Wall clock time and date at job start Mon Mar 30 2020 03:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.50700 * 109.47798 * 185.00026 * 4 2 1 6 6 H 1.08007 * 119.99653 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00569 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99767 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00179 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47270 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46925 * 120.00014 * 9 7 5 12 12 H 1.48502 * 109.47636 * 240.00118 * 9 7 5 13 13 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 14 14 C 1.46897 * 111.00172 * 84.99810 * 13 2 1 15 15 C 1.50697 * 109.46908 * 180.02562 * 14 13 2 16 16 C 1.38651 * 120.78556 * 269.71557 * 15 14 13 17 17 C 1.38211 * 119.16062 * 179.80137 * 16 15 14 18 18 N 1.31872 * 120.76423 * 0.48730 * 17 16 15 19 19 C 1.31869 * 121.72368 * 359.73983 * 18 17 16 20 20 C 1.38207 * 120.76710 * 0.02841 * 19 18 17 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 25 25 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 26 26 H 0.97005 * 119.99608 * 180.02562 * 8 7 5 27 27 H 1.00899 * 110.99467 * 321.04346 * 13 2 1 28 28 H 1.09005 * 109.47066 * 299.99968 * 14 13 2 29 29 H 1.09001 * 109.47085 * 59.99954 * 14 13 2 30 30 H 1.08002 * 120.42028 * 0.02562 * 16 15 14 31 31 H 1.07996 * 119.61887 * 180.20578 * 17 16 15 32 32 H 1.07996 * 119.61686 * 179.97438 * 19 18 17 33 33 H 1.07999 * 120.42132 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5419 -0.6149 1.3127 6 1 4.0791 -0.0861 0.5391 7 6 4.2304 -1.1926 2.3582 8 7 3.5764 -1.8370 3.2999 9 14 6.0921 -1.0614 2.4365 10 1 6.5838 -0.2919 1.2655 11 1 6.4871 -0.3648 3.6872 12 1 6.6856 -2.4226 2.4195 13 7 2.0197 -0.6924 -1.1995 14 6 2.0825 0.2227 -2.3469 15 6 2.5874 -0.5216 -3.5560 16 6 3.9436 -0.5799 -3.8383 17 6 4.3700 -1.2754 -4.9539 18 7 3.5032 -1.8705 -5.7499 19 6 2.2062 -1.8320 -5.5150 20 6 1.7064 -1.1595 -4.4159 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.6054 -0.2618 2.1369 25 1 1.7517 -1.7715 1.2055 26 1 4.0608 -2.2431 4.0357 27 1 1.4496 -1.4978 -1.4101 28 1 1.0870 0.6164 -2.5525 29 1 2.7588 1.0463 -2.1182 30 1 4.6581 -0.0911 -3.1925 31 1 5.4250 -1.3284 -5.1789 32 1 1.5265 -2.3310 -6.1898 33 1 0.6431 -1.1312 -4.2291 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709975521.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:57 Heat of formation + Delta-G solvation = 22.938766 kcal Electronic energy + Delta-G solvation = -14363.244713 eV Core-core repulsion = 12002.323304 eV Total energy + Delta-G solvation = -2360.921410 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.02181 -36.88767 -33.65651 -32.27823 -31.09184 -29.71418 -27.27887 -25.30046 -23.34883 -22.97813 -21.51582 -19.79453 -16.65472 -16.25443 -16.11540 -15.48544 -14.96263 -14.49292 -14.11298 -13.63905 -13.61996 -13.24532 -12.58110 -12.21963 -11.98856 -11.78137 -11.50762 -11.28120 -11.01050 -10.64944 -10.46076 -10.09342 -9.54371 -9.44365 -9.25229 -9.04406 -8.97589 -8.26339 -7.65814 -5.88492 -3.86154 1.23970 1.36099 3.37777 3.45221 3.49468 3.90000 4.53144 4.56132 4.70108 4.85522 5.03941 5.19989 5.27799 5.48921 5.56016 5.64186 5.69901 5.83260 5.89093 5.94087 5.98574 6.11781 6.36262 6.52416 6.58815 6.80728 6.97355 7.48978 7.65038 7.96030 8.01371 8.04557 8.13470 8.58595 9.19036 9.75249 11.23735 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.025736 B = 0.007445 C = 0.006097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.724537 B = 3760.099216 C = 4591.109851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.089 3.911 3 H 0.066 0.934 4 C 0.032 3.968 5 C -0.487 4.487 6 H 0.058 0.942 7 C 0.049 3.951 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.657 5.657 14 C 0.094 3.906 15 C -0.027 4.027 16 C -0.148 4.148 17 C 0.093 3.907 18 N -0.494 5.494 19 C 0.092 3.908 20 C -0.171 4.171 21 H 0.058 0.942 22 H 0.051 0.949 23 H 0.037 0.963 24 H 0.019 0.981 25 H 0.017 0.983 26 H 0.257 0.743 27 H 0.333 0.667 28 H 0.032 0.968 29 H 0.081 0.919 30 H 0.138 0.862 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.117 3.272 -13.810 14.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.020 4.020 3 H 0.084 0.916 4 C -0.005 4.005 5 C -0.526 4.526 6 H 0.076 0.924 7 C -0.150 4.150 8 N -0.545 5.545 9 Si 0.718 3.282 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.287 5.287 14 C -0.036 4.036 15 C -0.036 4.036 16 C -0.168 4.168 17 C -0.063 4.063 18 N -0.203 5.203 19 C -0.065 4.065 20 C -0.192 4.192 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.037 0.963 25 H 0.035 0.965 26 H 0.066 0.934 27 H 0.150 0.850 28 H 0.050 0.950 29 H 0.100 0.900 30 H 0.156 0.844 31 H 0.171 0.829 32 H 0.168 0.832 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.110 2.826 -14.208 14.816 hybrid contribution -0.260 0.472 0.739 0.915 sum -3.370 3.298 -13.469 14.270 Atomic orbital electron populations 1.22562 0.99411 1.01284 1.00704 1.21837 0.89973 0.98227 0.91987 0.91603 1.19123 0.96326 0.95424 0.89623 1.21167 0.91856 1.32846 1.06739 0.92355 1.25011 0.98026 0.95915 0.96062 1.69976 1.35105 1.37048 1.12378 0.86580 0.86453 0.77578 0.77600 1.19857 1.21402 1.21300 1.60609 1.58035 1.08260 1.01787 1.20970 0.98923 0.95275 0.88387 1.20372 0.93606 0.94799 0.94798 1.22124 0.96195 1.00335 0.98149 1.22740 0.99421 0.93180 0.90967 1.67631 1.03446 1.18587 1.30643 1.22641 0.91959 0.96259 0.95638 1.22039 1.00764 0.99873 0.96497 0.92309 0.92971 0.94414 0.96330 0.96490 0.93382 0.84978 0.94972 0.90036 0.84449 0.82948 0.83180 0.85296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 9.16 37.16 0.34 -2.57 16 2 C 0.09 1.73 2.53 -67.71 -0.17 1.56 16 3 H 0.07 1.30 7.80 -51.93 -0.40 0.90 16 4 C 0.03 0.82 4.65 -27.89 -0.13 0.69 16 5 C -0.49 -13.65 8.84 -34.44 -0.30 -13.95 16 6 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 9 Si 0.89 22.11 29.54 -169.99 -5.02 17.08 16 10 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 N -0.66 -11.86 5.95 -108.00 -0.64 -12.51 16 14 C 0.09 1.38 5.66 -4.98 -0.03 1.35 16 15 C -0.03 -0.38 5.43 -104.32 -0.57 -0.95 16 16 C -0.15 -2.07 9.82 -39.44 -0.39 -2.45 16 17 C 0.09 1.25 11.18 -17.54 -0.20 1.05 16 18 N -0.49 -6.98 10.36 -13.25 -0.14 -7.12 16 19 C 0.09 1.14 11.18 -17.55 -0.20 0.94 16 20 C -0.17 -2.12 9.82 -39.44 -0.39 -2.51 16 21 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 22 H 0.05 0.83 8.13 -51.93 -0.42 0.40 16 23 H 0.04 0.52 7.45 -51.93 -0.39 0.13 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.33 5.73 8.46 -39.29 -0.33 5.40 16 28 H 0.03 0.43 7.40 -51.93 -0.38 0.04 16 29 H 0.08 1.23 8.01 -51.93 -0.42 0.81 16 30 H 0.14 1.86 8.06 -52.49 -0.42 1.43 16 31 H 0.15 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 284.16 15.07 4.28 4.28 Total: -1.00 -31.28 284.16 -7.75 -39.04 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -4.85 Total: 1.46 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -2.12 Total: -15.52 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.04 Total: -46.34 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.28 -7.75 -39.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709975521.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.977 kcal (2) G-P(sol) polarization free energy of solvation -31.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds