Wall clock time and date at job start Mon Mar 30 2020 03:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.46905 * 110.99995 * 123.95456 * 2 1 3 5 5 C 1.50695 * 109.46944 * 66.04457 * 4 2 1 6 6 C 1.38328 * 119.91294 * 269.72382 * 5 4 2 7 7 C 1.38054 * 120.08965 * 179.72887 * 6 5 4 8 8 C 1.39082 * 119.90762 * 0.56685 * 7 6 5 9 9 N 1.39302 * 120.08940 * 179.68246 * 8 7 6 10 10 C 1.36848 * 119.99585 * 0.02639 * 9 8 7 11 11 H 1.07994 * 120.00617 * 359.97438 * 10 9 8 12 12 C 1.38791 * 119.99503 * 179.97438 * 10 9 8 13 13 N 1.31589 * 120.00653 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99804 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47411 * 60.00430 * 14 12 10 16 16 H 1.48508 * 109.46924 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47324 * 299.99831 * 14 12 10 18 18 C 1.39076 * 119.82205 * 359.71006 * 8 7 6 19 19 C 1.38050 * 119.91267 * 359.97438 * 18 8 7 20 20 H 1.08992 * 109.47459 * 59.99744 * 1 2 3 21 21 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47033 * 299.99847 * 1 2 3 23 23 H 1.09001 * 109.47083 * 63.95813 * 3 2 1 24 24 H 1.08995 * 109.47328 * 183.95069 * 3 2 1 25 25 H 1.08993 * 109.47494 * 303.95726 * 3 2 1 26 26 H 1.09002 * 109.46783 * 186.04686 * 4 2 1 27 27 H 1.09005 * 109.46676 * 306.04728 * 4 2 1 28 28 H 1.08000 * 119.95420 * 359.97438 * 6 5 4 29 29 H 1.07994 * 120.04596 * 180.25742 * 7 6 5 30 30 H 0.96991 * 119.99720 * 180.02562 * 9 8 7 31 31 H 0.96997 * 120.00753 * 179.97438 * 13 12 10 32 32 H 1.07998 * 120.04565 * 179.97438 * 18 8 7 33 33 H 1.07998 * 119.96188 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6370 -2.2204 0.9729 6 6 0.4526 -2.7029 1.5000 7 6 0.1178 -4.0334 1.3464 8 6 0.9789 -4.8915 0.6707 9 7 0.6479 -6.2362 0.5192 10 6 -0.5260 -6.7142 1.0351 11 1 -1.1956 -6.0491 1.5600 12 6 -0.8559 -8.0538 0.8837 13 7 -0.0398 -8.8643 0.2446 14 14 -2.4587 -8.7062 1.5873 15 1 -3.6003 -7.9838 0.9710 16 1 -2.5739 -10.1573 1.2935 17 1 -2.4757 -8.4965 3.0573 18 6 2.1714 -4.4037 0.1471 19 6 2.4957 -3.0705 0.2994 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.7044 1.8723 0.9233 24 1 3.0827 1.3433 -0.0708 25 1 1.5898 1.9163 -0.8523 26 1 3.0798 -0.6611 1.1756 27 1 1.5611 -0.3872 2.0628 28 1 -0.2130 -2.0369 2.0291 29 1 -0.8090 -4.4084 1.7546 30 1 1.2496 -6.8335 0.0481 31 1 -0.2702 -9.8006 0.1391 32 1 2.8429 -5.0670 -0.3778 33 1 3.4214 -2.6908 -0.1072 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689455767.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:20 Heat of formation + Delta-G solvation = 12.495601 kcal Electronic energy + Delta-G solvation = -14353.439468 eV Core-core repulsion = 11992.065208 eV Total energy + Delta-G solvation = -2361.374259 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.26286 -38.23297 -36.42537 -33.75054 -31.54081 -30.81335 -28.34381 -27.45531 -25.83696 -23.36180 -22.88601 -21.33992 -19.45753 -18.21615 -16.65774 -16.45781 -16.22704 -16.10135 -15.65563 -15.00437 -14.61560 -14.21724 -14.02224 -14.00910 -13.39310 -13.10222 -12.93613 -12.81064 -12.50947 -12.46257 -12.35212 -12.10229 -11.73972 -11.73164 -11.34782 -10.50033 -9.54028 -9.15680 -8.43183 -8.38579 -5.68221 0.87041 0.95115 1.40955 1.49979 1.51823 2.30070 2.88750 3.26567 3.51978 3.58449 4.16797 4.21725 4.39518 4.42717 4.51912 4.58638 4.72161 4.80661 4.85126 4.90120 5.05390 5.08576 5.15151 5.25459 5.37220 5.48323 5.77150 5.86803 5.98474 6.05704 6.22530 6.30078 6.52373 6.86546 7.57371 7.69977 8.75751 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.054843 B = 0.005769 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.422786 B = 4852.107502 C = 5182.278903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.561 5.561 3 C 0.025 3.975 4 C 0.119 3.881 5 C -0.193 4.193 6 C -0.051 4.051 7 C -0.241 4.241 8 C 0.192 3.808 9 N -0.595 5.595 10 C -0.316 4.316 11 H 0.101 0.899 12 C -0.035 4.035 13 N -0.937 5.937 14 Si 0.996 3.004 15 H -0.267 1.267 16 H -0.281 1.281 17 H -0.267 1.267 18 C -0.251 4.251 19 C -0.039 4.039 20 H 0.071 0.929 21 H 0.057 0.943 22 H 0.030 0.970 23 H 0.028 0.972 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.038 0.962 28 H 0.121 0.879 29 H 0.103 0.897 30 H 0.389 0.611 31 H 0.272 0.728 32 H 0.107 0.893 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.845 15.249 1.478 15.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.285 5.285 3 C -0.122 4.122 4 C -0.008 4.008 5 C -0.197 4.197 6 C -0.070 4.070 7 C -0.266 4.266 8 C 0.076 3.924 9 N -0.201 5.201 10 C -0.445 4.445 11 H 0.119 0.881 12 C -0.232 4.232 13 N -0.577 5.577 14 Si 0.820 3.180 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.192 1.192 18 C -0.275 4.275 19 C -0.058 4.058 20 H 0.090 0.910 21 H 0.075 0.925 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.056 0.944 28 H 0.139 0.861 29 H 0.121 0.879 30 H 0.222 0.778 31 H 0.081 0.919 32 H 0.125 0.875 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.782 14.645 1.073 14.792 hybrid contribution -0.741 -0.814 0.643 1.274 sum 1.041 13.831 1.716 13.976 Atomic orbital electron populations 1.22392 0.87508 1.01896 1.00638 1.62012 1.08376 1.14335 1.43803 1.22416 1.01100 0.87912 1.00819 1.20756 0.99973 0.89177 0.90910 1.19289 0.97241 0.95544 1.07642 1.20732 0.95777 0.93512 0.97002 1.20524 1.01601 0.94544 1.09896 1.18321 0.94225 0.84712 0.95113 1.40962 1.20426 1.05301 1.53393 1.19925 0.97732 0.94268 1.32603 0.88145 1.26122 1.02831 0.96007 0.98273 1.69789 1.38803 1.05880 1.43260 0.84915 0.77309 0.77079 0.78698 1.19215 1.20653 1.19186 1.20488 0.98136 0.97446 1.11473 1.20670 0.98554 0.91441 0.95175 0.91013 0.92453 0.95171 0.95301 0.90744 0.90845 0.89768 0.94412 0.86071 0.87895 0.77761 0.91852 0.87530 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.26 127.69 1.18 1.77 16 2 N -0.56 -14.14 5.01 -953.47 -4.78 -18.92 16 3 C 0.03 0.47 9.57 127.69 1.22 1.69 16 4 C 0.12 3.11 5.12 85.55 0.44 3.54 16 5 C -0.19 -6.44 4.89 -19.82 -0.10 -6.54 16 6 C -0.05 -1.83 7.90 22.25 0.18 -1.66 16 7 C -0.24 -10.52 9.30 22.43 0.21 -10.31 16 8 C 0.19 9.08 6.62 38.36 0.25 9.33 16 9 N -0.59 -31.41 5.43 -184.30 -1.00 -32.42 16 10 C -0.32 -17.17 9.56 84.04 0.80 -16.36 16 11 H 0.10 5.25 5.68 -2.91 -0.02 5.23 16 12 C -0.03 -1.86 5.50 84.86 0.47 -1.39 16 13 N -0.94 -53.10 13.05 21.65 0.28 -52.81 16 14 Si 1.00 42.34 29.55 68.60 2.03 44.36 16 15 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 16 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 17 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 18 C -0.25 -10.44 9.90 22.43 0.22 -10.22 16 19 C -0.04 -1.38 9.69 22.25 0.22 -1.17 16 20 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 21 H 0.06 1.67 5.91 -2.38 -0.01 1.65 16 22 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.03 0.48 8.14 -2.39 -0.02 0.47 16 24 H 0.07 1.23 8.12 -2.39 -0.02 1.22 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.08 1.97 8.01 -2.39 -0.02 1.95 16 27 H 0.04 0.93 8.06 -2.38 -0.02 0.91 16 28 H 0.12 3.73 8.00 -2.91 -0.02 3.71 16 29 H 0.10 4.61 5.96 -2.91 -0.02 4.60 16 30 H 0.39 21.17 7.90 -92.71 -0.73 20.44 16 31 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 32 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 33 H 0.13 3.84 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -59.16 276.29 1.99 -57.17 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.36 Total: 33.93 kcal Atomic # 6 Polarization: -36.41 SS G_CDS: 5.09 Total: -31.32 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -5.50 Total: -104.15 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -59.16 1.99 -57.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689455767.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.670 kcal (2) G-P(sol) polarization free energy of solvation -59.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds