Wall clock time and date at job start Mon Mar 30 2020 03:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47448 * 2 1 4 4 C 1.53002 * 109.46893 * 240.00120 * 2 1 3 5 5 C 1.50706 * 109.47153 * 174.99718 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 N 1.46900 * 109.47181 * 120.00804 * 2 1 3 14 14 C 1.46900 * 110.99503 * 274.99918 * 13 2 1 15 15 C 1.50700 * 109.46994 * 180.02562 * 14 13 2 16 16 C 1.38224 * 119.62193 * 94.99974 * 15 14 13 17 17 C 1.38635 * 119.16204 * 179.97438 * 16 15 14 18 18 C 1.38665 * 118.41979 * 359.97438 * 17 16 15 19 19 C 1.38182 * 119.16573 * 0.02562 * 18 17 16 20 20 N 1.31859 * 119.61347 * 274.72270 * 15 14 13 21 21 H 1.09001 * 109.46894 * 299.99661 * 1 2 3 22 22 H 1.09002 * 109.46592 * 59.99548 * 1 2 3 23 23 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47178 * 55.00508 * 4 2 1 25 25 H 1.08993 * 109.47411 * 295.00191 * 4 2 1 26 26 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 27 27 H 1.00898 * 110.99992 * 38.94832 * 13 2 1 28 28 H 1.09000 * 109.47080 * 299.99348 * 14 13 2 29 29 H 1.08999 * 109.47391 * 59.99755 * 14 13 2 30 30 H 1.07994 * 120.41912 * 359.95573 * 16 15 14 31 31 H 1.07998 * 120.78545 * 179.97438 * 17 16 15 32 32 H 1.08001 * 120.41908 * 180.02562 * 18 17 16 33 33 H 1.08004 * 119.61623 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3129 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1925 -2.3584 8 7 3.5768 -1.8410 -3.2976 9 14 6.0921 -1.0613 -2.4368 10 1 6.5876 -1.7663 -3.6462 11 1 6.4852 0.3694 -2.5020 12 1 6.6836 -1.6824 -1.2246 13 7 2.0197 -0.6927 1.1993 14 6 2.0825 0.2224 2.3468 15 6 2.5886 -0.5218 3.5556 16 6 3.9344 -0.4822 3.8683 17 6 4.3895 -1.1699 4.9828 18 6 3.4697 -1.8743 5.7447 19 6 2.1396 -1.8681 5.3703 20 7 1.7414 -1.1987 4.3058 21 1 -0.3633 0.5138 0.8900 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.6054 -0.2616 -2.1370 25 1 1.7516 -1.7714 -1.2057 26 1 2.6101 -1.9094 -3.2568 27 1 1.4496 -1.4980 1.4099 28 1 2.7590 1.0459 2.1182 29 1 1.0871 0.6161 2.5525 30 1 4.6227 0.0771 3.2521 31 1 5.4355 -1.1571 5.2511 32 1 3.7888 -2.4210 6.6197 33 1 1.4169 -2.4140 5.9587 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695842136.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:48 Heat of formation + Delta-G solvation = -1.107452 kcal Electronic energy + Delta-G solvation = -14402.823113 eV Core-core repulsion = 12040.858981 eV Total energy + Delta-G solvation = -2361.964132 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.08262 -38.37548 -35.28256 -33.62331 -33.16785 -30.79025 -28.79207 -26.49465 -24.92438 -24.37905 -22.65694 -21.68894 -18.89905 -17.75225 -17.18610 -16.58066 -16.44120 -15.64118 -15.61146 -15.20043 -14.79751 -14.55925 -14.11496 -13.70161 -13.48672 -13.28247 -12.99835 -12.90525 -12.50780 -12.49064 -12.08457 -11.92300 -11.45434 -10.79032 -10.60031 -10.45701 -10.38727 -9.94804 -9.13070 -8.55158 -6.20355 0.18643 0.39683 1.53791 1.63579 1.81957 2.63708 2.79031 3.25902 3.33217 3.59619 3.81345 4.04960 4.10020 4.21413 4.27335 4.34193 4.44457 4.54495 4.58664 4.78874 4.83498 4.88663 5.07643 5.11928 5.22599 5.28378 5.31916 5.44958 5.82407 6.12597 6.26612 6.35427 6.50624 6.74768 7.07107 7.57305 8.85771 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.025698 B = 0.007537 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.322323 B = 3714.197148 C = 4530.481408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 H 0.065 0.935 4 C 0.022 3.978 5 C -0.575 4.575 6 H 0.050 0.950 7 C -0.050 4.050 8 N -0.950 5.950 9 Si 1.116 2.884 10 H -0.288 1.288 11 H -0.269 1.269 12 H -0.274 1.274 13 N -0.672 5.672 14 C 0.115 3.885 15 C 0.114 3.886 16 C -0.167 4.167 17 C -0.079 4.079 18 C -0.171 4.171 19 C 0.083 3.917 20 N -0.512 5.512 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.049 0.951 24 H -0.009 1.009 25 H -0.017 1.017 26 H 0.251 0.749 27 H 0.333 0.667 28 H 0.084 0.916 29 H 0.044 0.956 30 H 0.136 0.864 31 H 0.162 0.838 32 H 0.169 0.831 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.455 2.733 18.642 18.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.004 4.004 3 H 0.083 0.917 4 C -0.016 4.016 5 C -0.614 4.614 6 H 0.069 0.931 7 C -0.245 4.245 8 N -0.590 5.590 9 Si 0.938 3.062 10 H -0.213 1.213 11 H -0.194 1.194 12 H -0.199 1.199 13 N -0.303 5.303 14 C -0.015 4.015 15 C -0.023 4.023 16 C -0.187 4.187 17 C -0.105 4.105 18 C -0.190 4.190 19 C -0.074 4.074 20 N -0.222 5.222 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.068 0.932 24 H 0.009 0.991 25 H 0.001 0.999 26 H 0.061 0.939 27 H 0.151 0.849 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.154 0.846 31 H 0.180 0.820 32 H 0.186 0.814 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 0.642 2.419 17.363 17.543 hybrid contribution -1.708 0.328 0.881 1.950 sum -1.066 2.746 18.245 18.481 Atomic orbital electron populations 1.22422 0.96629 1.01693 1.02160 1.21370 0.92073 0.96970 0.90033 0.91654 1.19167 0.96174 0.93748 0.92497 1.22280 0.93145 1.36375 1.09560 0.93137 1.27315 1.11045 0.93395 0.92765 1.70922 1.09336 1.42720 1.36007 0.82951 0.69729 0.77291 0.76242 1.21349 1.19371 1.19938 1.60439 1.58139 1.09121 1.02567 1.20776 0.99833 0.94178 0.86695 1.21169 0.90916 0.95321 0.94856 1.22167 0.96195 1.01579 0.98758 1.21995 1.01804 0.93693 0.92976 1.22504 0.93986 1.00446 1.02074 1.23258 0.96082 0.95337 0.92747 1.67433 1.39987 1.08266 1.06519 0.91626 0.92074 0.93176 0.99129 0.99916 0.93947 0.84921 0.89755 0.93763 0.84603 0.82039 0.81371 0.80401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.82 9.16 71.98 0.66 -5.16 16 2 C 0.11 4.39 2.53 44.92 0.11 4.50 16 3 H 0.07 2.73 7.80 -2.39 -0.02 2.71 16 4 C 0.02 1.15 3.97 29.85 0.12 1.27 16 5 C -0.58 -33.60 8.84 25.60 0.23 -33.38 16 6 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 7 C -0.05 -3.00 5.46 84.65 0.46 -2.54 16 8 N -0.95 -61.17 13.65 21.45 0.29 -60.87 16 9 Si 1.12 52.38 29.90 68.60 2.05 54.43 16 10 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 11 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 13 N -0.67 -26.64 5.95 -495.57 -2.95 -29.59 16 14 C 0.11 3.76 5.79 85.56 0.50 4.26 16 15 C 0.11 3.55 6.29 42.55 0.27 3.82 16 16 C -0.17 -4.57 9.72 22.36 0.22 -4.35 16 17 C -0.08 -1.66 10.18 22.47 0.23 -1.43 16 18 C -0.17 -3.17 10.11 22.36 0.23 -2.94 16 19 C 0.08 1.87 11.18 84.67 0.95 2.82 16 20 N -0.51 -15.30 10.27 -183.88 -1.89 -17.19 16 21 H 0.06 1.94 7.45 -2.39 -0.02 1.92 16 22 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 24 H -0.01 -0.53 8.01 -2.39 -0.02 -0.55 16 25 H -0.02 -1.01 8.00 -2.39 -0.02 -1.03 16 26 H 0.25 16.39 7.22 -92.71 -0.67 15.72 16 27 H 0.33 13.22 8.46 -89.70 -0.76 12.46 16 28 H 0.08 2.68 7.95 -2.39 -0.02 2.67 16 29 H 0.04 1.38 7.44 -2.39 -0.02 1.36 16 30 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 31 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 33 H 0.18 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -70.98 282.93 1.89 -69.09 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.43 Total: 17.27 kcal Atomic # 6 Polarization: -37.09 SS G_CDS: 3.96 Total: -33.13 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -4.55 Total: -107.66 kcal Atomic # 14 Polarization: 52.38 SS G_CDS: 2.05 Total: 54.43 kcal Total: -70.98 1.89 -69.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695842136.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.978 kcal (2) G-P(sol) polarization free energy of solvation -70.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds