Wall clock time and date at job start Mon Mar 30 2020 02:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99662 * 2 1 4 4 H 1.48496 * 109.46980 * 270.00300 * 3 2 1 5 5 H 1.48500 * 109.46931 * 29.99830 * 3 2 1 6 6 H 1.48496 * 109.46960 * 149.99987 * 3 2 1 7 7 C 1.37879 * 120.00386 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99762 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46863 * 179.97438 * 9 7 2 11 11 C 1.39926 * 119.99551 * 179.97438 * 10 9 7 12 12 C 1.38862 * 120.01112 * 0.02562 * 11 10 9 13 13 C 1.38193 * 120.06210 * 179.77685 * 12 11 10 14 14 C 1.38527 * 120.12617 * 0.40222 * 13 12 11 15 15 C 1.39271 * 119.95295 * 359.59609 * 14 13 12 16 16 C 1.38515 * 119.89658 * 0.20142 * 15 14 13 17 17 O 1.36503 * 108.65001 * 180.25061 * 15 14 13 18 18 C 1.43982 * 105.50463 * 342.69413 * 17 15 14 19 19 O 1.36635 * 131.44235 * 179.89900 * 14 13 12 20 20 H 0.97001 * 120.00341 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47394 * 59.99498 * 9 7 2 22 22 H 1.09007 * 109.46686 * 299.99816 * 9 7 2 23 23 H 0.96998 * 120.00293 * 359.97438 * 10 9 7 24 24 H 1.08001 * 119.96378 * 0.02562 * 12 11 10 25 25 H 1.08001 * 119.93289 * 180.30774 * 13 12 11 26 26 H 1.08001 * 120.01452 * 180.02562 * 16 15 14 27 27 H 1.08999 * 110.56858 * 268.59105 * 18 17 15 28 28 H 1.08996 * 110.56906 * 145.72135 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0027 11 6 1.7368 -4.9318 -0.0033 12 6 0.3716 -5.1858 -0.0036 13 6 -0.0902 -6.4883 -0.0089 14 6 0.8067 -7.5440 -0.0055 15 6 2.1765 -7.2927 -0.0053 16 6 2.6389 -5.9870 -0.0043 17 8 2.8393 -8.4860 -0.0075 18 6 1.8682 -9.4663 0.4038 19 8 0.6116 -8.8964 -0.0075 20 1 -0.4851 0.8400 0.0004 21 1 0.6247 -2.5563 -0.8919 22 1 0.6241 -2.5574 0.8881 23 1 3.1569 -3.4353 -0.0029 24 1 -0.3299 -4.3646 -0.0037 25 1 -1.1525 -6.6834 -0.0140 26 1 3.7007 -5.7899 -0.0045 27 1 1.8928 -9.5993 1.4853 28 1 2.0430 -10.4149 -0.1039 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032008201.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:11 Heat of formation + Delta-G solvation = -57.093967 kcal Electronic energy + Delta-G solvation = -14177.689091 eV Core-core repulsion = 11579.745445 eV Total energy + Delta-G solvation = -2597.943646 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.92887 -39.47917 -37.11380 -36.19799 -34.39881 -31.56145 -30.28831 -28.10051 -26.40297 -24.97309 -23.70685 -22.67882 -19.29041 -18.76130 -18.46200 -18.12829 -17.27403 -16.68434 -16.13015 -15.36415 -15.31624 -15.02643 -14.73060 -14.40508 -14.03750 -13.83471 -13.63422 -13.52885 -12.81131 -12.74048 -12.18057 -12.05822 -12.01195 -11.41628 -10.78345 -10.33455 -9.50721 -8.29144 -8.05007 -6.42114 0.29126 0.49358 1.43302 1.43816 1.54868 1.86432 2.35448 2.61012 2.76648 2.97618 3.06742 3.66331 3.93428 4.14835 4.18483 4.25871 4.39309 4.66605 4.85786 5.10027 5.17423 5.20875 5.33056 5.38744 5.45672 5.58384 5.89445 6.24067 6.43748 6.71993 7.09868 7.30623 8.82355 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.078824 B = 0.005357 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 355.136224 B = 5225.686586 C = 5553.343529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.975 3.025 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.558 4.558 8 H 0.071 0.929 9 C 0.269 3.731 10 N -0.726 5.726 11 C 0.229 3.771 12 C -0.207 4.207 13 C -0.042 4.042 14 C -0.061 4.061 15 C 0.074 3.926 16 C -0.195 4.195 17 O -0.324 6.324 18 C 0.205 3.795 19 O -0.326 6.326 20 H 0.269 0.731 21 H -0.002 1.002 22 H -0.001 1.001 23 H 0.400 0.600 24 H 0.126 0.874 25 H 0.151 0.849 26 H 0.142 0.858 27 H 0.099 0.901 28 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.369 -14.070 1.166 14.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.189 4.189 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.596 4.596 8 H 0.089 0.911 9 C 0.146 3.854 10 N -0.352 5.352 11 C 0.121 3.879 12 C -0.231 4.231 13 C -0.062 4.062 14 C -0.106 4.106 15 C 0.029 3.971 16 C -0.218 4.218 17 O -0.241 6.241 18 C 0.095 3.905 19 O -0.243 6.243 20 H 0.078 0.922 21 H 0.016 0.984 22 H 0.017 0.983 23 H 0.235 0.765 24 H 0.144 0.856 25 H 0.169 0.831 26 H 0.160 0.840 27 H 0.116 0.884 28 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.105 -13.976 1.068 14.357 hybrid contribution 0.489 0.858 0.035 0.988 sum 3.593 -13.118 1.103 13.646 Atomic orbital electron populations 1.70057 1.07700 1.28469 1.50064 1.25859 0.95790 1.03217 0.94047 0.85300 0.78506 0.77837 0.78472 1.19811 1.20687 1.18726 1.21582 0.94040 0.91263 1.52701 0.91086 1.18672 0.88672 0.83508 0.94525 1.45191 1.09403 1.01727 1.78864 1.17718 0.92678 0.85012 0.92506 1.20532 0.94039 0.96505 1.11995 1.19891 0.99616 0.88233 0.98417 1.19528 0.93244 0.84226 1.13600 1.19436 0.89600 0.87440 1.00648 1.19333 1.00223 0.87160 1.15113 1.87271 1.36988 1.14878 1.84941 1.26043 0.70543 0.92386 1.01571 1.87272 1.35644 1.15210 1.86207 0.92210 0.98376 0.98279 0.76498 0.85604 0.83138 0.84010 0.88362 0.82102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.93 13.29 21.45 0.28 -52.64 15 2 C 0.01 0.59 5.46 84.66 0.46 1.05 15 3 Si 0.97 41.89 29.54 68.60 2.03 43.91 15 4 H -0.27 -11.40 7.11 99.48 0.71 -10.70 15 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 15 6 H -0.26 -10.81 7.11 99.48 0.71 -10.10 15 7 C -0.56 -29.75 9.28 25.60 0.24 -29.51 15 8 H 0.07 3.58 7.60 -2.91 -0.02 3.56 15 9 C 0.27 13.61 4.67 85.63 0.40 14.01 15 10 N -0.73 -30.27 5.73 -343.02 -1.97 -32.24 15 11 C 0.23 8.71 6.65 38.14 0.25 8.96 15 12 C -0.21 -7.70 9.31 22.41 0.21 -7.50 15 13 C -0.04 -1.37 10.05 22.33 0.22 -1.15 15 14 C -0.06 -1.96 7.15 22.59 0.16 -1.80 15 15 C 0.07 2.43 7.15 22.58 0.16 2.59 15 16 C -0.19 -6.59 9.91 22.48 0.22 -6.36 15 17 O -0.32 -9.23 11.40 -76.09 -0.87 -10.10 15 18 C 0.21 4.25 8.89 113.37 1.01 5.26 15 19 O -0.33 -9.25 11.41 -77.64 -0.89 -10.13 15 20 H 0.27 14.45 8.31 -92.71 -0.77 13.68 15 21 H 0.00 -0.09 7.95 -2.39 -0.02 -0.11 15 22 H 0.00 -0.03 7.95 -2.38 -0.02 -0.05 15 23 H 0.40 15.24 8.33 -92.71 -0.77 14.47 15 24 H 0.13 4.98 6.72 -2.91 -0.02 4.96 15 25 H 0.15 4.05 8.06 -2.91 -0.02 4.03 15 26 H 0.14 4.25 8.06 -2.91 -0.02 4.23 15 27 H 0.10 1.59 8.14 -2.39 -0.02 1.57 15 28 H 0.16 2.01 8.14 -2.39 -0.02 1.99 15 Total: -1.00 -61.64 250.46 2.34 -59.30 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.41 Total: 16.35 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 3.34 Total: -14.45 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -1.68 Total: -84.88 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -1.75 Total: -20.23 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -61.64 2.34 -59.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032008201.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.202 kcal (2) G-P(sol) polarization free energy of solvation -61.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds