Wall clock time and date at job start Mon Mar 30 2020 03:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99951 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99799 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99702 * 3 2 1 7 7 C 1.38811 * 120.00468 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99701 * 359.73557 * 7 2 1 9 9 N 1.36935 * 120.00369 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99926 * 179.73019 * 9 7 2 11 11 C 1.50699 * 109.46700 * 180.02562 * 10 9 7 12 12 C 1.38281 * 119.98169 * 259.71870 * 11 10 9 13 13 C 1.38216 * 120.14153 * 179.68468 * 12 11 10 14 14 C 1.38282 * 120.14325 * 0.64587 * 13 12 11 15 15 C 1.38499 * 120.02591 * 359.64467 * 14 13 12 16 16 C 1.38499 * 119.98948 * 79.99874 * 11 10 9 17 17 O 1.36501 * 131.54078 * 0.02562 * 16 11 10 18 18 C 1.43988 * 105.48713 * 162.68201 * 17 16 11 19 19 O 1.36498 * 131.53666 * 180.02562 * 15 14 13 20 20 H 0.97000 * 120.00663 * 0.02562 * 1 2 3 21 21 H 0.97005 * 119.99813 * 359.72895 * 9 7 2 22 22 H 1.08998 * 109.47134 * 299.99639 * 10 9 7 23 23 H 1.08994 * 109.47397 * 59.99931 * 10 9 7 24 24 H 1.07997 * 119.93327 * 0.02599 * 12 11 10 25 25 H 1.08005 * 119.92866 * 180.29340 * 13 12 11 26 26 H 1.07995 * 119.98168 * 179.65701 * 14 13 12 27 27 H 1.09000 * 110.56872 * 268.56072 * 18 17 16 28 28 H 1.08999 * 110.69809 * 145.75270 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0053 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0076 11 6 5.5937 -2.1953 0.0075 12 6 6.3131 -2.2847 -1.1701 13 6 7.6709 -2.0263 -1.1753 14 6 8.3183 -1.6904 -0.0004 15 6 7.6052 -1.6049 1.1838 16 6 6.2354 -1.8583 1.1877 17 8 5.7682 -1.7108 2.4618 18 6 6.9326 -1.7651 3.3070 19 8 7.9956 -1.2983 2.4553 20 1 -0.4851 0.8400 -0.0004 21 1 3.8646 -0.3620 -0.0029 22 1 3.8485 -3.0379 0.9003 23 1 3.8492 -3.0467 -0.8796 24 1 5.8120 -2.5515 -2.0888 25 1 8.2285 -2.0926 -2.0978 26 1 9.3803 -1.4945 -0.0065 27 1 7.1230 -2.7882 3.6313 28 1 6.8148 -1.1072 4.1680 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040667578.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:28 Heat of formation + Delta-G solvation = -16.663455 kcal Electronic energy + Delta-G solvation = -14664.698287 eV Core-core repulsion = 12068.507840 eV Total energy + Delta-G solvation = -2596.190447 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.01784 -37.97858 -36.21131 -34.70388 -31.89883 -30.07307 -29.80821 -25.87871 -25.66750 -22.77508 -22.49603 -21.06039 -18.00674 -17.81399 -17.42386 -16.80015 -16.09957 -14.60684 -14.46030 -14.20477 -13.93491 -13.82895 -13.13298 -12.81064 -12.58808 -12.48571 -12.26784 -11.84688 -11.42735 -10.84942 -10.81987 -10.59381 -10.11349 -9.57076 -8.88942 -8.59007 -7.94669 -7.20917 -5.74081 -3.09442 1.28417 1.32016 2.89456 3.41703 3.47769 3.48380 3.58094 3.69644 4.58247 4.63452 4.71388 4.90790 5.10263 5.19956 5.32689 5.36957 5.56400 5.59179 5.75932 6.09433 6.14082 6.25054 6.43619 6.50142 6.60919 6.83766 7.27039 8.00572 8.44548 9.23064 9.95745 10.15940 11.44191 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.032662 B = 0.008734 C = 0.008115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.046988 B = 3205.116476 C = 3449.375012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.007 3.993 3 Si 0.881 3.119 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.092 0.908 9 N -0.748 5.748 10 C 0.196 3.804 11 C -0.068 4.068 12 C -0.097 4.097 13 C -0.117 4.117 14 C -0.108 4.108 15 C 0.021 3.979 16 C 0.049 3.951 17 O -0.293 6.293 18 C 0.210 3.790 19 O -0.314 6.314 20 H 0.259 0.741 21 H 0.362 0.638 22 H 0.038 0.962 23 H 0.042 0.958 24 H 0.140 0.860 25 H 0.136 0.864 26 H 0.130 0.870 27 H 0.080 0.920 28 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.891 -4.969 1.613 18.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.189 4.189 3 Si 0.711 3.289 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.109 0.891 9 N -0.394 5.394 10 C 0.069 3.931 11 C -0.069 4.069 12 C -0.115 4.115 13 C -0.135 4.135 14 C -0.126 4.126 15 C -0.023 4.023 16 C 0.004 3.996 17 O -0.209 6.209 18 C 0.098 3.902 19 O -0.231 6.231 20 H 0.069 0.931 21 H 0.195 0.805 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.157 0.843 25 H 0.153 0.847 26 H 0.148 0.852 27 H 0.098 0.902 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 17.602 -4.920 1.817 18.367 hybrid contribution 0.574 1.279 0.374 1.451 sum 18.177 -3.641 2.190 18.667 Atomic orbital electron populations 1.69695 1.05045 1.25825 1.57645 1.24621 0.95188 0.97118 1.01950 0.86580 0.79390 0.85030 0.77861 1.20966 1.21642 1.20291 1.19056 0.80343 0.94839 1.43011 0.89056 1.42665 1.03898 1.01728 1.91115 1.19558 0.83788 0.89990 0.99740 1.19474 0.97979 1.00056 0.89392 1.20974 0.93703 0.99873 0.96991 1.20882 0.94603 1.00936 0.97049 1.19989 0.99854 1.03753 0.89047 1.19832 0.92492 1.03098 0.86891 1.19683 0.90902 1.02167 0.86831 1.87517 1.30437 1.88901 1.14025 1.25605 0.72327 1.00867 0.91385 1.87312 1.43594 1.77854 1.14291 0.93051 0.80497 0.94427 0.94064 0.84265 0.84665 0.85185 0.90208 0.85438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.94 13.97 55.49 0.78 -29.17 15 2 C 0.01 0.21 5.50 -17.43 -0.10 0.11 15 3 Si 0.88 23.09 27.73 -169.99 -4.71 18.37 15 4 H -0.28 -7.28 7.11 56.52 0.40 -6.88 15 5 H -0.29 -7.61 7.11 56.52 0.40 -7.21 15 6 H -0.28 -7.08 6.52 56.52 0.37 -6.71 15 7 C -0.24 -7.12 10.47 -15.06 -0.16 -7.28 15 8 H 0.09 2.82 8.06 -52.48 -0.42 2.40 15 9 N -0.75 -18.93 5.40 -61.09 -0.33 -19.26 15 10 C 0.20 4.05 6.39 -5.19 -0.03 4.02 15 11 C -0.07 -1.20 5.26 -104.51 -0.55 -1.75 15 12 C -0.10 -1.39 9.66 -39.57 -0.38 -1.77 15 13 C -0.12 -1.41 10.04 -39.57 -0.40 -1.80 15 14 C -0.11 -1.39 10.06 -39.47 -0.40 -1.79 15 15 C 0.02 0.33 7.15 -39.09 -0.28 0.05 15 16 C 0.05 0.88 6.85 -39.09 -0.27 0.61 15 17 O -0.29 -5.29 11.39 -45.69 -0.52 -5.81 15 18 C 0.21 2.71 8.89 101.05 0.90 3.61 15 19 O -0.31 -4.66 11.40 -45.68 -0.52 -5.19 15 20 H 0.26 7.90 8.31 -40.82 -0.34 7.56 15 21 H 0.36 9.22 5.52 -40.82 -0.23 8.99 15 22 H 0.04 0.81 8.14 -51.93 -0.42 0.38 15 23 H 0.04 0.81 8.00 -51.93 -0.42 0.39 15 24 H 0.14 1.74 8.03 -52.49 -0.42 1.32 15 25 H 0.14 1.17 8.06 -52.48 -0.42 0.75 15 26 H 0.13 1.34 8.06 -52.49 -0.42 0.91 15 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 15 28 H 0.13 1.27 8.14 -51.93 -0.42 0.84 15 LS Contribution 249.37 15.07 3.76 3.76 Total: -1.00 -34.17 249.37 -5.98 -40.15 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -2.77 Total: 3.14 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -1.66 Total: -5.99 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 0.45 Total: -48.43 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -1.04 Total: -11.00 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -4.71 Total: 18.37 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -34.17 -5.98 -40.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040667578.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.486 kcal (2) G-P(sol) polarization free energy of solvation -34.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds