Wall clock time and date at job start Mon Mar 30 2020 03:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.46898 * 111.00443 * 123.95328 * 2 1 3 5 5 C 1.50706 * 109.46563 * 66.04606 * 4 2 1 6 6 C 1.38357 * 119.95352 * 269.72298 * 5 4 2 7 7 C 1.38307 * 120.17559 * 179.72646 * 6 5 4 8 8 C 1.38077 * 120.08934 * 0.55620 * 7 6 5 9 9 C 1.39058 * 119.91155 * 359.72320 * 8 7 6 10 10 N 1.39295 * 120.09118 * 180.02562 * 9 8 7 11 11 C 1.36850 * 120.00020 * 359.97156 * 10 9 8 12 12 H 1.07996 * 120.00253 * 0.02562 * 11 10 9 13 13 C 1.38798 * 120.00214 * 180.02562 * 11 10 9 14 14 N 1.31596 * 119.99491 * 359.97438 * 13 11 10 15 15 Si 1.86790 * 120.00193 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47307 * 89.99670 * 15 13 11 17 17 H 1.48495 * 109.47347 * 209.99793 * 15 13 11 18 18 H 1.48500 * 109.47213 * 329.99822 * 15 13 11 19 19 C 1.38029 * 119.95294 * 90.00727 * 5 4 2 20 20 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 21 21 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 22 22 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46703 * 63.95759 * 3 2 1 24 24 H 1.08998 * 109.46913 * 183.95445 * 3 2 1 25 25 H 1.08996 * 109.47095 * 303.95518 * 3 2 1 26 26 H 1.08994 * 109.47410 * 186.04624 * 4 2 1 27 27 H 1.08999 * 109.47216 * 306.04953 * 4 2 1 28 28 H 1.07994 * 119.91019 * 0.02562 * 6 5 4 29 29 H 1.07992 * 119.95869 * 180.25429 * 7 6 5 30 30 H 1.08003 * 120.04167 * 179.74612 * 8 7 6 31 31 H 0.97000 * 120.00397 * 179.97438 * 10 9 8 32 32 H 0.97004 * 119.99528 * 180.02562 * 14 13 11 33 33 H 1.07993 * 120.04483 * 359.96627 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9956 -0.7659 1.1375 5 6 1.6370 -2.2204 0.9727 6 6 0.4526 -2.7040 1.4997 7 6 0.1163 -4.0367 1.3462 8 6 0.9675 -4.8927 0.6759 9 6 2.1616 -4.4119 0.1498 10 7 3.0228 -5.2720 -0.5276 11 6 2.6946 -6.5923 -0.6755 12 1 1.7677 -6.9673 -0.2675 13 6 3.5529 -7.4495 -1.3500 14 7 4.6822 -6.9924 -1.8476 15 14 3.1046 -9.2514 -1.5525 16 1 2.3361 -9.4320 -2.8103 17 1 4.3444 -10.0667 -1.6086 18 1 2.2767 -9.6882 -0.3997 19 6 2.4934 -3.0695 0.3013 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.7044 1.8723 0.9233 24 1 3.0827 1.3433 -0.0709 25 1 1.5898 1.9164 -0.8524 26 1 3.0798 -0.6610 1.1755 27 1 1.5612 -0.3873 2.0628 28 1 -0.2133 -2.0379 2.0281 29 1 -0.8109 -4.4095 1.7554 30 1 0.7061 -5.9342 0.5601 31 1 3.8552 -4.9352 -0.8944 32 1 5.2819 -7.5914 -2.3193 33 1 3.4196 -2.6921 -0.1062 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709710160.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:23 Heat of formation + Delta-G solvation = 12.779020 kcal Electronic energy + Delta-G solvation = -14411.162232 eV Core-core repulsion = 12049.800263 eV Total energy + Delta-G solvation = -2361.361969 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.29273 -38.23741 -36.46069 -33.69963 -32.19890 -29.93045 -28.38256 -27.44448 -26.35041 -23.50148 -22.60804 -21.39407 -19.38058 -17.98335 -16.76589 -16.47226 -16.28822 -16.15776 -15.67761 -15.38492 -14.64410 -14.27415 -13.99892 -13.58256 -13.44521 -13.11601 -12.95154 -12.80288 -12.58522 -12.46869 -12.27176 -12.10703 -11.84242 -11.77477 -11.35290 -10.52529 -9.48093 -9.16809 -8.43247 -8.42205 -5.67770 0.80185 0.99926 1.41404 1.49410 1.54135 2.30683 2.89160 3.22571 3.51034 3.56795 4.03092 4.21278 4.36520 4.48603 4.52242 4.58942 4.68185 4.77492 4.81971 4.88185 4.99288 5.04814 5.14702 5.26912 5.38309 5.44437 5.81170 5.90443 5.99981 6.04087 6.15138 6.24542 6.52417 6.87435 7.58742 7.71230 8.77074 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.047447 B = 0.006113 C = 0.005644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.994573 B = 4579.054451 C = 4959.455109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.564 5.564 3 C 0.026 3.974 4 C 0.103 3.897 5 C -0.024 4.024 6 C -0.221 4.221 7 C -0.063 4.063 8 C -0.245 4.245 9 C 0.192 3.808 10 N -0.596 5.596 11 C -0.314 4.314 12 H 0.101 0.899 13 C -0.036 4.036 14 N -0.938 5.938 15 Si 0.997 3.003 16 H -0.274 1.274 17 H -0.281 1.281 18 H -0.261 1.261 19 C -0.228 4.228 20 H 0.072 0.928 21 H 0.036 0.964 22 H 0.063 0.937 23 H 0.035 0.965 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.103 0.897 31 H 0.388 0.612 32 H 0.272 0.728 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.108 11.307 5.246 14.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.288 5.288 3 C -0.122 4.122 4 C -0.024 4.024 5 C -0.025 4.025 6 C -0.243 4.243 7 C -0.081 4.081 8 C -0.269 4.269 9 C 0.076 3.924 10 N -0.202 5.202 11 C -0.444 4.444 12 H 0.119 0.881 13 C -0.234 4.234 14 N -0.579 5.579 15 Si 0.821 3.179 16 H -0.200 1.200 17 H -0.207 1.207 18 H -0.185 1.185 19 C -0.253 4.253 20 H 0.090 0.910 21 H 0.054 0.946 22 H 0.082 0.918 23 H 0.053 0.947 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.145 0.855 29 H 0.150 0.850 30 H 0.121 0.879 31 H 0.221 0.779 32 H 0.081 0.919 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.772 10.728 4.636 13.507 hybrid contribution 0.358 -0.554 0.124 0.671 sum -6.413 10.174 4.760 12.934 Atomic orbital electron populations 1.22459 0.86721 1.02441 1.00937 1.61898 1.09063 1.14561 1.43265 1.22419 1.00880 0.87662 1.01203 1.20980 1.00153 0.89366 0.91945 1.19419 0.93764 0.94294 0.95069 1.20601 0.98729 0.95673 1.09341 1.20937 0.98007 0.93432 0.95766 1.20594 0.96686 1.00056 1.09582 1.18298 0.91133 0.90256 0.92707 1.40941 1.19748 1.07377 1.52140 1.19971 1.06057 0.84951 1.33400 0.88109 1.26133 0.95427 1.04713 0.97091 1.69811 1.11643 1.37987 1.38432 0.84836 0.77629 0.76493 0.78936 1.19973 1.20662 1.18504 1.20245 1.02669 0.91872 1.10475 0.90953 0.94566 0.91822 0.94685 0.91321 0.90538 0.90384 0.92831 0.85544 0.84951 0.87896 0.77867 0.91905 0.88213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.26 127.69 1.18 1.72 16 2 N -0.56 -15.16 5.01 -953.46 -4.78 -19.94 16 3 C 0.03 0.52 9.57 127.69 1.22 1.75 16 4 C 0.10 2.90 5.12 85.56 0.44 3.34 16 5 C -0.02 -0.85 4.88 -19.88 -0.10 -0.95 16 6 C -0.22 -7.34 7.91 22.31 0.18 -7.17 16 7 C -0.06 -2.25 10.04 22.25 0.22 -2.03 16 8 C -0.24 -10.76 9.30 22.43 0.21 -10.55 16 9 C 0.19 9.16 6.62 38.36 0.25 9.41 16 10 N -0.60 -31.86 5.43 -184.29 -1.00 -32.86 16 11 C -0.31 -17.25 9.56 84.04 0.80 -16.45 16 12 H 0.10 5.32 5.68 -2.91 -0.02 5.30 16 13 C -0.04 -1.96 5.50 84.86 0.47 -1.50 16 14 N -0.94 -53.69 13.05 21.65 0.28 -53.40 16 15 Si 1.00 42.72 29.55 68.60 2.03 44.74 16 16 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 17 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 18 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 19 C -0.23 -9.66 9.55 22.43 0.21 -9.45 16 20 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 21 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 22 H 0.06 1.75 5.91 -2.38 -0.01 1.74 16 23 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.07 1.34 8.12 -2.39 -0.02 1.33 16 25 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 26 H 0.08 2.15 8.00 -2.39 -0.02 2.13 16 27 H 0.05 1.32 8.06 -2.39 -0.02 1.30 16 28 H 0.13 3.43 8.00 -2.91 -0.02 3.40 16 29 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 30 H 0.10 4.65 5.96 -2.91 -0.02 4.63 16 31 H 0.39 21.47 7.90 -92.71 -0.73 20.74 16 32 H 0.27 14.68 8.31 -92.70 -0.77 13.91 16 33 H 0.10 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -60.41 276.30 1.99 -58.42 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: 0.36 Total: 34.90 kcal Atomic # 6 Polarization: -36.96 SS G_CDS: 5.09 Total: -31.87 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -5.50 Total: -106.20 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -60.41 1.99 -58.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709710160.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.204 kcal (2) G-P(sol) polarization free energy of solvation -60.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds