Wall clock time and date at job start Mon Mar 30 2020 02:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99662 * 2 1 4 4 H 1.48496 * 109.46980 * 270.00300 * 3 2 1 5 5 H 1.48500 * 109.46931 * 29.99830 * 3 2 1 6 6 H 1.48496 * 109.46960 * 149.99987 * 3 2 1 7 7 C 1.37879 * 120.00386 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99762 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46863 * 179.97438 * 9 7 2 11 11 C 1.39926 * 119.99551 * 179.97438 * 10 9 7 12 12 C 1.38862 * 120.01112 * 0.02562 * 11 10 9 13 13 C 1.38193 * 120.06210 * 179.77685 * 12 11 10 14 14 C 1.38527 * 120.12617 * 0.40222 * 13 12 11 15 15 C 1.39271 * 119.95295 * 359.59609 * 14 13 12 16 16 C 1.38515 * 119.89658 * 0.20142 * 15 14 13 17 17 O 1.36503 * 108.65001 * 180.25061 * 15 14 13 18 18 C 1.43982 * 105.50463 * 342.69413 * 17 15 14 19 19 O 1.36635 * 131.44235 * 179.89900 * 14 13 12 20 20 H 0.97001 * 120.00341 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47394 * 59.99498 * 9 7 2 22 22 H 1.09007 * 109.46686 * 299.99816 * 9 7 2 23 23 H 0.96998 * 120.00293 * 359.97438 * 10 9 7 24 24 H 1.08001 * 119.96378 * 0.02562 * 12 11 10 25 25 H 1.08001 * 119.93289 * 180.30774 * 13 12 11 26 26 H 1.08001 * 120.01452 * 180.02562 * 16 15 14 27 27 H 1.08999 * 110.56858 * 268.59105 * 18 17 15 28 28 H 1.08996 * 110.56906 * 145.72135 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0027 11 6 1.7368 -4.9318 -0.0033 12 6 0.3716 -5.1858 -0.0036 13 6 -0.0902 -6.4883 -0.0089 14 6 0.8067 -7.5440 -0.0055 15 6 2.1765 -7.2927 -0.0053 16 6 2.6389 -5.9870 -0.0043 17 8 2.8393 -8.4860 -0.0075 18 6 1.8682 -9.4663 0.4038 19 8 0.6116 -8.8964 -0.0075 20 1 -0.4851 0.8400 0.0004 21 1 0.6247 -2.5563 -0.8919 22 1 0.6241 -2.5574 0.8881 23 1 3.1569 -3.4353 -0.0029 24 1 -0.3299 -4.3646 -0.0037 25 1 -1.1525 -6.6834 -0.0140 26 1 3.7007 -5.7899 -0.0045 27 1 1.8928 -9.5993 1.4853 28 1 2.0430 -10.4149 -0.1039 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032008201.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:12 Heat of formation + Delta-G solvation = -38.043221 kcal Electronic energy + Delta-G solvation = -14176.862989 eV Core-core repulsion = 11579.745445 eV Total energy + Delta-G solvation = -2597.117544 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.70506 -38.04582 -35.90164 -34.51667 -32.52257 -30.15258 -28.74665 -26.43859 -25.23899 -23.24353 -22.27355 -21.18491 -17.70633 -17.48550 -16.98892 -16.79148 -15.83870 -14.94668 -14.64656 -14.07023 -13.76694 -13.46989 -13.32243 -12.89925 -12.63402 -12.30086 -12.21908 -11.91805 -11.09089 -10.93883 -10.70397 -10.63213 -10.24820 -9.45232 -9.09622 -8.59888 -8.12827 -6.54115 -6.25455 -4.30934 1.66426 1.88107 3.08539 3.20542 3.27206 3.29752 3.74648 4.15869 4.22623 4.51036 4.84016 4.97895 5.04571 5.12102 5.49583 5.53969 5.68863 5.96281 6.28616 6.49593 6.56436 6.76777 6.86084 7.07132 7.35590 7.48514 7.60821 7.88197 8.16971 8.56405 8.82551 9.35663 10.85065 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.078824 B = 0.005357 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 355.136224 B = 5225.686586 C = 5553.343529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.722 5.722 11 C 0.247 3.753 12 C -0.196 4.196 13 C -0.043 4.043 14 C -0.063 4.063 15 C 0.080 3.920 16 C -0.198 4.198 17 O -0.317 6.317 18 C 0.216 3.784 19 O -0.317 6.317 20 H 0.266 0.734 21 H 0.024 0.976 22 H 0.024 0.976 23 H 0.394 0.606 24 H 0.140 0.860 25 H 0.127 0.873 26 H 0.126 0.874 27 H 0.074 0.926 28 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.323 -12.965 1.026 13.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.345 5.345 11 C 0.137 3.863 12 C -0.219 4.219 13 C -0.063 4.063 14 C -0.109 4.109 15 C 0.035 3.965 16 C -0.223 4.223 17 O -0.233 6.233 18 C 0.103 3.897 19 O -0.234 6.234 20 H 0.076 0.924 21 H 0.042 0.958 22 H 0.042 0.958 23 H 0.227 0.773 24 H 0.158 0.842 25 H 0.145 0.855 26 H 0.144 0.856 27 H 0.092 0.908 28 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.044 -12.809 0.925 13.004 hybrid contribution 0.836 0.749 0.067 1.124 sum 2.880 -12.060 0.991 12.439 Atomic orbital electron populations 1.69934 1.06075 1.27450 1.49118 1.24923 0.94947 0.99471 0.94580 0.86400 0.79667 0.82516 0.78287 1.20417 1.20958 1.19744 1.21181 0.93412 0.90337 1.52995 0.91901 1.19185 0.88637 0.82453 0.96886 1.45570 1.09851 1.01923 1.77113 1.17587 0.92098 0.85371 0.91270 1.20527 0.94257 0.95927 1.11205 1.19732 0.98278 0.89021 0.99222 1.19352 0.93231 0.83322 1.14955 1.19329 0.89236 0.86911 1.01045 1.19256 0.99667 0.87320 1.16011 1.87280 1.35999 1.15163 1.84864 1.25404 0.72694 0.92201 0.99379 1.87282 1.33800 1.16283 1.86064 0.92387 0.95842 0.95839 0.77276 0.84210 0.85471 0.85576 0.90801 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.95 13.29 55.43 0.74 -24.21 15 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 3 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 15 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 7 C -0.54 -14.25 9.28 -34.44 -0.32 -14.57 15 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 15 9 C 0.25 6.09 4.67 -5.19 -0.02 6.06 15 10 N -0.72 -14.76 5.73 -59.77 -0.34 -15.11 15 11 C 0.25 4.67 6.65 -83.72 -0.56 4.12 15 12 C -0.20 -3.58 9.31 -39.37 -0.37 -3.94 15 13 C -0.04 -0.71 10.05 -39.49 -0.40 -1.11 15 14 C -0.06 -1.08 7.15 -39.09 -0.28 -1.36 15 15 C 0.08 1.38 7.15 -39.10 -0.28 1.10 15 16 C -0.20 -3.45 9.91 -39.26 -0.39 -3.84 15 17 O -0.32 -4.94 11.40 -45.70 -0.52 -5.46 15 18 C 0.22 2.61 8.89 101.05 0.90 3.51 15 19 O -0.32 -4.93 11.41 -46.13 -0.53 -5.46 15 20 H 0.27 7.06 8.31 -40.82 -0.34 6.72 15 21 H 0.02 0.62 7.95 -51.93 -0.41 0.20 15 22 H 0.02 0.61 7.95 -51.92 -0.41 0.20 15 23 H 0.39 7.46 8.33 -40.82 -0.34 7.12 15 24 H 0.14 2.62 6.72 -52.49 -0.35 2.27 15 25 H 0.13 1.79 8.06 -52.49 -0.42 1.37 15 26 H 0.13 1.98 8.06 -52.49 -0.42 1.56 15 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 28 H 0.12 1.03 8.14 -51.93 -0.42 0.60 15 LS Contribution 250.46 15.07 3.77 3.77 Total: -1.00 -28.91 250.46 -6.45 -35.36 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -2.74 Total: 4.04 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -1.81 Total: -8.41 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.39 Total: -39.32 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -1.05 Total: -10.92 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.91 -6.45 -35.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032008201.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.678 kcal (2) G-P(sol) polarization free energy of solvation -28.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds