Wall clock time and date at job start Mon Mar 30 2020 03:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99951 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99799 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99702 * 3 2 1 7 7 C 1.38811 * 120.00468 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99701 * 359.73557 * 7 2 1 9 9 N 1.36935 * 120.00369 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99926 * 179.73019 * 9 7 2 11 11 C 1.50699 * 109.46700 * 180.02562 * 10 9 7 12 12 C 1.38281 * 119.98169 * 259.71870 * 11 10 9 13 13 C 1.38216 * 120.14153 * 179.68468 * 12 11 10 14 14 C 1.38282 * 120.14325 * 0.64587 * 13 12 11 15 15 C 1.38499 * 120.02591 * 359.64467 * 14 13 12 16 16 C 1.38499 * 119.98948 * 79.99874 * 11 10 9 17 17 O 1.36501 * 131.54078 * 0.02562 * 16 11 10 18 18 C 1.43988 * 105.48713 * 162.68201 * 17 16 11 19 19 O 1.36498 * 131.53666 * 180.02562 * 15 14 13 20 20 H 0.97000 * 120.00663 * 0.02562 * 1 2 3 21 21 H 0.97005 * 119.99813 * 359.72895 * 9 7 2 22 22 H 1.08998 * 109.47134 * 299.99639 * 10 9 7 23 23 H 1.08994 * 109.47397 * 59.99931 * 10 9 7 24 24 H 1.07997 * 119.93327 * 0.02599 * 12 11 10 25 25 H 1.08005 * 119.92866 * 180.29340 * 13 12 11 26 26 H 1.07995 * 119.98168 * 179.65701 * 14 13 12 27 27 H 1.09000 * 110.56872 * 268.56072 * 18 17 16 28 28 H 1.08999 * 110.69809 * 145.75270 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0053 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0076 11 6 5.5937 -2.1953 0.0075 12 6 6.3131 -2.2847 -1.1701 13 6 7.6709 -2.0263 -1.1753 14 6 8.3183 -1.6904 -0.0004 15 6 7.6052 -1.6049 1.1838 16 6 6.2354 -1.8583 1.1877 17 8 5.7682 -1.7108 2.4618 18 6 6.9326 -1.7651 3.3070 19 8 7.9956 -1.2983 2.4553 20 1 -0.4851 0.8400 -0.0004 21 1 3.8646 -0.3620 -0.0029 22 1 3.8485 -3.0379 0.9003 23 1 3.8492 -3.0467 -0.8796 24 1 5.8120 -2.5515 -2.0888 25 1 8.2285 -2.0926 -2.0978 26 1 9.3803 -1.4945 -0.0065 27 1 7.1230 -2.7882 3.6313 28 1 6.8148 -1.1072 4.1680 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040667578.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:28 Heat of formation + Delta-G solvation = -41.170266 kcal Electronic energy + Delta-G solvation = -14665.760982 eV Core-core repulsion = 12068.507840 eV Total energy + Delta-G solvation = -2597.253142 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.12678 -39.14773 -37.40614 -36.52638 -33.85394 -31.72134 -30.88900 -27.52529 -26.73759 -24.40483 -23.85572 -22.51042 -19.96481 -18.99976 -18.54861 -18.04330 -17.18724 -16.67115 -15.88749 -15.56328 -15.27593 -15.02925 -14.92983 -14.20517 -13.95662 -13.82968 -13.74957 -13.37863 -12.99587 -12.80253 -12.26080 -11.92847 -11.83781 -11.77401 -11.06427 -9.76522 -9.36262 -9.05660 -8.07009 -5.40580 0.17735 0.19070 1.33357 1.35858 1.43439 1.84363 2.43823 2.56115 2.58380 3.23785 3.42773 3.78667 3.80330 3.95703 4.03932 4.21144 4.24636 4.36415 4.51354 4.74172 4.83875 5.05964 5.16693 5.37618 5.52195 5.56245 5.69683 6.14910 6.17459 7.01222 7.76285 7.96636 9.14437 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.032662 B = 0.008734 C = 0.008115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.046988 B = 3205.116476 C = 3449.375012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.056 4.056 3 Si 0.952 3.048 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.236 4.236 8 H 0.062 0.938 9 N -0.751 5.751 10 C 0.196 3.804 11 C -0.095 4.095 12 C -0.098 4.098 13 C -0.098 4.098 14 C -0.098 4.098 15 C 0.008 3.992 16 C 0.020 3.980 17 O -0.332 6.332 18 C 0.203 3.797 19 O -0.321 6.321 20 H 0.260 0.740 21 H 0.363 0.637 22 H 0.021 0.979 23 H 0.052 0.948 24 H 0.156 0.844 25 H 0.181 0.819 26 H 0.164 0.836 27 H 0.105 0.895 28 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.019 -4.400 0.758 21.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.248 4.248 3 Si 0.779 3.221 4 H -0.196 1.196 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.367 4.367 8 H 0.080 0.920 9 N -0.397 5.397 10 C 0.071 3.929 11 C -0.096 4.096 12 C -0.116 4.116 13 C -0.116 4.116 14 C -0.117 4.117 15 C -0.036 4.036 16 C -0.025 4.025 17 O -0.249 6.249 18 C 0.092 3.908 19 O -0.238 6.238 20 H 0.069 0.931 21 H 0.195 0.805 22 H 0.039 0.961 23 H 0.070 0.930 24 H 0.173 0.827 25 H 0.198 0.802 26 H 0.181 0.819 27 H 0.123 0.877 28 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 20.776 -4.381 0.961 21.254 hybrid contribution -0.339 0.972 0.655 1.220 sum 20.437 -3.409 1.616 20.782 Atomic orbital electron populations 1.69859 1.06862 1.26768 1.59537 1.25404 0.96061 1.00900 1.02470 0.85460 0.78095 0.80122 0.78413 1.19579 1.21675 1.19393 1.19062 0.82286 0.93783 1.41557 0.92048 1.42695 1.02525 1.03526 1.90921 1.19580 0.86169 0.87963 0.99190 1.19351 0.96054 1.03102 0.91096 1.21251 0.94892 0.99223 0.96247 1.21369 0.93580 0.98228 0.98429 1.20535 1.01418 1.01603 0.88106 1.20162 0.91868 1.03650 0.87909 1.19951 0.92234 1.03546 0.86765 1.87445 1.33086 1.89354 1.14969 1.26058 0.70682 1.03102 0.90958 1.87278 1.44016 1.78208 1.14281 0.93128 0.80463 0.96101 0.92974 0.82666 0.80207 0.81888 0.87726 0.82939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.27 13.97 21.65 0.30 -63.97 15 2 C -0.06 -3.46 5.50 84.86 0.47 -3.00 15 3 Si 0.95 48.02 27.73 68.60 1.90 49.93 15 4 H -0.27 -12.99 7.11 99.48 0.71 -12.28 15 5 H -0.29 -14.56 7.11 99.48 0.71 -13.86 15 6 H -0.27 -13.03 6.52 99.48 0.65 -12.38 15 7 C -0.24 -14.18 10.47 84.03 0.88 -13.30 15 8 H 0.06 3.97 8.06 -2.91 -0.02 3.94 15 9 N -0.75 -38.27 5.40 -347.19 -1.87 -40.15 15 10 C 0.20 8.23 6.39 85.63 0.55 8.78 15 11 C -0.09 -3.28 5.26 -19.79 -0.10 -3.38 15 12 C -0.10 -2.53 9.66 22.27 0.22 -2.31 15 13 C -0.10 -1.92 10.04 22.28 0.22 -1.70 15 14 C -0.10 -2.14 10.06 22.34 0.22 -1.91 15 15 C 0.01 0.24 7.15 22.59 0.16 0.40 15 16 C 0.02 0.69 6.85 22.59 0.15 0.85 15 17 O -0.33 -12.02 11.39 -76.07 -0.87 -12.88 15 18 C 0.20 4.99 8.89 113.37 1.01 5.99 15 19 O -0.32 -8.94 11.40 -76.03 -0.87 -9.81 15 20 H 0.26 16.14 8.31 -92.71 -0.77 15.37 15 21 H 0.36 18.24 5.52 -92.70 -0.51 17.73 15 22 H 0.02 0.94 8.14 -2.39 -0.02 0.92 15 23 H 0.05 2.05 8.00 -2.39 -0.02 2.03 15 24 H 0.16 3.41 8.03 -2.91 -0.02 3.39 15 25 H 0.18 1.93 8.06 -2.91 -0.02 1.91 15 26 H 0.16 2.46 8.06 -2.91 -0.02 2.44 15 27 H 0.11 1.98 8.14 -2.39 -0.02 1.96 15 28 H 0.15 2.80 8.14 -2.39 -0.02 2.78 15 Total: -1.00 -75.49 249.37 2.98 -72.50 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.61 Total: 13.95 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 3.78 Total: -9.58 kcal Atomic # 7 Polarization: -102.55 SS G_CDS: -1.57 Total: -104.12 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -1.73 Total: -22.69 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 1.90 Total: 49.93 kcal Total: -75.49 2.98 -72.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040667578.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.333 kcal (2) G-P(sol) polarization free energy of solvation -75.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds