Wall clock time and date at job start Mon Mar 30 2020 03:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47448 * 2 1 4 4 C 1.53002 * 109.46893 * 240.00120 * 2 1 3 5 5 C 1.50706 * 109.47153 * 174.99718 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 N 1.46900 * 109.47181 * 120.00804 * 2 1 3 14 14 C 1.46900 * 110.99503 * 274.99918 * 13 2 1 15 15 C 1.50700 * 109.46994 * 180.02562 * 14 13 2 16 16 C 1.38224 * 119.62193 * 94.99974 * 15 14 13 17 17 C 1.38635 * 119.16204 * 179.97438 * 16 15 14 18 18 C 1.38665 * 118.41979 * 359.97438 * 17 16 15 19 19 C 1.38182 * 119.16573 * 0.02562 * 18 17 16 20 20 N 1.31859 * 119.61347 * 274.72270 * 15 14 13 21 21 H 1.09001 * 109.46894 * 299.99661 * 1 2 3 22 22 H 1.09002 * 109.46592 * 59.99548 * 1 2 3 23 23 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47178 * 55.00508 * 4 2 1 25 25 H 1.08993 * 109.47411 * 295.00191 * 4 2 1 26 26 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 27 27 H 1.00898 * 110.99992 * 38.94832 * 13 2 1 28 28 H 1.09000 * 109.47080 * 299.99348 * 14 13 2 29 29 H 1.08999 * 109.47391 * 59.99755 * 14 13 2 30 30 H 1.07994 * 120.41912 * 359.95573 * 16 15 14 31 31 H 1.07998 * 120.78545 * 179.97438 * 17 16 15 32 32 H 1.08001 * 120.41908 * 180.02562 * 18 17 16 33 33 H 1.08004 * 119.61623 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3129 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1925 -2.3584 8 7 3.5768 -1.8410 -3.2976 9 14 6.0921 -1.0613 -2.4368 10 1 6.5876 -1.7663 -3.6462 11 1 6.4852 0.3694 -2.5020 12 1 6.6836 -1.6824 -1.2246 13 7 2.0197 -0.6927 1.1993 14 6 2.0825 0.2224 2.3468 15 6 2.5886 -0.5218 3.5556 16 6 3.9344 -0.4822 3.8683 17 6 4.3895 -1.1699 4.9828 18 6 3.4697 -1.8743 5.7447 19 6 2.1396 -1.8681 5.3703 20 7 1.7414 -1.1987 4.3058 21 1 -0.3633 0.5138 0.8900 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.6054 -0.2616 -2.1370 25 1 1.7516 -1.7714 -1.2057 26 1 2.6101 -1.9094 -3.2568 27 1 1.4496 -1.4980 1.4099 28 1 2.7590 1.0459 2.1182 29 1 1.0871 0.6161 2.5525 30 1 4.6227 0.0771 3.2521 31 1 5.4355 -1.1571 5.2511 32 1 3.7888 -2.4210 6.6197 33 1 1.4169 -2.4140 5.9587 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695842136.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:49 Heat of formation + Delta-G solvation = 20.854052 kcal Electronic energy + Delta-G solvation = -14401.870791 eV Core-core repulsion = 12040.858981 eV Total energy + Delta-G solvation = -2361.011810 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.06370 -36.77793 -33.36341 -32.36571 -31.90128 -29.39185 -26.87435 -25.20340 -23.41206 -22.80210 -21.52548 -19.96085 -16.95052 -16.51770 -16.15690 -15.38669 -15.06549 -14.17664 -13.71792 -13.56975 -13.52327 -13.09992 -12.83557 -12.52503 -12.02399 -11.67507 -11.45893 -11.13946 -11.00634 -10.67205 -10.28430 -10.01294 -9.80740 -9.61431 -9.33725 -8.92303 -8.42113 -8.17422 -7.60126 -6.17455 -3.82084 1.18716 1.36170 3.51812 3.55361 3.73281 3.84285 4.37861 4.68093 4.80926 4.87256 5.03823 5.14697 5.23841 5.57119 5.59461 5.67386 5.70132 5.82966 5.88951 5.96686 5.99726 6.21878 6.28982 6.40391 6.57173 6.77694 6.90714 7.35037 7.45498 7.87075 8.02816 8.10916 8.44964 8.69200 9.08270 9.86443 11.23071 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.025698 B = 0.007537 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.322323 B = 3714.197148 C = 4530.481408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.097 3.903 3 H 0.067 0.933 4 C 0.020 3.980 5 C -0.569 4.569 6 H 0.051 0.949 7 C 0.006 3.994 8 N -0.924 5.924 9 Si 1.067 2.933 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.290 1.290 13 N -0.656 5.656 14 C 0.107 3.893 15 C 0.141 3.859 16 C -0.148 4.148 17 C -0.078 4.078 18 C -0.182 4.182 19 C 0.095 3.905 20 N -0.485 5.485 21 H 0.041 0.959 22 H 0.056 0.944 23 H 0.051 0.949 24 H 0.008 0.992 25 H 0.007 0.993 26 H 0.265 0.735 27 H 0.335 0.665 28 H 0.084 0.916 29 H 0.039 0.961 30 H 0.138 0.862 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.485 2.616 16.371 16.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.012 4.012 3 H 0.085 0.915 4 C -0.018 4.018 5 C -0.607 4.607 6 H 0.069 0.931 7 C -0.195 4.195 8 N -0.562 5.562 9 Si 0.897 3.103 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.217 1.217 13 N -0.287 5.287 14 C -0.022 4.022 15 C 0.004 3.996 16 C -0.169 4.169 17 C -0.104 4.104 18 C -0.202 4.202 19 C -0.062 4.062 20 N -0.195 5.195 21 H 0.060 0.940 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.027 0.973 25 H 0.025 0.975 26 H 0.076 0.924 27 H 0.153 0.847 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.155 0.845 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.368 2.281 15.071 15.247 hybrid contribution -1.366 0.401 1.484 2.056 sum -1.734 2.682 16.555 16.860 Atomic orbital electron populations 1.22573 0.99342 1.01328 1.00802 1.21650 0.89918 0.98081 0.91597 0.91510 1.19236 0.97343 0.94791 0.90385 1.21923 0.91589 1.37236 1.09983 0.93060 1.25764 1.06587 0.94098 0.93096 1.70782 1.10067 1.40685 1.34647 0.83566 0.74962 0.75964 0.75824 1.21112 1.21748 1.21661 1.60588 1.57973 1.08395 1.01704 1.20846 0.99427 0.94666 0.87299 1.21296 0.90050 0.93799 0.94498 1.22032 0.96735 1.00633 0.97462 1.21591 1.00037 0.94737 0.94034 1.22069 0.94894 1.01665 1.01609 1.22670 0.94420 0.95783 0.93360 1.67489 1.39313 1.07381 1.05296 0.94011 0.92487 0.93027 0.97348 0.97458 0.92425 0.84682 0.89802 0.94328 0.84457 0.84995 0.85181 0.83137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.16 9.16 37.16 0.34 -2.82 16 2 C 0.10 2.01 2.53 -67.71 -0.17 1.84 16 3 H 0.07 1.39 7.80 -51.93 -0.41 0.99 16 4 C 0.02 0.51 3.97 -27.88 -0.11 0.40 16 5 C -0.57 -16.39 8.84 -34.44 -0.30 -16.70 16 6 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 7 C 0.01 0.19 5.46 -17.82 -0.10 0.09 16 8 N -0.92 -29.11 13.65 55.43 0.76 -28.35 16 9 Si 1.07 26.20 29.90 -169.99 -5.08 21.12 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.66 -12.95 5.95 -107.99 -0.64 -13.59 16 14 C 0.11 1.78 5.79 -4.98 -0.03 1.75 16 15 C 0.14 2.24 6.29 -82.59 -0.52 1.72 16 16 C -0.15 -2.12 9.72 -39.44 -0.38 -2.50 16 17 C -0.08 -0.93 10.18 -39.28 -0.40 -1.33 16 18 C -0.18 -2.02 10.11 -39.44 -0.40 -2.42 16 19 C 0.09 1.19 11.18 -17.55 -0.20 0.99 16 20 N -0.48 -7.53 10.27 -9.47 -0.10 -7.63 16 21 H 0.04 0.65 7.45 -51.93 -0.39 0.26 16 22 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.05 0.89 8.13 -51.93 -0.42 0.47 16 24 H 0.01 0.23 8.01 -51.93 -0.42 -0.19 16 25 H 0.01 0.20 8.00 -51.93 -0.42 -0.22 16 26 H 0.27 8.34 7.22 -40.82 -0.29 8.04 16 27 H 0.34 6.58 8.46 -39.29 -0.33 6.25 16 28 H 0.08 1.34 7.95 -51.93 -0.41 0.92 16 29 H 0.04 0.61 7.44 -51.93 -0.39 0.23 16 30 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 31 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.15 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 282.93 15.07 4.26 4.26 Total: -1.00 -32.55 282.93 -7.86 -40.41 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -4.79 Total: 2.75 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -2.27 Total: -18.97 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.02 Total: -49.57 kcal Atomic # 14 Polarization: 26.20 SS G_CDS: -5.08 Total: 21.12 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.55 -7.86 -40.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695842136.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.268 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds