.9838 0.9710 16 1 -2.5739 -10.1573 1.2935 17 1 -2.4757 -8.4965 3.0573 18 6 2.1714 -4.4037 0.1471 19 6 2.4957 -3.0705 0.2994 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.7044 1.8723 0.9233 24 1 3.0827 1.3433 -0.0708 25 1 1.5898 1.9163 -0.8523 26 1 3.0798 -0.6611 1.1756 27 1 1.5611 -0.3872 2.0628 28 1 -0.2130 -2.0369 2.0291 29 1 -0.8090 -4.4084 1.7546 30 1 1.2496 -6.8335 0.0481 31 1 -0.2702 -9.8006 0.1391 32 1 2.8429 -5.0670 -0.3778 33 1 3.4214 -2.6908 -0.1072 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689455767.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:20 Heat of formation + Delta-G solvation = 29.200182 kcal Electronic energy + Delta-G solvation = -14352.715102 eV Core-core repulsion = 11992.065208 eV Total energy + Delta-G solvation = -2360.649894 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.68239 -36.90396 -34.78209 -31.95615 -29.90714 -29.27656 -27.33144 -25.87503 -24.20450 -21.70298 -21.62563 -19.81961 -17.60099 -16.49852 -15.23350 -15.10850 -15.00106 -14.57611 -14.10961 -13.55975 -13.03403 -12.71647 -12.42525 -12.29452 -12.14404 -11.84258 -11.57536 -11.40995 -11.25163 -11.11524 -10.67033 -10.37499 -10.24281 -10.06082 -9.67681 -8.67330 -8.08670 -7.89631 -6.62445 -6.53175 -3.71224 2.51766 2.57879 3.17409 3.18368 3.19368 4.07325 4.29291 4.81646 5.25256 5.31245 5.33664 5.39742 5.50875 5.59723 5.76530 5.84648 5.89373 5.98404 6.05001 6.05845 6.25959 6.44044 6.69661 6.95912 7.11100 7.22299 7.28592 7.33178 7.51533 7.57589 7.72111 7.78195 8.16284 8.79051 9.39989 9.59013 10.63854 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.054843 B = 0.005769 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.422786 B = 4852.107502 C = 5182.278903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.543 5.543 3 C 0.025 3.975 4 C 0.117 3.883 5 C -0.214 4.214 6 C -0.053 4.053 7 C -0.225 4.225 8 C 0.213 3.787 9 N -0.564 5.564 10 C -0.300 4.300 11 H 0.100 0.900 12 C 0.018 3.982 13 N -0.896 5.896 14 Si 0.931 3.069 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.273 1.273 18 C -0.244 4.244 19 C -0.036 4.036 20 H 0.058 0.942 21 H 0.080 0.920 22 H 0.017 0.983 23 H 0.018 0.982 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.026 0.974 28 H 0.096 0.904 29 H 0.112 0.888 30 H 0.399 0.601 31 H 0.274 0.726 32 H 0.102 0.898 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.640 12.375 0.984 12.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.267 5.267 3 C -0.124 4.124 4 C -0.009 4.009 5 C -0.219 4.219 6 C -0.073 4.073 7 C -0.249 4.249 8 C 0.092 3.908 9 N -0.166 5.166 10 C -0.430 4.430 11 H 0.118 0.882 12 C -0.184 4.184 13 N -0.533 5.533 14 Si 0.757 3.243 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.198 1.198 18 C -0.269 4.269 19 C -0.056 4.056 20 H 0.077 0.923 21 H 0.099 0.901 22 H 0.036 0.964 23 H 0.037 0.963 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.044 0.956 28 H 0.114 0.886 29 H 0.130 0.870 30 H 0.233 0.767 31 H 0.084 0.916 32 H 0.120 0.880 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.566 11.682 0.568 11.800 hybrid contribution -0.828 -0.308 0.808 1.198 sum 0.738 11.373 1.376 11.480 Atomic orbital electron populations 1.22412 0.87643 1.03085 0.99313 1.62087 1.08047 1.12316 1.44261 1.22361 1.00509 0.89732 0.99799 1.20752 0.98735 0.91457 0.89967 1.18787 0.98640 0.93600 1.10870 1.20454 0.95038 0.94439 0.97378 1.20374 1.01799 0.93311 1.09453 1.17885 0.93160 0.85025 0.94690 1.41011 1.20094 1.04634 1.50885 1.19670 0.97159 0.93779 1.32386 0.88192 1.25267 0.99609 0.95957 0.97606 1.69671 1.36901 1.05822 1.40943 0.85911 0.81165 0.77891 0.79305 1.19816 1.20775 1.19834 1.20229 0.98725 0.96185 1.11749 1.20300 0.97338 0.92360 0.95600 0.92274 0.90089 0.96439 0.96312 0.91744 0.91923 0.91444 0.95552 0.88622 0.86972 0.76681 0.91595 0.88018 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.26 60.07 0.56 0.88 16 2 N -0.54 -7.93 5.01 -252.72 -1.27 -9.19 16 3 C 0.02 0.28 9.57 60.06 0.57 0.85 16 4 C 0.12 1.79 5.12 -4.98 -0.03 1.76 16 5 C -0.21 -3.89 4.89 -104.55 -0.51 -4.41 16 6 C -0.05 -1.01 7.90 -39.62 -0.31 -1.33 16 7 C -0.23 -4.91 9.30 -39.34 -0.37 -5.27 16 8 C 0.21 4.94 6.62 -83.84 -0.55 4.39 16 9 N -0.56 -14.27 5.43 -9.60 -0.05 -14.32 16 10 C -0.30 -7.86 9.56 -15.11 -0.14 -8.00 16 11 H 0.10 2.52 5.68 -52.49 -0.30 2.22 16 12 C 0.02 0.47 5.50 -17.45 -0.10 0.38 16 13 N -0.90 -24.36 13.05 55.49 0.72 -23.64 16 14 Si 0.93 20.15 29.55 -169.99 -5.02 15.12 16 15 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 16 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 18 C -0.24 -5.13 9.90 -39.34 -0.39 -5.52 16 19 C -0.04 -0.69 9.69 -39.61 -0.38 -1.07 16 20 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.08 1.28 5.91 -51.93 -0.31 0.97 16 22 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 23 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 24 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.95 8.01 -51.93 -0.42 0.54 16 27 H 0.03 0.39 8.06 -51.93 -0.42 -0.03 16 28 H 0.10 1.61 8.00 -52.49 -0.42 1.19 16 29 H 0.11 2.46 5.96 -52.49 -0.31 2.15 16 30 H 0.40 10.24 7.90 -40.82 -0.32 9.91 16 31 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 33 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 276.29 15.07 4.16 4.16 Total: -1.00 -27.11 276.29 -7.69 -34.81 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -4.59 Total: 10.39 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -1.65 Total: -17.33 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.59 Total: -47.16 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.11 -7.69 -34.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689455767.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.006 kcal (2) G-P(sol) polarization free energy of solvation -27.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds