Wall clock time and date at job start Mon Mar 30 2020 03:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00113 * 2 1 4 4 H 1.48502 * 109.47261 * 270.00173 * 3 2 1 5 5 H 1.48503 * 109.47232 * 30.00073 * 3 2 1 6 6 H 1.48501 * 109.47184 * 150.00182 * 3 2 1 7 7 C 1.37880 * 119.99363 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99264 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00520 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47124 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47201 * 179.97438 * 10 9 7 12 12 C 1.38260 * 120.00157 * 97.32837 * 11 10 9 13 13 C 1.38204 * 120.00133 * 179.72754 * 12 11 10 14 14 C 1.38263 * 120.00167 * 0.27936 * 13 12 11 15 15 C 1.38212 * 119.99810 * 359.97438 * 14 13 12 16 16 C 1.38213 * 120.00213 * 277.52775 * 11 10 9 17 17 N 1.48023 * 119.99598 * 0.03643 * 16 11 10 18 18 O 1.21803 * 119.99397 * 186.24556 * 17 16 11 19 19 O 1.21794 * 120.00106 * 6.25261 * 17 16 11 20 20 H 0.97005 * 119.99896 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.46947 * 59.99310 * 9 7 2 22 22 H 1.09002 * 109.46609 * 299.99655 * 9 7 2 23 23 H 1.08995 * 109.47380 * 60.00074 * 10 9 7 24 24 H 1.09002 * 109.47084 * 299.99349 * 10 9 7 25 25 H 1.08001 * 119.99412 * 0.02562 * 12 11 10 26 26 H 1.08003 * 120.00224 * 180.25894 * 13 12 11 27 27 H 1.08002 * 119.99955 * 179.97438 * 14 13 12 28 28 H 1.07996 * 120.00035 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4916 -4.9672 0.0025 12 6 1.2787 -5.6432 -1.1847 13 6 0.5926 -6.8429 -1.1834 14 6 0.1140 -7.3643 0.0044 15 6 0.3222 -6.6860 1.1904 16 6 1.0097 -5.4865 1.1892 17 7 1.2331 -4.7602 2.4596 18 8 0.9101 -5.2701 3.5175 19 8 1.7398 -3.6527 2.4469 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5570 -0.8896 22 1 0.6240 -2.5567 0.8904 23 1 2.8711 -3.6040 0.8922 24 1 2.8724 -3.6048 -0.8878 25 1 1.6528 -5.2360 -2.1124 26 1 0.4299 -7.3730 -2.1102 27 1 -0.4226 -8.3016 0.0053 28 1 -0.0519 -7.0930 2.1181 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034408449.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:10 Heat of formation + Delta-G solvation = -5.613085 kcal Electronic energy + Delta-G solvation = -14643.599940 eV Core-core repulsion = 12047.888673 eV Total energy + Delta-G solvation = -2595.711267 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.19251 -40.39297 -37.72262 -35.90900 -34.07941 -32.80842 -30.97027 -27.81363 -26.64729 -23.94627 -23.53054 -22.16696 -19.95282 -19.42492 -18.68618 -18.32695 -16.93952 -16.62502 -16.50491 -15.62161 -14.80968 -14.64434 -14.38374 -14.00072 -13.34493 -13.05267 -12.92003 -12.63846 -12.48785 -12.43627 -12.27464 -12.00904 -11.67539 -11.36692 -11.15596 -10.51780 -10.49035 -9.96285 -8.18284 -6.27764 -1.10152 0.08627 0.41353 0.59180 1.39725 1.42950 1.54020 2.40071 2.45566 3.15972 3.48942 3.51459 3.90237 4.05488 4.12605 4.32278 4.50425 4.72217 4.77636 4.96413 5.07636 5.13868 5.21013 5.28431 5.51075 5.67018 5.72976 5.84884 6.24662 6.62466 6.86795 7.40074 8.94348 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.035882 B = 0.008113 C = 0.007151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.139428 B = 3450.439063 C = 3914.749209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.531 4.531 8 H 0.061 0.939 9 C 0.051 3.949 10 C -0.086 4.086 11 C -0.023 4.023 12 C -0.130 4.130 13 C -0.045 4.045 14 C -0.117 4.117 15 C -0.062 4.062 16 C -0.077 4.077 17 N 0.028 4.972 18 O -0.179 6.179 19 O -0.194 6.194 20 H 0.262 0.738 21 H -0.010 1.010 22 H -0.011 1.011 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.159 0.841 26 H 0.188 0.812 27 H 0.190 0.810 28 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.818 -16.942 -3.947 17.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.569 4.569 8 H 0.079 0.921 9 C 0.013 3.987 10 C -0.124 4.124 11 C -0.024 4.024 12 C -0.149 4.149 13 C -0.063 4.063 14 C -0.135 4.135 15 C -0.081 4.081 16 C -0.161 4.161 17 N 0.538 4.462 18 O -0.394 6.394 19 O -0.400 6.400 20 H 0.071 0.929 21 H 0.008 0.992 22 H 0.007 0.993 23 H 0.092 0.908 24 H 0.098 0.902 25 H 0.177 0.823 26 H 0.205 0.795 27 H 0.208 0.792 28 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.599 -17.127 -4.526 17.725 hybrid contribution 0.267 1.564 0.796 1.775 sum 0.866 -15.563 -3.731 16.028 Atomic orbital electron populations 1.70111 1.07906 1.27636 1.52191 1.25964 0.95734 1.03355 0.94796 0.85428 0.78597 0.78312 0.78598 1.19234 1.21002 1.18901 1.21577 0.93473 0.91942 1.49859 0.92101 1.18759 0.93651 0.91978 0.94269 1.21007 0.98300 0.90097 1.02952 1.20349 0.94108 0.96029 0.91928 1.21530 1.00688 0.96209 0.96448 1.22151 0.90492 0.92922 1.00711 1.21702 1.00342 1.01778 0.89681 1.21407 0.93768 0.90143 1.02814 1.21368 1.13381 0.98509 0.82795 1.44117 0.97916 1.00741 1.03453 1.94369 1.53986 1.70234 1.20801 1.94691 1.45036 1.06025 1.94249 0.92916 0.99200 0.99280 0.90755 0.90191 0.82292 0.79472 0.79236 0.82054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.50 13.29 21.45 0.28 -59.21 15 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 15 3 Si 0.97 46.11 29.54 68.60 2.03 48.13 15 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 5 H -0.28 -13.36 7.11 99.48 0.71 -12.65 15 6 H -0.26 -12.19 7.11 99.48 0.71 -11.48 15 7 C -0.53 -31.53 9.11 25.60 0.23 -31.30 15 8 H 0.06 3.46 7.74 -2.91 -0.02 3.44 15 9 C 0.05 2.80 4.47 29.85 0.13 2.94 15 10 C -0.09 -3.77 4.54 29.85 0.14 -3.64 15 11 C -0.02 -0.81 5.13 -19.86 -0.10 -0.91 15 12 C -0.13 -3.27 9.67 22.27 0.22 -3.05 15 13 C -0.05 -0.72 10.05 22.27 0.22 -0.50 15 14 C -0.12 -1.87 10.05 22.27 0.22 -1.64 15 15 C -0.06 -1.55 9.56 22.27 0.21 -1.34 15 16 C -0.08 -2.74 6.83 36.37 0.25 -2.49 15 17 N 0.03 1.22 4.45 -46.46 -0.21 1.01 15 18 O -0.18 -7.36 18.46 18.88 0.35 -7.01 15 19 O -0.19 -9.82 13.57 18.89 0.26 -9.57 15 20 H 0.26 15.60 8.31 -92.70 -0.77 14.83 15 21 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 15 22 H -0.01 -0.70 6.65 -2.39 -0.02 -0.71 15 23 H 0.07 3.48 5.91 -2.39 -0.01 3.47 15 24 H 0.08 3.13 8.03 -2.39 -0.02 3.11 15 25 H 0.16 3.41 8.05 -2.91 -0.02 3.39 15 26 H 0.19 1.23 8.06 -2.91 -0.02 1.21 15 27 H 0.19 1.24 8.06 -2.91 -0.02 1.22 15 28 H 0.16 3.45 7.62 -2.91 -0.02 3.43 15 Total: -1.00 -76.77 252.08 5.86 -70.91 By element: Atomic # 1 Polarization: -3.86 SS G_CDS: 1.17 Total: -2.70 kcal Atomic # 6 Polarization: -43.56 SS G_CDS: 1.99 Total: -41.57 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: 0.08 Total: -58.20 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: 0.61 Total: -16.58 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -76.77 5.86 -70.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034408449.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.298 kcal (2) G-P(sol) polarization free energy of solvation -76.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds