Wall clock time and date at job start Mon Mar 30 2020 03:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 119.88242 * 2 1 4 4 C 1.37962 * 120.23917 * 179.72789 * 3 2 1 5 5 C 1.39710 * 119.99098 * 0.54167 * 4 3 2 6 6 C 1.47679 * 120.11589 * 179.70637 * 5 4 3 7 7 O 1.21504 * 119.99976 * 180.02562 * 6 5 4 8 8 O 1.34732 * 120.00001 * 0.02885 * 6 5 4 9 9 C 1.34848 * 117.00024 * 180.02562 * 8 6 5 10 10 H 1.08001 * 120.00040 * 359.97438 * 9 8 6 11 11 C 1.38817 * 120.00005 * 180.02562 * 9 8 6 12 12 N 1.31413 * 119.99979 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 120.00132 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.46969 * 90.00219 * 13 11 9 15 15 H 1.48499 * 109.47200 * 210.00574 * 13 11 9 16 16 H 1.48500 * 109.46965 * 330.00859 * 13 11 9 17 17 C 1.39537 * 119.76405 * 359.73233 * 5 4 3 18 18 C 1.38657 * 119.76742 * 359.97438 * 17 5 4 19 19 N 1.39709 * 119.99807 * 179.97438 * 18 17 5 20 20 H 1.09002 * 109.47152 * 269.72804 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.72905 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.72886 * 1 2 3 23 23 H 1.08001 * 119.88100 * 359.97391 * 3 2 1 24 24 H 1.07997 * 120.00294 * 180.24910 * 4 3 2 25 25 H 0.97000 * 120.00003 * 179.97438 * 12 11 9 26 26 H 1.07999 * 120.11767 * 180.02562 * 17 5 4 27 27 H 0.97002 * 120.00330 * 180.02562 * 19 18 17 28 28 H 0.97001 * 120.00265 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1988 0.0000 4 6 3.5754 1.2074 0.0057 5 6 4.2814 0.0017 0.0000 6 6 5.7581 0.0078 -0.0005 7 8 6.3699 -1.0420 -0.0059 8 8 6.4270 1.1773 0.0051 9 6 7.7739 1.1122 0.0037 10 1 8.2682 0.1519 -0.0013 11 6 8.5252 2.2795 0.0098 12 7 9.8378 2.2161 0.0090 13 14 7.6705 3.9404 0.0191 14 1 7.4445 4.3729 1.4217 15 1 8.5217 4.9391 -0.6759 16 1 6.3655 3.8294 -0.6809 17 6 3.5861 -1.2081 -0.0058 18 6 2.1995 -1.2052 -0.0052 19 7 1.4985 -2.4136 -0.0115 20 1 -0.3633 -0.0049 1.0277 21 1 -0.3633 -0.8876 -0.5180 22 1 -0.3633 0.8924 -0.5096 23 1 1.6520 2.1319 -0.0004 24 1 4.1096 2.1460 0.0097 25 1 10.3628 3.0317 0.0128 26 1 4.1260 -2.1434 -0.0097 27 1 0.5285 -2.4117 -0.0115 28 1 1.9817 -3.2547 -0.0159 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041041913.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:54 Heat of formation + Delta-G solvation = -81.443903 kcal Electronic energy + Delta-G solvation = -14286.424076 eV Core-core repulsion = 11687.424538 eV Total energy + Delta-G solvation = -2598.999538 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.42419 -40.16007 -37.45469 -35.55727 -34.53909 -33.48308 -29.87561 -28.96680 -27.12152 -23.83502 -23.16762 -21.48862 -20.21921 -19.09291 -17.93913 -17.42764 -16.76035 -16.48430 -16.25525 -15.65714 -15.02143 -14.82096 -14.57291 -14.44505 -14.15074 -13.46875 -13.16257 -13.01634 -12.51699 -12.43900 -12.31633 -12.09689 -11.84728 -11.60307 -11.23631 -10.86970 -9.78233 -8.59481 -8.45116 -6.44743 -0.18629 0.59049 1.32112 1.35956 1.54169 1.74857 2.23895 2.32606 2.78867 3.00025 3.04033 3.88256 3.98949 4.19126 4.29957 4.44594 4.73308 4.77714 4.89684 4.95379 5.21556 5.28742 5.44064 5.52824 5.56136 5.83822 5.90127 6.44981 6.53445 6.75730 7.01415 7.52223 8.53398 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.045554 B = 0.007400 C = 0.006388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.508597 B = 3783.040132 C = 4382.403261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.136 4.136 3 C -0.077 4.077 4 C -0.137 4.137 5 C -0.084 4.084 6 C 0.446 3.554 7 O -0.577 6.577 8 O -0.244 6.244 9 C -0.412 4.412 10 H 0.056 0.944 11 C 0.018 3.982 12 N -0.912 5.912 13 Si 0.984 3.016 14 H -0.256 1.256 15 H -0.261 1.261 16 H -0.247 1.247 17 C -0.156 4.156 18 C 0.209 3.791 19 N -0.863 5.863 20 H 0.082 0.918 21 H 0.076 0.924 22 H 0.085 0.915 23 H 0.163 0.837 24 H 0.125 0.875 25 H 0.292 0.708 26 H 0.119 0.881 27 H 0.412 0.588 28 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.111 -0.738 -0.009 23.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.141 4.141 3 C -0.096 4.096 4 C -0.158 4.158 5 C -0.086 4.086 6 C 0.296 3.704 7 O -0.475 6.475 8 O -0.153 6.153 9 C -0.488 4.488 10 H 0.074 0.926 11 C -0.183 4.183 12 N -0.552 5.552 13 Si 0.802 3.198 14 H -0.181 1.181 15 H -0.185 1.185 16 H -0.171 1.171 17 C -0.179 4.179 18 C 0.103 3.897 19 N -0.405 5.405 20 H 0.101 0.899 21 H 0.094 0.906 22 H 0.104 0.896 23 H 0.180 0.820 24 H 0.143 0.857 25 H 0.102 0.898 26 H 0.137 0.863 27 H 0.244 0.756 28 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -22.736 -0.879 -0.014 22.753 hybrid contribution 0.996 -0.338 0.016 1.052 sum -21.740 -1.217 0.002 21.774 Atomic orbital electron populations 1.20742 0.87783 1.04124 1.03401 1.20024 0.98092 0.90766 1.05240 1.21099 0.92053 0.98974 0.97445 1.21321 0.95589 0.96377 1.02474 1.18873 0.86906 0.96184 1.06665 1.21835 0.90034 0.81776 0.76791 1.90609 1.71254 1.34153 1.51528 1.83544 1.20902 1.33067 1.77808 1.20403 0.77612 0.96054 1.54697 0.92608 1.25634 0.95419 1.03420 0.93812 1.69684 1.06033 1.32112 1.47327 0.85086 0.79322 0.75257 0.80126 1.18066 1.18532 1.17078 1.20543 0.93236 0.96709 1.07419 1.17361 0.89310 0.88286 0.94711 1.42404 1.09480 1.04055 1.84593 0.89913 0.90564 0.89641 0.81964 0.85740 0.89806 0.86344 0.75575 0.76630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 9.56 71.24 0.68 -0.56 15 2 C -0.14 -2.95 5.90 -19.68 -0.12 -3.07 15 3 C -0.08 -1.90 9.67 22.21 0.21 -1.68 15 4 C -0.14 -4.71 9.61 22.56 0.22 -4.49 15 5 C -0.08 -3.51 5.87 -20.11 -0.12 -3.63 15 6 C 0.45 24.21 7.84 70.32 0.55 24.76 15 7 O -0.58 -35.11 15.59 19.82 0.31 -34.80 15 8 O -0.24 -14.12 7.82 11.41 0.09 -14.03 15 9 C -0.41 -26.76 10.11 67.96 0.69 -26.07 15 10 H 0.06 4.11 7.09 -2.91 -0.02 4.09 15 11 C 0.02 1.06 5.50 84.89 0.47 1.52 15 12 N -0.91 -56.46 13.96 21.64 0.30 -56.16 15 13 Si 0.98 44.51 28.62 68.60 1.96 46.47 15 14 H -0.26 -10.92 7.11 99.48 0.71 -10.21 15 15 H -0.26 -10.87 7.11 99.48 0.71 -10.16 15 16 H -0.25 -10.70 7.11 99.48 0.71 -10.00 15 17 C -0.16 -5.46 9.44 22.68 0.21 -5.24 15 18 C 0.21 5.29 6.73 38.17 0.26 5.55 15 19 N -0.86 -14.35 8.99 -51.45 -0.46 -14.81 15 20 H 0.08 0.82 8.14 -2.39 -0.02 0.80 15 21 H 0.08 0.68 6.53 -2.39 -0.02 0.66 15 22 H 0.08 0.81 8.08 -2.38 -0.02 0.79 15 23 H 0.16 2.74 8.06 -2.91 -0.02 2.71 15 24 H 0.12 4.40 7.60 -2.91 -0.02 4.38 15 25 H 0.29 16.14 8.31 -92.71 -0.77 15.37 15 26 H 0.12 4.35 7.65 -2.91 -0.02 4.33 15 27 H 0.41 4.32 6.80 -92.71 -0.63 3.69 15 28 H 0.40 6.08 8.84 -92.71 -0.82 5.26 15 Total: -1.00 -79.56 253.62 5.01 -74.55 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -0.24 Total: 11.70 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 3.05 Total: -12.92 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -0.16 Total: -70.97 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: 0.40 Total: -48.84 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.96 Total: 46.47 kcal Total: -79.56 5.01 -74.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041041913.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.895 kcal (2) G-P(sol) polarization free energy of solvation -79.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds