Wall clock time and date at job start Mon Mar 30 2020 03:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99957 * 2 1 4 4 H 1.48497 * 109.46974 * 269.99739 * 3 2 1 5 5 H 1.48504 * 109.47278 * 29.99939 * 3 2 1 6 6 H 1.48508 * 109.47130 * 149.99682 * 3 2 1 7 7 C 1.37877 * 119.99595 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00144 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99466 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46736 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47110 * 179.97438 * 10 9 7 12 12 C 1.38238 * 119.99764 * 89.99849 * 11 10 9 13 13 C 1.38234 * 119.99693 * 179.97438 * 12 11 10 14 14 C 1.38234 * 120.00240 * 0.02562 * 13 12 11 15 15 N 1.48026 * 119.99930 * 179.97438 * 14 13 12 16 16 O 1.21793 * 119.99867 * 0.02562 * 15 14 13 17 17 O 1.21799 * 119.99956 * 179.97438 * 15 14 13 18 18 C 1.38233 * 120.00037 * 0.26327 * 14 13 12 19 19 C 1.38234 * 120.00189 * 270.02172 * 11 10 9 20 20 H 0.97000 * 119.99993 * 0.02562 * 1 2 3 21 21 H 1.08991 * 109.47585 * 60.00108 * 9 7 2 22 22 H 1.09000 * 109.46833 * 299.99441 * 9 7 2 23 23 H 1.09004 * 109.47390 * 59.99787 * 10 9 7 24 24 H 1.08997 * 109.47467 * 299.99713 * 10 9 7 25 25 H 1.07991 * 120.00287 * 0.02562 * 12 11 10 26 26 H 1.08004 * 120.00214 * 179.97438 * 13 12 11 27 27 H 1.08004 * 119.99939 * 179.72815 * 18 14 13 28 28 H 1.07999 * 119.99990 * 359.97438 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0010 11 6 5.5284 -2.6366 0.0009 12 6 6.2196 -2.6367 1.1981 13 6 7.6019 -2.6373 1.1981 14 6 8.2931 -2.6373 0.0009 15 7 9.7734 -2.6374 0.0009 16 8 10.3823 -2.6379 1.0557 17 8 10.3823 -2.6378 -1.0539 18 6 7.6019 -2.6312 -1.1962 19 6 6.2196 -2.6361 -1.1962 20 1 -0.4850 0.8400 -0.0004 21 1 3.8745 -0.6801 0.8910 22 1 3.8751 -0.6805 -0.8889 23 1 3.6584 -3.1503 -0.8892 24 1 3.6578 -3.1506 0.8907 25 1 5.6797 -2.6372 2.1334 26 1 8.1420 -2.6370 2.1334 27 1 8.1420 -2.6267 -2.1315 28 1 5.6796 -2.6361 -2.1315 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039258106.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:13 Heat of formation + Delta-G solvation = -12.438375 kcal Electronic energy + Delta-G solvation = -13967.523479 eV Core-core repulsion = 11371.516245 eV Total energy + Delta-G solvation = -2596.007234 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.25413 -40.57765 -37.69024 -36.16314 -34.32863 -32.35897 -31.75857 -28.46068 -26.01980 -24.12085 -23.38226 -21.90048 -20.36453 -19.76920 -19.04010 -18.62585 -16.62120 -16.61197 -16.35234 -15.67570 -14.94122 -14.84290 -14.54072 -14.28992 -13.72126 -13.10189 -12.94546 -12.75718 -12.46106 -12.35464 -12.31831 -12.03043 -11.81623 -11.66884 -11.37171 -10.78326 -10.34149 -10.23226 -8.30810 -6.35197 -1.21168 0.02843 0.32318 0.38474 1.35022 1.37378 1.47175 2.32538 2.33795 3.05370 3.44049 3.54661 3.66412 3.90472 4.05205 4.34057 4.47912 4.62491 4.73016 4.82326 4.82908 4.98427 5.17733 5.22046 5.39143 5.53887 5.57539 5.63902 6.24890 6.50098 6.74006 7.29931 8.85574 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.049205 B = 0.005694 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.905741 B = 4916.377568 C = 5057.259449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.247 1.247 7 C -0.531 4.531 8 H 0.040 0.960 9 C -0.004 4.004 10 C -0.071 4.071 11 C -0.016 4.016 12 C -0.118 4.118 13 C -0.049 4.049 14 C -0.076 4.076 15 N 0.035 4.965 16 O -0.183 6.183 17 O -0.183 6.183 18 C -0.049 4.049 19 C -0.118 4.118 20 H 0.266 0.734 21 H 0.022 0.978 22 H 0.021 0.979 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.164 0.836 26 H 0.166 0.834 27 H 0.166 0.834 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.990 -4.658 -0.003 15.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.768 3.232 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.170 1.170 7 C -0.569 4.569 8 H 0.058 0.942 9 C -0.042 4.042 10 C -0.109 4.109 11 C -0.017 4.017 12 C -0.136 4.136 13 C -0.068 4.068 14 C -0.159 4.159 15 N 0.549 4.451 16 O -0.396 6.396 17 O -0.396 6.396 18 C -0.068 4.068 19 C -0.136 4.136 20 H 0.075 0.925 21 H 0.041 0.959 22 H 0.039 0.961 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.181 0.819 26 H 0.183 0.817 27 H 0.183 0.817 28 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 14.168 -4.554 0.000 14.882 hybrid contribution 0.176 0.763 -0.014 0.784 sum 14.344 -3.791 -0.014 14.836 Atomic orbital electron populations 1.70053 1.08270 1.28134 1.52555 1.25944 0.95490 1.03296 0.94278 0.85750 0.79532 0.78768 0.79150 1.19288 1.21326 1.17045 1.21465 0.91867 0.93271 1.50306 0.94207 1.19493 0.93883 0.93781 0.97017 1.20625 0.88129 0.98316 1.03796 1.20785 0.97285 0.89960 0.93646 1.21391 0.92179 1.00291 0.99788 1.21213 0.94687 0.93734 0.97207 1.21288 0.77603 1.18691 0.98350 1.43891 1.04579 0.96644 0.99999 1.94500 1.69905 1.54340 1.20849 1.94501 1.69901 1.54323 1.20846 1.21218 0.94692 0.93710 0.97200 1.21395 0.92169 1.00279 0.99780 0.92512 0.95941 0.96071 0.90294 0.90315 0.81868 0.81685 0.81658 0.81804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.27 13.96 21.45 0.30 -56.97 15 2 C 0.01 0.39 5.47 84.65 0.46 0.86 15 3 Si 0.94 42.02 27.47 68.60 1.88 43.90 15 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 5 H -0.29 -12.77 7.11 99.48 0.71 -12.06 15 6 H -0.25 -10.12 6.54 99.48 0.65 -9.47 15 7 C -0.53 -28.19 9.66 25.60 0.25 -27.94 15 8 H 0.04 2.32 7.99 -2.91 -0.02 2.29 15 9 C 0.00 -0.18 4.02 29.85 0.12 -0.06 15 10 C -0.07 -2.23 5.28 29.85 0.16 -2.07 15 11 C -0.02 -0.41 5.13 -19.87 -0.10 -0.51 15 12 C -0.12 -2.63 9.70 22.27 0.22 -2.41 15 13 C -0.05 -1.08 9.56 22.27 0.21 -0.87 15 14 C -0.08 -1.87 6.85 36.37 0.25 -1.62 15 15 N 0.03 0.98 4.45 -46.46 -0.21 0.77 15 16 O -0.18 -5.34 18.45 18.89 0.35 -4.99 15 17 O -0.18 -5.33 18.45 18.89 0.35 -4.98 15 18 C -0.05 -1.07 9.56 22.27 0.21 -0.86 15 19 C -0.12 -2.61 9.70 22.27 0.22 -2.39 15 20 H 0.27 15.04 8.31 -92.71 -0.77 14.27 15 21 H 0.02 0.91 7.20 -2.39 -0.02 0.89 15 22 H 0.02 0.84 7.57 -2.39 -0.02 0.82 15 23 H 0.08 2.41 8.09 -2.38 -0.02 2.39 15 24 H 0.08 2.41 8.09 -2.39 -0.02 2.39 15 25 H 0.16 3.07 8.06 -2.92 -0.02 3.05 15 26 H 0.17 3.02 7.61 -2.91 -0.02 3.00 15 27 H 0.17 3.01 7.61 -2.91 -0.02 2.99 15 28 H 0.16 3.05 8.06 -2.91 -0.02 3.03 15 Total: -1.00 -63.14 257.05 5.77 -57.37 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: 1.11 Total: 2.79 kcal Atomic # 6 Polarization: -39.88 SS G_CDS: 1.99 Total: -37.89 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.09 Total: -56.20 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.70 Total: -9.98 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.88 Total: 43.90 kcal Total: -63.14 5.77 -57.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039258106.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.930 kcal (2) G-P(sol) polarization free energy of solvation -63.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds