Wall clock time and date at job start Mon Mar 30 2020 02:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47216 * 2 1 4 4 H 1.09001 * 109.46838 * 305.50442 * 3 2 1 5 5 C 1.50705 * 109.46653 * 185.51318 * 3 2 1 6 6 H 1.08004 * 119.99419 * 245.57192 * 5 3 2 7 7 C 1.37867 * 120.00279 * 65.58272 * 5 3 2 8 8 N 1.31518 * 120.00004 * 197.04234 * 7 5 3 9 9 Si 1.86805 * 120.00304 * 17.04116 * 7 5 3 10 10 H 1.48496 * 109.47193 * 180.02562 * 9 7 5 11 11 H 1.48494 * 109.47108 * 300.00255 * 9 7 5 12 12 H 1.48502 * 109.46698 * 60.00647 * 9 7 5 13 13 N 1.46490 * 109.47377 * 65.51175 * 3 2 1 14 14 C 1.36889 * 126.39986 * 59.68607 * 13 3 2 15 15 C 1.34666 * 106.81715 * 179.84692 * 14 13 3 16 16 N 1.34131 * 108.02371 * 0.41931 * 15 14 13 17 17 C 1.30497 * 109.25187 * 359.73613 * 16 15 14 18 18 C 1.50706 * 125.64868 * 179.97438 * 17 16 15 19 19 C 1.53004 * 117.49622 * 8.78540 * 18 17 16 20 20 C 1.53003 * 117.49551 * 300.12815 * 18 17 16 21 21 H 1.08994 * 109.47212 * 300.00657 * 1 2 3 22 22 H 1.09008 * 109.46963 * 60.00169 * 1 2 3 23 23 H 1.09000 * 109.47428 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47031 * 239.99407 * 2 1 3 25 25 H 1.09001 * 109.47138 * 119.99499 * 2 1 3 26 26 H 0.96997 * 120.00191 * 354.55214 * 8 7 5 27 27 H 1.08003 * 126.58966 * 359.97438 * 14 13 3 28 28 H 1.08004 * 125.98934 * 180.12093 * 15 14 13 29 29 H 1.08994 * 115.55074 * 154.45917 * 18 17 16 30 30 H 1.08993 * 117.49715 * 0.02562 * 19 18 17 31 31 H 1.08998 * 117.49314 * 145.02543 * 19 18 17 32 32 H 1.08996 * 117.49705 * 214.98072 * 20 18 17 33 33 H 1.08999 * 117.50136 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5984 1.9840 -0.8366 5 6 3.5409 1.4446 -0.1365 6 1 4.1563 1.8046 0.6747 7 6 4.1282 0.9870 -1.2969 8 7 5.4048 0.6709 -1.3074 9 14 3.1108 0.8159 -2.8542 10 1 3.9700 0.3075 -3.9535 11 1 1.9973 -0.1371 -2.6158 12 1 2.5563 2.1410 -3.2312 13 7 1.6631 2.0938 1.2569 14 6 2.0229 1.6977 2.5168 15 6 1.4662 2.5739 3.3746 16 7 0.7774 3.4750 2.6586 17 6 0.8908 3.1937 1.3894 18 6 0.2633 3.9676 0.2587 19 6 -0.4060 5.3003 0.6008 20 6 -1.2623 4.0830 0.2427 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.9512 0.8337 -0.5227 27 1 2.6371 0.8472 2.7734 28 1 1.5545 2.5519 4.4508 29 1 0.7724 3.8921 -0.7021 30 1 -0.3921 5.6173 1.6435 31 1 -0.3376 6.1013 -0.1352 32 1 -1.7568 4.0837 -0.7286 33 1 -1.8121 3.5987 1.0497 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704263132.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:51 Heat of formation + Delta-G solvation = 56.354576 kcal Electronic energy + Delta-G solvation = -15280.422936 eV Core-core repulsion = 12920.950545 eV Total energy + Delta-G solvation = -2359.472391 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.96352 -37.83986 -37.32169 -34.41022 -32.49171 -30.20650 -29.13022 -24.77004 -24.23710 -23.36623 -23.09892 -21.57075 -19.98948 -19.65273 -18.17969 -16.53264 -16.31976 -15.67883 -15.33014 -15.06638 -14.80004 -14.62319 -14.47231 -14.08076 -13.54890 -12.96215 -12.73999 -12.54429 -12.35023 -12.33011 -11.81212 -11.63124 -11.57592 -11.37945 -11.27256 -10.90070 -10.58522 -10.32475 -9.10388 -8.89530 -6.58427 1.26357 1.41273 1.48587 1.65111 2.15995 2.17422 2.38994 2.90175 3.07323 3.51275 3.84016 3.94590 4.07959 4.19068 4.22304 4.29954 4.41991 4.50541 4.63097 4.79494 4.81352 4.92330 4.99605 5.03810 5.14964 5.17258 5.32995 5.34363 5.45846 5.79770 5.84426 5.96120 6.24773 6.58457 7.21708 7.25217 8.46866 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.026767 B = 0.011110 C = 0.010009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.808092 B = 2519.722540 C = 2796.841161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.242 3.758 4 H 0.059 0.941 5 C -0.622 4.622 6 H 0.016 0.984 7 C -0.006 4.006 8 N -0.922 5.922 9 Si 1.071 2.929 10 H -0.284 1.284 11 H -0.229 1.229 12 H -0.256 1.256 13 N -0.421 5.421 14 C -0.059 4.059 15 C -0.055 4.055 16 N -0.521 5.521 17 C 0.214 3.786 18 C -0.114 4.114 19 C -0.142 4.142 20 C -0.139 4.139 21 H 0.038 0.962 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.049 0.951 26 H 0.254 0.746 27 H 0.162 0.838 28 H 0.187 0.813 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.341 2.465 -0.072 13.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.139 3.861 4 H 0.077 0.923 5 C -0.660 4.660 6 H 0.035 0.965 7 C -0.206 4.206 8 N -0.556 5.556 9 Si 0.889 3.111 10 H -0.210 1.210 11 H -0.153 1.153 12 H -0.180 1.180 13 N -0.099 5.099 14 C -0.195 4.195 15 C -0.204 4.204 16 N -0.241 5.241 17 C -0.048 4.048 18 C -0.134 4.134 19 C -0.180 4.180 20 C -0.177 4.177 21 H 0.057 0.943 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.095 0.905 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.180 0.820 28 H 0.204 0.796 29 H 0.133 0.867 30 H 0.111 0.889 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.637 2.509 -1.440 13.941 hybrid contribution 1.708 -0.325 1.891 2.568 sum -11.930 2.184 0.451 12.136 Atomic orbital electron populations 1.21749 0.94444 1.02322 1.01467 1.22226 0.96359 0.96436 1.02404 1.19447 0.94534 0.91286 0.80817 0.92294 1.22218 0.91233 1.49324 1.03222 0.96514 1.27237 0.97731 0.91216 1.04426 1.70987 1.08599 1.42336 1.33678 0.83816 0.75611 0.79720 0.71932 1.21013 1.15301 1.18022 1.45593 1.35227 1.21324 1.07790 1.22691 1.07627 1.04779 0.84363 1.22509 1.02665 0.94914 1.00289 1.70026 1.24788 1.27658 1.01617 1.22597 0.98340 0.90063 0.93772 1.20238 0.96816 1.01790 0.94521 1.23005 1.01153 0.90435 1.03379 1.23076 0.89579 1.00896 1.04187 0.94261 0.91718 0.91045 0.90536 0.93265 0.93709 0.82010 0.79590 0.86701 0.88894 0.85928 0.85427 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.49 9.80 71.98 0.71 -3.78 16 2 C -0.14 -5.35 5.08 30.59 0.16 -5.20 16 3 C 0.24 10.78 1.88 44.25 0.08 10.86 16 4 H 0.06 2.52 5.42 -2.39 -0.01 2.51 16 5 C -0.62 -34.04 8.81 25.60 0.23 -33.81 16 6 H 0.02 1.04 7.93 -2.91 -0.02 1.02 16 7 C -0.01 -0.31 5.31 84.65 0.45 0.14 16 8 N -0.92 -55.40 13.69 21.44 0.29 -55.11 16 9 Si 1.07 44.73 26.29 68.60 1.80 46.53 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.23 -8.12 5.71 99.48 0.57 -7.55 16 12 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 13 N -0.42 -18.31 2.07 -495.79 -1.03 -19.33 16 14 C -0.06 -2.46 10.53 83.08 0.87 -1.59 16 15 C -0.06 -2.15 11.87 83.52 0.99 -1.16 16 16 N -0.52 -21.35 10.81 -188.12 -2.03 -23.38 16 17 C 0.21 8.69 7.44 138.13 1.03 9.72 16 18 C -0.11 -3.71 5.76 -11.54 -0.07 -3.78 16 19 C -0.14 -3.69 10.14 30.62 0.31 -3.38 16 20 C -0.14 -3.42 10.24 30.62 0.31 -3.11 16 21 H 0.04 1.30 7.77 -2.39 -0.02 1.28 16 22 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 23 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.08 3.04 4.81 -2.39 -0.01 3.03 16 25 H 0.05 2.01 7.79 -2.39 -0.02 2.00 16 26 H 0.25 15.68 8.73 -92.71 -0.81 14.87 16 27 H 0.16 6.52 8.06 -2.91 -0.02 6.50 16 28 H 0.19 5.88 8.06 -2.91 -0.02 5.85 16 29 H 0.12 3.76 7.26 -2.39 -0.02 3.74 16 30 H 0.09 2.67 7.88 -2.39 -0.02 2.66 16 31 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.13 2.33 8.14 -2.39 -0.02 2.32 16 33 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -65.19 274.05 5.02 -60.17 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 0.91 Total: 26.21 kcal Atomic # 6 Polarization: -40.16 SS G_CDS: 5.07 Total: -35.09 kcal Atomic # 7 Polarization: -95.06 SS G_CDS: -2.77 Total: -97.82 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.80 Total: 46.53 kcal Total: -65.19 5.02 -60.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704263132.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.525 kcal (2) G-P(sol) polarization free energy of solvation -65.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds